Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RW9	10035	2022-12-19	2019-06-04	3.27	3.69	—	3.3	0.008	1.09	0.0	0.06	9.91	0.01	2.258	6.10	0.37	6.7	93.2	0.0	-3.60	0.85	0.80	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	88700	11425	5	0	0	0	0	logfile
✘	6UiA	20784	2022-12-18	2019-09-30	4.3	4.41	—	4.3	0.020	1.71	18.0	0.09	15.65	0.01	1.174	14.61	1.60	8.4	90.9	0.7	-4.29	0.70	0.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31720	4084	6	0	2	0	0	logfile
✘	6UUZ	20903	2022-12-18	2019-11-01	3.0	3.14	—	3.1	0.007	1.03	0.0	0.06	13.18	0.01	1.219	8.06	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31818	4084	10	0	4	2	0	logfile
✘	6C0W	7326	2022-12-18	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.30	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13122	925	11	278	0	0	0	logfile
✘	6RBD	4792	2022-12-19	2019-04-10	3.47	3.74	3.51	2.5	0.006	0.97	0.0	0.05	16.65	0.01	2.223	6.37	0.28	5.3	94.6	0.0	-3.01	0.90	0.81	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81048	5450	35	1777	0	0	0	logfile
✘	5W64	8774	2022-12-21	2017-06-16	4.2	4.52	—	4.1	0.009	1.56	58.0	0.09	14.95	0.01	1.006	104.40	5.36	8.8	87.1	4.1	-3.53	0.72	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46512	5505	25	102	59	0	0	logfile
✘	5YKG	6833	2022-12-22	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.43	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✘	6KMW	0726	2022-12-19	2019-08-01	2.35	2.41	—	2.4	0.026	2.51	0.0	0.08	20.93	0.03	1.212	6.39	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✘	6Jo5	9853	2022-12-22	2019-03-20	2.9	2.97	—	2.9	0.028	2.73	0.0	0.09	18.14	0.02	1.209	12.17	0.43	4.0	96.0	0.1	-2.29	0.79	0.84	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48476	4170	40	0	313	0	0	logfile
✘	6CB8	7449	2022-12-19	2018-02-02	3.8	4.12	—	4.3	0.006	0.84	0.0	0.05	11.53	0.01	0.173	75.29	0.00	18.6	81.4	0.0	-5.72	0.54	0.26	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103936	6440	28	0	28	0	52304	logfile
✘	2XEA	1730	2022-12-19	2010-05-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63950	7700	100	150	0	0	0	logfile
✘	6UUW	20902	2022-12-18	2019-11-01	2.85	2.97	—	3.0	0.006	0.87	0.0	0.06	13.53	0.01	1.169	4.22	0.96	3.1	96.9	0.0	-3.28	0.74	0.82	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32438	4136	12	0	14	27	0	logfile
✘	6oSM	20186	2022-12-18	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4100	600	10	0	0	0	0	logfile
✘	6G2H	4343	2022-12-19	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.14	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✘	6HiZ	0233	2022-12-19	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.06	0.01	1.866	11.28	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76845	9056	33	143	19	3	0	logfile
✘	6BAJ	7074	2022-12-18	2017-10-13	3.2	3.67	—	3.6	0.008	1.40	0.0	0.06	15.64	0.01	2.131	6.76	1.74	6.6	93.0	0.4	-4.66	0.60	0.79	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24318	3042	7	0	42	1	0	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✘	6iP2	9698	2022-12-18	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24660	3120	12	0	12	0	0	logfile
✘	6C9Y	7438	2022-12-18	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.66	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28920	3685	7	0	3	0	0	logfile
✘	5ZJi	6932	2022-12-21	2018-03-20	3.3	3.39	—	3.4	0.012	1.48	0.0	0.11	16.64	0.01	1.204	8.01	0.45	6.4	93.6	0.0	-3.56	0.68	0.84	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44708	4087	40	0	271	0	0	logfile

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