Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7E2Y	30972	2022-07-03	2021-02-07	3.0	3.40	—	3.4	0.005	0.54	0.0	0.04	10.91	0.00	1.185	4.71	0.00	1.1	98.9	0.0	1.91	0.53	0.68	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6987	868	4	0	6	0	0	logfile
✘	6XL5	22234	2022-07-07	2020-06-28	2.5	3.07	—	3.0	0.010	0.93	0.0	0.06	16.91	0.01	1.394	7.64	0.00	0.8	99.2	0.0	-2.54	0.74	0.86	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35828	4220	20	108	10	42	0	logfile
✘	7JRo	22447	2022-07-03	2020-08-12	3.8	3.86	3.82	3.9	0.009	1.03	0.0	0.05	15.90	0.01	1.282	14.56	0.08	9.2	90.8	0.1	-0.46	0.61	0.85	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12747	1492	17	0	26	0	0	logfile
✘	7D1T	30547	2022-07-02	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	6XLJ	22245	2022-07-07	2020-06-28	2.7	3.34	—	3.2	0.014	1.03	1.0	0.07	17.16	0.01	1.393	8.60	0.16	1.7	98.3	0.0	-3.00	0.75	0.81	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35902	4221	17	111	13	0	0	logfile
✘	6XLK	22246	2022-07-03	2020-06-28	3.3	3.63	—	3.5	0.008	0.72	0.0	0.05	20.19	0.00	1.395	5.81	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5456	536	6	46	4	0	0	logfile
✘	6XZB	10657	2022-07-08	2020-02-03	2.54	3.99	—	3.8	0.006	0.62	1.0	0.04	14.32	0.01	0.178	7.13	2.93	3.1	96.4	0.4	-1.96	0.75	0.71	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	145650	5732	55	4692	1	0	0	logfile
✘	7ARL	11886	2022-07-03	2020-10-25	3.2	3.44	—	3.5	0.003	0.73	0.0	0.05	13.09	0.00	2.378	3.27	0.00	4.6	95.4	0.0	-5.83	0.62	0.73	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9467	1256	9	0	6	0	0	logfile
✘	6XZA	10656	2022-07-07	2020-02-03	2.66	4.00	—	3.8	0.006	0.66	1.0	0.04	14.20	0.00	0.349	6.78	2.91	3.1	96.4	0.4	-1.96	0.72	0.68	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	143983	5732	54	4616	1	0	0	logfile
✘	7AAP	11692	2022-07-03	2020-09-04	2.5	2.71	2.48	2.8	0.002	0.47	0.0	0.04	12.42	0.00	1.236	3.74	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9446	1120	9	21	7	0	0	logfile
✔	6YBA	10768	2022-07-06	2020-03-16	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98037	12388	26	0	0	0	0	logfile
✘	6WHA	21669	2022-07-03	2020-04-07	3.36	3.16	—	3.4	0.012	1.20	2.0	0.08	13.68	0.01	2.284	7.10	2.99	4.1	95.9	0.0	-0.19	0.78	0.85	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7888	1074	6	0	1	0	0	logfile
✘	7CoY	30420	2022-07-03	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.73	5.0	0.10	14.13	0.01	1.106	11.63	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile
✘	7KJ4	22893	2022-07-07	2020-10-25	3.4	3.48	—	3.4	0.013	1.83	14.0	0.14	14.56	0.01	1.904	4.98	2.36	6.1	93.4	0.5	-2.39	0.67	0.71	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38776	4722	36	0	90	0	0	logfile
✘	7DFL	30665	2022-07-03	2020-11-09	3.3	4.03	—	3.9	0.008	0.95	0.0	0.06	11.96	0.01	1.313	10.06	0.00	6.1	93.9	0.0	-0.96	0.63	0.75	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8987	1133	6	0	1	0	0	logfile
✘	7D1U	30548	2022-07-08	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✘	7KC2	22805	2022-07-03	2020-10-04	2.67	3.44	—	3.4	0.008	0.70	0.0	0.05	13.47	0.00	2.216	9.56	0.00	5.2	94.8	0.0	-2.73	0.76	0.82	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10192	1388	12	0	12	4	0	logfile
✘	6VP9	21307	2022-07-03	2020-02-02	3.46	3.63	—	3.6	0.005	0.63	0.0	0.04	15.20	0.00	1.229	21.74	0.00	9.4	90.6	0.0	-3.63	0.77	0.86	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8610	1077	4	0	1	0	0	logfile
✘	7KRP	23009	2022-07-03	2020-11-20	3.2	3.57	—	3.6	0.004	0.59	0.0	0.04	12.31	0.00	1.226	6.16	4.18	2.9	97.1	0.0	-1.51	0.65	0.64	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12561	1373	8	73	7	0	0	logfile
✘	7KRN	23007	2022-07-04	2020-11-20	3.4	3.94	—	3.9	0.007	0.71	0.0	0.05	13.82	0.00	1.225	9.15	7.54	8.6	91.4	0.0	-2.51	0.77	0.82	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17351	1963	9	80	13	0	0	logfile

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