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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6KUP | 9579 | 2024-03-15 | 2019-09-02 | 4.3 | 4.37 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.44 | 0.01 | 2.227 | 6.50 | 0.16 | 7.1 | 92.6 | 0.2 | -4.90 | 0.71 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12254 | 1461 | 5 | 23 | 0 | 0 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2024-03-18 | 2022-07-18 | 4.1 | 3.85 | 3.29 | 3.9 | 0.011 | 1.10 | 3.0 | 0.06 | 19.21 | 0.01 | 2.082 | 14.69 | 0.87 | 5.7 | 94.3 | 0.0 | -1.40 | 0.44 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 7XUG | 33468 | 2024-03-20 | 2022-05-18 | 3.57 | 3.53 | — | 3.6 | 0.009 | 0.87 | 0.0 | 0.05 | 16.50 | 0.01 | 1.938 | 6.66 | 0.11 | 8.9 | 91.0 | 0.1 | -2.20 | 0.77 | 0.82 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26026 | 3172 | 9 | 60 | 3 | 0 | 0 | logfile |
✘ | 7DXA | 30902 | 2024-03-16 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15162 | 1629 | 23 | 0 | 50 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2024-03-18 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-03-16 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VG2 | 31963 | 2024-03-11 | 2021-09-14 | 3.1 | 2.73 | — | 3.0 | 0.016 | 1.43 | 1.0 | 0.09 | 16.55 | 0.01 | 1.822 | 17.56 | 1.74 | 8.0 | 91.8 | 0.2 | -3.84 | 0.72 | 0.79 | 3.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8203 | 845 | 4 | 71 | 3 | 0 | 0 | logfile |
✘ | 8DQ0 | 27645 | 2024-03-18 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 16.04 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 6SYT | 10347 | 2024-03-17 | 2019-10-01 | 3.45 | 3.54 | — | 3.5 | 0.018 | 1.23 | 0.0 | 0.16 | 11.02 | 0.01 | 1.903 | 3.04 | 0.13 | 7.5 | 92.4 | 0.1 | -5.37 | 0.69 | 0.81 | 4.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18369 | 2369 | 5 | 0 | 216 | 0 | 0 | logfile |
✘ | 7SRR | 25402 | 2024-03-15 | 2021-11-08 | 2.9 | 2.20 | — | 2.0 | 0.005 | 0.67 | 0.0 | 0.05 | 12.70 | 0.00 | 2.196 | 3.95 | 0.12 | 3.4 | 96.6 | 0.0 | 0.15 | 0.80 | 0.78 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8394 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 5UJZ | 8561 | 2024-03-22 | 2017-01-19 | 4.8 | 5.22 | — | 5.1 | 0.010 | 1.28 | 0.0 | 0.06 | 12.10 | 0.01 | 2.072 | 3.55 | 0.16 | 7.6 | 92.3 | 0.1 | -3.77 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 6RAJ | 4777 | 2024-03-15 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 5UK2 | 8564 | 2024-03-22 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 12.49 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7ZZ6 | 15036 | 2024-03-11 | 2022-05-25 | 2.15 | 2.39 | 2.12 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 17.30 | 0.00 | 1.385 | 8.71 | 3.48 | 2.9 | 97.1 | 0.0 | 0.64 | 0.91 | 0.90 | 4.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8257 | 1017 | 6 | 0 | 6 | 157 | 0 | logfile |
✘ | 7UFi | 26476 | 2024-03-17 | 2022-03-22 | 3.4 | 2.59 | 3.36 | 3.1 | 0.013 | 1.83 | 0.0 | 0.08 | 20.09 | 0.00 | 1.645 | 3.99 | 11.94 | 9.1 | 90.4 | 0.5 | -3.89 | 0.66 | 0.70 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18319 | 2177 | 16 | 42 | 7 | 0 | 0 | logfile |
✘ | 7ZZ2 | 15032 | 2024-03-10 | 2022-05-25 | 2.48 | 2.80 | 2.37 | 2.1 | 0.005 | 0.76 | 0.0 | 0.05 | 17.25 | 0.01 | 2.132 | 4.21 | 3.27 | 2.2 | 97.8 | 0.0 | -0.30 | 0.90 | 0.89 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4366 | 541 | 1 | 0 | 3 | 57 | 0 | logfile |
✘ | 6PCi | 20301 | 2024-03-17 | 2019-06-17 | 4.12 | 4.25 | — | 4.1 | 0.009 | 1.05 | 0.0 | 0.06 | 10.80 | 0.01 | 2.268 | 6.36 | 0.00 | 6.8 | 93.2 | 0.0 | -2.72 | 0.85 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18828 | 2382 | 24 | 0 | 27 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2024-03-19 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 6JZo | 9898 | 2024-03-18 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Qi8 | 4552 | 2024-03-16 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |