Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7WTD	32779	2023-04-28	2022-02-04	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27137	3491	6	0	4	0	0	logfile
✔	7B1B	11982	2023-04-22	2020-11-24	4.23	6.70	4.32	4.1	0.004	0.75	0.0	0.05	14.14	0.01	2.087	33.07	0.54	13.6	86.4	0.0	-2.84	0.88	0.83	—	4.2	0.004	0.73	0.0	0.04	12.18	0.00	2.035	31.45	0.00	13.7	86.2	0.1	-2.93	0.92	0.88	0.83	—	12870	1697	12	0	22	0	0	logfile
✘	8DK2	27481	2023-04-26	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.54	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23727	2840	12	52	4	0	0	logfile
✔	6S6T	10105	2023-04-20	2019-07-03	4.1	4.22	4.17	4.1	0.024	0.98	0.0	0.08	12.90	0.00	1.163	8.26	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	4.1	0.003	0.82	0.0	0.05	13.22	0.00	1.783	9.34	0.05	5.4	94.6	0.0	-1.22	1.53	0.74	0.83	—	56543	7304	14	0	17	0	0	logfile
✔	6CP7	7549	2023-04-21	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.004	0.93	0.0	0.04	12.55	0.00	2.175	18.15	0.00	5.3	94.7	0.0	-0.79	1.03	0.51	0.70	—	9164	1234	16	0	0	0	0	logfile
✔	6VN0	21246	2023-04-25	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.76	0.0	0.10	10.80	0.01	2.270	1.83	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.4	0.003	0.76	0.0	0.05	13.05	0.00	2.086	11.53	0.10	6.0	93.6	0.4	-0.52	1.83	0.73	0.80	—	19962	2364	51	0	105	0	0	logfile
✔	3J9K	2870	2023-04-26	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.51	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.77	0.0	0.04	13.66	0.00	2.071	16.76	0.01	5.4	94.5	0.2	-1.08	1.15	0.69	0.70	—	126512	10352	48	0	8304	0	0	logfile
✘	7M5Y	23685	2023-04-23	2021-03-25	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15447	1000	1	0	24	8	7534	logfile
✘	7WoR	32656	2023-04-29	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✘	6Vi0	21208	2023-04-25	2020-01-10	3.43	3.96	3.49	3.8	0.008	1.12	3.0	0.10	13.99	0.01	2.241	6.11	1.23	7.8	92.0	0.2	-5.43	0.80	0.83	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20823	2418	45	0	135	0	0	logfile
✔	7QTJ	14142	2023-04-21	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	13.80	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.003	0.66	0.0	0.04	13.18	0.00	2.073	11.25	0.00	5.7	94.1	0.2	-0.53	0.46	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7Z4E	14494	2023-04-24	2022-03-03	4.14	5.32	4.15	4.2	0.004	0.55	0.0	0.04	15.77	0.00	2.196	9.63	1.64	2.0	98.0	0.0	0.67	0.88	0.76	—	4.3	0.004	0.61	0.0	0.04	16.22	0.00	2.159	18.25	0.00	3.5	96.5	0.0	0.86	3.44	0.90	0.81	—	14069	1357	4	142	0	0	0	logfile
✔	7PH5	13407	2023-04-22	2021-08-16	4.0	4.33	4.10	4.2	0.007	0.78	0.0	0.04	27.45	0.01	0.679	13.94	0.42	3.7	96.3	0.0	0.43	0.72	0.65	—	4.2	0.006	0.63	0.0	0.03	27.57	0.00	1.857	44.35	0.98	5.4	94.6	0.0	1.19	2.40	0.82	0.86	—	13483	856	11	290	0	0	713	logfile
✘	7M5V	23683	2023-04-24	2021-03-24	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16295	1046	1	0	24	6	7985	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6TD6	10464	2023-04-23	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✘	7WTP	32794	2023-04-19	2022-02-05	3.8	3.62	—	3.4	0.007	0.96	0.0	0.05	16.68	0.01	2.103	8.20	0.04	8.7	91.1	0.1	-2.27	0.83	0.82	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52944	3296	20	1255	1	0	0	logfile
✔	8A1S	15086	2023-04-24	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.76	0.0	0.05	12.92	0.01	2.069	15.85	0.36	4.4	95.5	0.2	-1.00	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✔	7DZY	30921	2023-04-24	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	6PM4	20386	2023-04-23	2019-07-01	4.0	5.19	—	4.0	0.007	0.96	0.0	0.05	10.22	0.01	2.236	7.62	0.00	9.9	90.1	0.0	-4.33	0.76	0.85	—	3.8	0.003	0.84	0.0	0.04	12.96	0.00	2.171	18.81	0.27	6.3	93.7	0.0	-1.27	1.21	0.77	0.85	—	14055	1735	15	0	15	0	0	logfile

• Page 1 of 372
• next →