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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5FYW | 3378 | 2024-03-24 | 2016-03-10 | 4.35 | 4.82 | — | 4.3 | 0.010 | 1.14 | 2.0 | 0.07 | 12.92 | 0.01 | 0.245 | 17.00 | 0.77 | 5.4 | 94.1 | 0.5 | -2.84 | 0.80 | 0.75 | — | 4.3 | 0.005 | 0.75 | 0.0 | 0.04 | 14.52 | 0.00 | 1.914 | 20.04 | 0.02 | 6.3 | 93.5 | 0.2 | 0.22 | 2.89 | 0.83 | 0.81 | — | 41710 | 5176 | 30 | 94 | 11 | 0 | 0 | logfile |
✔ | 7o7P | 12752 | 2024-03-24 | 2021-04-13 | 4.6 | 5.15 | — | 6.0 | 0.009 | 1.15 | 2.0 | 0.08 | 15.25 | 0.01 | 1.908 | 11.62 | 0.13 | 12.6 | 87.0 | 0.3 | -4.55 | 0.80 | 0.69 | — | 5.8 | 0.004 | 0.87 | 0.0 | 0.05 | 14.09 | 0.01 | 2.010 | 27.64 | 0.04 | 11.4 | 88.5 | 0.1 | -2.92 | 1.50 | 0.83 | 0.75 | — | 40295 | 5100 | 16 | 0 | 36 | 0 | 0 | logfile |
✘ | 6PK7 | 20355 | 2024-03-17 | 2019-06-28 | 3.1 | 3.55 | — | 3.5 | 0.011 | 1.25 | 8.0 | 0.07 | 12.86 | 0.01 | 1.655 | 11.20 | 0.41 | 8.6 | 91.2 | 0.2 | -4.98 | 0.66 | 0.81 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17820 | 2228 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7TLD | 25988 | 2024-03-19 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTP | 23025 | 2024-03-15 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.15 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 1.215 | 13.63 | 0.00 | 4.7 | 95.3 | 0.0 | -0.82 | 2.22 | 0.75 | 0.76 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 5W9L | 8787 | 2024-03-21 | 2017-06-23 | 4.8 | 4.95 | 4.82 | 4.8 | 0.014 | 1.71 | 0.0 | 0.08 | 10.52 | 0.01 | 1.520 | 4.48 | 0.06 | 4.5 | 94.7 | 0.9 | 0.78 | 0.75 | 0.76 | — | 4.8 | 0.006 | 0.85 | 0.0 | 0.04 | 12.97 | 0.01 | 2.012 | 22.26 | 0.00 | 8.3 | 91.4 | 0.2 | -1.25 | 1.72 | 0.76 | 0.80 | — | 31118 | 4020 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FD9 | 31537 | 2024-03-15 | 2021-07-16 | 4.0 | 4.34 | 3.85 | 3.8 | 0.007 | 1.28 | 0.0 | 0.13 | 17.54 | 0.00 | 2.266 | 9.05 | 0.00 | 6.4 | 93.6 | 0.0 | -0.84 | 0.71 | 0.80 | — | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 14.70 | 0.00 | 2.186 | 12.10 | 1.94 | 6.4 | 93.6 | 0.0 | -0.32 | 0.99 | 0.72 | 0.82 | — | 11476 | 1534 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7KSR | 23024 | 2024-03-15 | 2020-11-24 | 4.1 | 4.28 | — | 4.2 | 0.004 | 0.70 | 0.0 | 0.05 | 11.74 | 0.00 | 2.200 | 1.91 | 0.00 | 5.5 | 94.5 | 0.0 | -4.46 | 0.65 | 0.70 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.13 | 0.00 | 1.810 | 10.44 | 0.00 | 4.8 | 95.2 | 0.0 | -1.11 | 1.08 | 0.69 | 0.77 | — | 11863 | 1524 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 6G9o | 4367 | 2024-03-23 | 2018-04-11 | 4.25 | 4.47 | — | 4.2 | 0.007 | 0.84 | 0.0 | 0.05 | 8.43 | 0.01 | 2.233 | 1.39 | 0.00 | 4.0 | 96.0 | 0.0 | -2.09 | 0.74 | 0.81 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 10.93 | 0.00 | 2.189 | 9.84 | 0.00 | 3.9 | 96.1 | 0.0 | -0.20 | 1.31 | 0.75 | 0.83 | — | 35532 | 4308 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R92 | 4766 | 2024-03-24 | 2019-04-02 | 4.8 | 6.24 | — | 5.4 | 0.009 | 1.11 | 6.0 | 0.09 | 23.88 | 0.01 | 2.054 | 4.33 | 0.36 | 5.0 | 94.7 | 0.4 | -1.02 | 0.87 | 0.72 | — | 5.4 | 0.005 | 0.74 | 0.0 | 0.06 | 24.44 | 0.00 | 1.876 | 22.26 | 0.00 | 8.5 | 91.4 | 0.1 | -2.09 | 1.37 | 0.88 | 0.74 | — | 40519 | 1974 | 12 | 290 | 0 | 0 | 19019 | logfile |
