Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6Q2R	20578	2022-12-18	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.93	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✘	3JC7	6536	2022-12-20	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.96	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✘	5ZGB	6929	2022-12-19	2018-03-08	3.63	3.79	—	3.7	0.012	1.47	0.0	0.07	18.52	0.02	1.175	15.16	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	6MZJ	9303	2022-12-18	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12653	2088	52	0	149	0	0	logfile
✘	6oMM	20126	2022-12-18	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	1.0	0.06	9.85	0.01	2.222	5.12	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9134	1142	7	0	8	0	0	logfile
✘	5ooC	3836	2022-12-18	2017-08-07	3.6	3.68	3.40	3.7	0.015	1.58	0.0	0.07	12.47	0.02	1.147	9.54	0.00	4.4	92.9	2.7	-1.43	0.66	0.83	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14885	1855	10	0	15	0	0	logfile
✘	6oo7	20148	2022-12-18	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.49	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	3JC5	6535	2022-12-20	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	6PR5	20457	2022-12-18	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10194	960	10	124	6	0	0	logfile
✔	6E8G	9005	2022-12-19	2018-07-29	2.9	3.09	2.96	3.0	0.006	0.89	0.0	0.05	10.62	0.01	2.201	2.53	0.34	0.9	99.1	0.0	-1.52	0.59	0.84	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97272	12276	72	0	0	0	0	logfile
✘	6oo3	20143	2022-12-18	2019-04-22	2.9	3.02	2.79	3.0	0.014	1.22	0.0	0.06	9.99	0.01	2.495	2.38	0.00	3.1	96.9	0.0	-2.84	0.68	0.85	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18236	2404	8	0	4	0	0	logfile
✘	5JXL	8179	2022-12-19	2016-05-13	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76356	10212	12	0	0	0	0	logfile
✘	6oo5	20146	2022-12-18	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.36	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	6oo4	20145	2022-12-18	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	3.19	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✘	6AHR	9626	2022-12-18	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.89	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27851	2595	13	341	1	0	0	logfile
✘	6CNA	7529	2022-12-18	2018-03-07	4.6	5.89	—	5.8	0.006	0.91	0.0	0.05	10.19	0.01	2.021	26.65	0.00	9.7	90.1	0.3	-4.80	0.57	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	3160	14	0	22	0	0	logfile
✘	6oRQ	20178	2022-12-18	2019-04-30	4.4	4.71	4.38	4.5	0.007	1.26	0.0	0.07	12.59	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20176	2430	40	0	83	0	0	logfile
✘	6NT4	0501	2022-12-18	2019-01-28	3.5	4.11	3.77	4.0	0.008	1.07	1.0	0.53	14.99	0.00	1.184	12.03	0.64	12.9	86.7	0.4	-4.72	0.51	0.76	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	5	0	20	0	0	logfile
✘	6M1D	30041	2022-12-18	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21776	2706	4	0	0	0	0	logfile
✘	5ooD	3837	2022-12-18	2017-08-07	3.7	3.73	3.79	3.7	0.016	1.62	0.0	0.07	12.61	0.02	1.149	8.01	0.00	5.5	92.0	2.5	-1.71	0.63	0.81	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile

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