Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7AoE	11842	2022-12-18	2020-10-14	3.9	4.08	—	4.0	0.007	0.92	0.0	0.05	15.84	0.01	1.910	21.75	0.57	11.4	88.3	0.3	-4.07	0.71	0.78	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30828	3768	20	46	6	0	0	logfile
✘	7K0K	22600	2022-12-18	2020-09-04	2.6	2.96	—	2.9	0.006	0.68	0.0	0.05	12.44	0.00	1.915	7.70	0.00	2.2	97.8	0.0	0.53	0.68	0.85	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7615	964	4	0	2	0	0	logfile
✘	7AHE	11784	2022-12-18	2020-09-24	4.1	4.22	4.11	4.1	0.009	1.11	0.0	0.09	12.70	0.00	2.205	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✘	6TRC	10558	2022-12-19	2019-12-18	2.98	3.06	—	3.1	0.010	1.16	0.0	0.07	19.32	0.02	1.220	9.53	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	7CUM	30472	2022-12-18	2020-08-23	3.52	3.83	—	3.8	0.007	1.14	3.0	0.08	14.62	0.01	1.183	10.92	0.34	7.1	92.9	0.0	-4.26	0.69	0.76	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22214	1358	4	0	19	0	10852	logfile
✘	6VXZ	21453	2022-12-18	2020-02-25	3.42	3.56	3.37	3.6	0.011	1.06	0.0	0.06	19.90	0.01	1.959	12.76	2.40	8.1	91.9	0.0	-3.97	0.71	0.81	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13324	1556	8	0	28	0	0	logfile
✘	7LL2	23412	2022-12-19	2021-02-03	3.73	4.36	3.97	3.8	0.013	1.77	3.0	0.10	13.21	0.02	2.531	0.77	0.63	5.9	93.7	0.4	-0.81	0.82	0.76	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25512	3060	48	0	132	0	0	logfile
✘	6TU7	10590	2022-12-18	2020-01-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	6VVY	21407	2022-12-18	2020-02-18	3.42	4.20	—	3.8	0.007	0.87	1.0	0.05	19.81	0.01	1.180	6.21	4.85	7.6	92.3	0.1	-3.95	0.90	0.87	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30033	3516	12	130	4	0	0	logfile
✘	6VVZ	21408	2022-12-18	2020-02-18	3.72	4.46	—	4.0	0.008	0.92	0.0	0.05	20.23	0.01	1.180	9.80	6.36	7.1	92.8	0.1	-3.51	0.90	0.85	1.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29860	3508	12	127	4	0	0	logfile
✘	6PLR	20373	2022-12-18	2019-07-01	3.2	3.44	—	3.4	0.007	0.93	0.0	0.05	8.76	0.01	1.522	4.62	0.00	3.8	96.2	0.0	-4.64	0.64	0.81	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14685	1735	15	0	75	0	0	logfile
✘	6T7S	10371	2022-12-18	2019-10-23	4.5	4.67	—	4.5	0.004	0.93	0.0	0.06	14.16	0.01	2.278	7.26	0.28	6.0	94.0	0.0	-4.74	0.65	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23436	3090	3	0	0	0	0	logfile
✘	7AoD	11841	2022-12-19	2020-10-14	4.5	4.61	—	4.5	0.007	0.89	0.0	0.05	14.84	0.01	1.858	27.44	1.95	10.7	88.9	0.3	-4.20	0.79	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59256	7466	34	0	12	0	0	logfile
✘	7JPW	22425	2022-12-18	2020-08-10	3.2	3.29	—	3.2	0.015	1.06	0.0	0.06	18.76	0.01	2.068	16.08	11.04	9.6	90.3	0.1	-4.54	0.69	0.85	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18583	2257	4	0	12	0	0	logfile
✔	6RPK	4977	2022-12-19	2019-05-14	2.84	2.92	—	2.9	0.006	0.83	0.0	0.05	13.25	0.01	0.152	22.63	0.00	5.5	94.0	0.5	-3.71	0.71	0.83	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103090	12261	61	0	0	0	0	logfile
✘	7AGG	11779	2022-12-18	2020-09-22	3.3	3.68	—	3.6	0.007	0.79	0.0	0.05	13.16	0.01	1.980	6.95	0.00	4.2	95.8	0.0	-1.18	0.83	0.80	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8252	1056	5	0	0	0	0	logfile
✘	7CMi	30407	2022-12-18	2020-07-27	2.9	3.36	—	3.3	0.006	1.00	0.0	0.05	15.26	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7353	928	7	0	10	6	0	logfile
✘	6YUZ	10936	2022-12-18	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.55	1.0	0.04	13.88	0.00	2.235	6.15	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9782	1188	4	0	10	0	0	logfile
✘	7CX2	30489	2022-12-18	2020-09-01	2.8	3.21	—	3.1	0.004	0.71	0.0	0.05	13.59	0.01	1.994	8.73	0.12	3.7	96.3	0.0	-2.13	0.69	0.82	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7930	1020	6	0	1	1	0	logfile
✘	7D5i	30582	2022-12-18	2020-09-26	2.79	2.96	—	3.0	0.005	0.71	0.0	0.04	13.37	0.00	1.220	6.64	0.00	8.3	91.7	0.0	-1.65	0.65	0.88	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6232	793	3	0	3	0	0	logfile

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