✘ | 8AG4 | 15415 | 2024-03-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPP | 14860 | 2024-03-22 | 2022-04-28 | 4.5 | 3.20 | 4.54 | 4.6 | 0.003 | 0.64 | 0.0 | 0.04 | 15.32 | 0.00 | 2.166 | 11.62 | 0.00 | 3.8 | 96.1 | 0.1 | 0.57 | 0.62 | 0.53 | — | 4.4 | 0.004 | 0.81 | 1.0 | 0.05 | 15.82 | 0.00 | 2.067 | 19.12 | 0.03 | 5.2 | 94.7 | 0.1 | -0.45 | 1.73 | 0.67 | 0.66 | — | 33171 | 3903 | 20 | 80 | 0 | 0 | 0 | logfile |
✔ | 7oCY | 12816 | 2024-03-11 | 2021-04-28 | 4.25 | 4.55 | 4.29 | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 12.49 | 0.00 | 1.980 | 9.97 | 0.00 | 4.9 | 95.1 | 0.0 | -0.08 | 0.73 | 0.77 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 12.51 | 0.00 | 2.163 | 11.82 | 0.00 | 3.2 | 96.8 | 0.0 | 1.02 | 1.86 | 0.74 | 0.79 | — | 7994 | 1243 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BR7 | 30158 | 2024-03-16 | 2020-03-26 | 4.3 | 3.99 | — | 4.0 | 0.006 | 0.94 | 0.0 | 0.06 | 15.20 | 0.01 | 1.573 | 8.92 | 0.70 | 6.8 | 93.2 | 0.0 | -4.57 | 0.44 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73138 | 9263 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UW9 | 26825 | 2024-03-25 | 2022-05-03 | 4.2 | 4.40 | 4.30 | 2.2 | 0.003 | 0.62 | 2.0 | 0.04 | 10.30 | 0.00 | 2.207 | 7.60 | 1.21 | 3.9 | 96.0 | 0.1 | 2.14 | 0.79 | 0.78 | — | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 10.11 | 0.00 | 2.148 | 7.79 | 0.00 | 4.5 | 95.5 | 0.1 | 2.29 | 1.67 | 0.80 | 0.79 | — | 46156 | 7764 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 7o7L | 12747 | 2024-03-24 | 2021-04-13 | 4.5 | 5.42 | — | 6.7 | 0.008 | 1.16 | 8.0 | 0.08 | 16.57 | 0.02 | 2.027 | 13.41 | 0.49 | 16.8 | 82.5 | 0.7 | -5.47 | 0.80 | 0.63 | — | 6.7 | 0.003 | 0.88 | 0.0 | 0.05 | 14.80 | 0.01 | 2.049 | 19.04 | 0.06 | 11.9 | 87.9 | 0.2 | -3.58 | 1.47 | 0.81 | 0.67 | — | 44614 | 5640 | 14 | 0 | 44 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2024-03-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MET | 9109 | 2024-03-15 | 2018-09-07 | 4.5 | 4.68 | 4.22 | 4.4 | 0.007 | 1.08 | 0.0 | 0.07 | 13.54 | 0.01 | 1.985 | 12.02 | 1.37 | 8.0 | 91.5 | 0.5 | -4.19 | 0.58 | 0.54 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.05 | 11.07 | 0.00 | 2.084 | 17.31 | 0.00 | 7.2 | 92.6 | 0.2 | -1.82 | 1.21 | 0.69 | 0.81 | — | 8911 | 1074 | 14 | 0 | 32 | 0 | 0 | logfile |
✔ | 7o7S | 12755 | 2024-03-24 | 2021-04-13 | 4.3 | 4.69 | — | 4.4 | 0.009 | 1.28 | 7.0 | 0.07 | 17.31 | 0.02 | 1.857 | 21.65 | 1.09 | 20.1 | 79.2 | 0.7 | -5.96 | 0.75 | 0.58 | — | 4.4 | 0.004 | 0.90 | 0.0 | 0.05 | 14.92 | 0.01 | 2.066 | 25.76 | 0.02 | 13.7 | 86.1 | 0.1 | -3.99 | 1.38 | 0.76 | 0.61 | — | 41466 | 5236 | 17 | 0 | 44 | 0 | 0 | logfile |
✘ | 7M6Q | 23704 | 2024-03-16 | 2021-03-26 | 2.91 | 3.75 | 2.97 | 3.5 | 0.009 | 1.16 | 5.0 | 0.07 | 15.90 | 0.01 | 2.289 | 5.71 | 0.00 | 3.1 | 96.9 | 0.0 | -0.39 | 0.82 | 0.82 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14725 | 1800 | 10 | 0 | 10 | 0 | 0 | logfile |