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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6J0C | 9761 | 2022-12-18 | 2018-12-23 | 3.7 | 3.78 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.05 | 15.99 | 0.01 | 2.313 | 5.30 | 3.09 | 6.5 | 93.5 | 0.0 | -4.56 | 0.50 | 0.83 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33108 | 4248 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKD | 4907 | 2022-12-18 | 2019-04-30 | 3.2 | 3.12 | 3.18 | 3.1 | 0.010 | 1.18 | 0.0 | 0.07 | 9.16 | 0.01 | 0.176 | 13.93 | 0.24 | 3.1 | 96.9 | 0.0 | -3.60 | 0.69 | 0.82 | 4.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25290 | 3234 | 24 | 0 | 90 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2022-12-18 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.60 | 32.0 | 0.08 | 14.75 | 0.01 | 1.695 | 18.06 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2022-12-18 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.46 | 8.0 | 0.12 | 14.43 | 0.01 | 1.877 | 26.01 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✔ | 6K4Y | 9916 | 2022-12-18 | 2019-05-27 | 3.79 | 3.88 | — | 3.9 | 0.008 | 0.98 | 0.0 | 0.06 | 14.87 | 0.01 | 2.242 | 8.97 | 0.68 | 7.6 | 92.3 | 0.1 | -4.54 | 0.61 | 0.69 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33247 | 3950 | 11 | 105 | 3 | 0 | 0 | logfile |
✔ | 5FLM | 3218 | 2022-12-18 | 2015-10-26 | 3.4 | 3.52 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 11.28 | 0.00 | 2.034 | 14.89 | 0.00 | 5.1 | 94.9 | 0.0 | -2.61 | 0.51 | 0.66 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32712 | 3896 | 21 | 80 | 9 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-12-19 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.14 | 0.0 | 0.06 | 18.11 | 0.02 | 1.212 | 7.53 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 5WPV | 8883 | 2022-12-18 | 2017-08-07 | 3.59 | 3.68 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.05 | 10.97 | 0.01 | 2.329 | 2.80 | 0.18 | 3.7 | 96.3 | 0.0 | -4.61 | 0.62 | 0.81 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✘ | 6Bo5 | 7119 | 2022-12-18 | 2017-11-18 | 3.6 | 3.71 | — | 3.6 | 0.005 | 1.08 | 0.0 | 0.05 | 12.89 | 0.01 | 2.277 | 11.47 | 1.84 | 9.1 | 90.5 | 0.4 | -5.44 | 0.66 | 0.72 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17236 | 2228 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oSM | 20186 | 2022-12-18 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2022-12-18 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.13 | 0.01 | 1.816 | 16.87 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✘ | 6FBS | 4225 | 2022-12-18 | 2017-12-19 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 6BAJ | 7074 | 2022-12-18 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 15.64 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✘ | 5GJW | 9515 | 2022-12-18 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.011 | 1.50 | 20.0 | 0.08 | 11.50 | 0.01 | 1.844 | 12.84 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 6MHZ | 9124 | 2022-12-18 | 2018-09-18 | 4.1 | 4.03 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 11.43 | 0.01 | 1.258 | 9.19 | 0.39 | 10.0 | 89.9 | 0.1 | -4.72 | 0.50 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 908 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 5TV4 | 8469 | 2022-12-18 | 2016-11-08 | 4.2 | 4.13 | — | 4.0 | 0.008 | 1.22 | 0.0 | 0.06 | 12.84 | 0.01 | 1.248 | 46.46 | 0.48 | 13.1 | 86.2 | 0.7 | -5.82 | 0.48 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6548 | 1140 | 5 | 0 | 17 | 0 | 0 | logfile |
✘ | 6S3K | 10092 | 2022-12-18 | 2019-06-25 | 3.7 | 4.09 | 3.85 | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 15.38 | 0.01 | 2.276 | 5.98 | 0.62 | 10.7 | 89.3 | 0.0 | -4.54 | 0.57 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1146 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6MCC | 9067 | 2022-12-18 | 2018-08-31 | 3.9 | 4.31 | — | 4.2 | 0.006 | 1.04 | 0.0 | 0.15 | 14.86 | 0.01 | 2.290 | 6.05 | 1.08 | 8.5 | 91.5 | 0.0 | -4.52 | 0.79 | 0.81 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14175 | 1494 | 3 | 115 | 1 | 0 | 0 | logfile |
✘ | 6J4Z | 0674 | 2022-12-22 | 2019-01-10 | 4.1 | 4.64 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 19.06 | 0.01 | 1.393 | 7.20 | 0.75 | 4.3 | 95.0 | 0.7 | -1.66 | 0.75 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47463 | 5061 | 34 | 351 | 10 | 0 | 0 | logfile |
✘ | 6E88 | 9004 | 2022-12-21 | 2018-07-27 | 4.8 | 4.77 | — | 4.7 | 0.003 | 0.75 | 0.0 | 0.05 | 11.59 | 0.01 | 2.258 | 7.24 | 0.27 | 4.5 | 95.5 | 0.0 | -4.16 | 0.72 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40908 | 5160 | 24 | 6 | 6 | 0 | 0 | logfile |