Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J0C	9761	2022-12-18	2018-12-23	3.7	3.78	—	3.8	0.006	0.89	0.0	0.05	15.99	0.01	2.313	5.30	3.09	6.5	93.5	0.0	-4.56	0.50	0.83	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33108	4248	12	0	0	0	0	logfile
✘	6RKD	4907	2022-12-18	2019-04-30	3.2	3.12	3.18	3.1	0.010	1.18	0.0	0.07	9.16	0.01	0.176	13.93	0.24	3.1	96.9	0.0	-3.60	0.69	0.82	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25290	3234	24	0	90	0	0	logfile
✘	5GJV	9513	2022-12-18	2016-07-02	3.6	3.69	—	3.7	0.013	1.60	32.0	0.08	14.75	0.01	1.695	18.06	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	6JP8	9867	2022-12-18	2019-03-26	2.7	2.51	—	2.6	0.013	1.46	8.0	0.12	14.43	0.01	1.877	26.01	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✔	6K4Y	9916	2022-12-18	2019-05-27	3.79	3.88	—	3.9	0.008	0.98	0.0	0.06	14.87	0.01	2.242	8.97	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33247	3950	11	105	3	0	0	logfile
✔	5FLM	3218	2022-12-18	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.89	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32712	3896	21	80	9	0	0	logfile
✘	6JEo	9807	2022-12-19	2019-02-06	3.3	3.44	—	3.4	0.009	1.14	0.0	0.06	18.11	0.02	1.212	7.53	0.24	4.8	95.2	0.0	-5.26	0.73	0.81	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✘	5WPV	8883	2022-12-18	2017-08-07	3.59	3.68	—	3.7	0.006	0.90	0.0	0.05	10.97	0.01	2.329	2.80	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14889	1816	9	0	9	0	0	logfile
✘	6Bo5	7119	2022-12-18	2017-11-18	3.6	3.71	—	3.6	0.005	1.08	0.0	0.05	12.89	0.01	2.277	11.47	1.84	9.1	90.5	0.4	-5.44	0.66	0.72	1.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17236	2228	4	0	0	0	0	logfile
✘	6oSM	20186	2022-12-18	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4100	600	10	0	0	0	0	logfile
✔	3JBX	6487	2022-12-18	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.87	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16670	1802	14	116	6	0	0	logfile
✘	6FBS	4225	2022-12-18	2017-12-19	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13421	1665	5	8	3	0	0	logfile
✘	6BAJ	7074	2022-12-18	2017-10-13	3.2	3.67	—	3.6	0.008	1.40	0.0	0.06	15.64	0.01	2.131	6.76	1.74	6.6	93.0	0.4	-4.66	0.60	0.79	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24318	3042	7	0	42	1	0	logfile
✘	5GJW	9515	2022-12-18	2016-07-02	3.9	4.02	—	4.0	0.011	1.50	20.0	0.08	11.50	0.01	1.844	12.84	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	6MHZ	9124	2022-12-18	2018-09-18	4.1	4.03	—	4.0	0.007	1.18	0.0	0.06	11.43	0.01	1.258	9.19	0.39	10.0	89.9	0.1	-4.72	0.50	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7112	908	6	0	2	0	0	logfile
✘	5TV4	8469	2022-12-18	2016-11-08	4.2	4.13	—	4.0	0.008	1.22	0.0	0.06	12.84	0.01	1.248	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6548	1140	5	0	17	0	0	logfile
✘	6S3K	10092	2022-12-18	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.98	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8902	1146	4	0	6	0	0	logfile
✘	6MCC	9067	2022-12-18	2018-08-31	3.9	4.31	—	4.2	0.006	1.04	0.0	0.15	14.86	0.01	2.290	6.05	1.08	8.5	91.5	0.0	-4.52	0.79	0.81	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14175	1494	3	115	1	0	0	logfile
✘	6J4Z	0674	2022-12-22	2019-01-10	4.1	4.64	—	3.0	0.009	1.21	3.0	0.07	19.06	0.01	1.393	7.20	0.75	4.3	95.0	0.7	-1.66	0.75	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47463	5061	34	351	10	0	0	logfile
✘	6E88	9004	2022-12-21	2018-07-27	4.8	4.77	—	4.7	0.003	0.75	0.0	0.05	11.59	0.01	2.258	7.24	0.27	4.5	95.5	0.0	-4.16	0.72	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40908	5160	24	6	6	0	0	logfile

• Page 1 of 443
• next →