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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Q2R | 20578 | 2022-12-18 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.41 | 0.01 | 1.384 | 4.93 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2022-12-20 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.96 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2022-12-19 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.012 | 1.47 | 0.0 | 0.07 | 18.52 | 0.02 | 1.175 | 15.16 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 6MZJ | 9303 | 2022-12-18 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.50 | 0.0 | 0.08 | 8.01 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✘ | 6oMM | 20126 | 2022-12-18 | 2019-04-19 | 3.17 | 3.31 | — | 3.3 | 0.005 | 0.93 | 1.0 | 0.06 | 9.85 | 0.01 | 2.222 | 5.12 | 0.00 | 3.1 | 96.9 | 0.0 | -2.94 | 0.67 | 0.83 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9134 | 1142 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 5ooC | 3836 | 2022-12-18 | 2017-08-07 | 3.6 | 3.68 | 3.40 | 3.7 | 0.015 | 1.58 | 0.0 | 0.07 | 12.47 | 0.02 | 1.147 | 9.54 | 0.00 | 4.4 | 92.9 | 2.7 | -1.43 | 0.66 | 0.83 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14885 | 1855 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2022-12-18 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 9.52 | 0.01 | 2.273 | 4.49 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2022-12-20 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.35 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PR5 | 20457 | 2022-12-18 | 2019-07-10 | 3.3 | 3.71 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 22.82 | 0.00 | 1.963 | 13.80 | 0.71 | 1.4 | 98.3 | 0.3 | -3.27 | 0.76 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10194 | 960 | 10 | 124 | 6 | 0 | 0 | logfile |
✔ | 6E8G | 9005 | 2022-12-19 | 2018-07-29 | 2.9 | 3.09 | 2.96 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 10.62 | 0.01 | 2.201 | 2.53 | 0.34 | 0.9 | 99.1 | 0.0 | -1.52 | 0.59 | 0.84 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2022-12-18 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 9.99 | 0.01 | 2.495 | 2.38 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5JXL | 8179 | 2022-12-19 | 2016-05-13 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76356 | 10212 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-12-18 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.36 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2022-12-18 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 9.30 | 0.01 | 1.858 | 3.19 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6AHR | 9626 | 2022-12-18 | 2018-08-20 | 3.92 | 4.05 | — | 3.9 | 0.004 | 0.96 | 0.0 | 0.05 | 12.84 | 0.01 | 1.742 | 9.89 | 0.13 | 10.2 | 89.6 | 0.3 | -4.23 | 0.71 | 0.61 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27851 | 2595 | 13 | 341 | 1 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2022-12-18 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.006 | 0.91 | 0.0 | 0.05 | 10.19 | 0.01 | 2.021 | 26.65 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6oRQ | 20178 | 2022-12-18 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.007 | 1.26 | 0.0 | 0.07 | 12.59 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2022-12-18 | 2019-01-28 | 3.5 | 4.11 | 3.77 | 4.0 | 0.008 | 1.07 | 1.0 | 0.53 | 14.99 | 0.00 | 1.184 | 12.03 | 0.64 | 12.9 | 86.7 | 0.4 | -4.72 | 0.51 | 0.76 | 1.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6M1D | 30041 | 2022-12-18 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ooD | 3837 | 2022-12-18 | 2017-08-07 | 3.7 | 3.73 | 3.79 | 3.7 | 0.016 | 1.62 | 0.0 | 0.07 | 12.61 | 0.02 | 1.149 | 8.01 | 0.00 | 5.5 | 92.0 | 2.5 | -1.71 | 0.63 | 0.81 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |