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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ZSU | 6952 | 2024-03-23 | 2018-04-29 | 4.25 | 4.38 | 2.97 | 4.3 | 0.006 | 1.14 | 3.0 | 0.06 | 10.79 | 0.01 | 2.286 | 13.27 | 0.76 | 11.3 | 88.7 | 0.0 | -4.45 | 0.68 | 0.75 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 12.33 | 0.00 | 2.112 | 16.17 | 0.00 | 8.7 | 91.3 | 0.0 | -1.61 | 1.90 | 0.70 | 0.77 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DZW | 8941 | 2024-03-11 | 2018-07-05 | 4.3 | 4.31 | 5.22 | 4.9 | 0.004 | 0.87 | 0.0 | 0.09 | 13.75 | 0.01 | 2.052 | 3.87 | 0.36 | 3.2 | 96.8 | 0.0 | -4.99 | 0.45 | 0.53 | — | 4.9 | 0.003 | 0.72 | 0.0 | 0.04 | 13.54 | 0.00 | 2.149 | 16.24 | 0.12 | 4.9 | 95.1 | 0.0 | -1.32 | 1.74 | 0.48 | 0.60 | — | 7829 | 988 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7D74 | 30601 | 2024-03-23 | 2020-10-02 | 3.1 | 2.42 | — | 3.0 | 0.009 | 1.38 | 1.0 | 0.08 | 19.73 | 0.01 | 1.922 | 10.36 | 8.87 | 4.8 | 94.8 | 0.4 | -2.46 | 0.51 | 0.65 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35353 | 4503 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 8E97 | 27958 | 2024-03-18 | 2022-08-26 | 4.19 | 3.55 | 4.21 | 3.4 | 0.007 | 1.06 | 6.0 | 0.07 | 14.17 | 0.01 | 1.822 | 12.52 | 1.35 | 13.4 | 85.9 | 0.7 | -5.58 | 0.60 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20374 | 3074 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 6WXV | 21964 | 2024-03-15 | 2020-05-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10605 | 1319 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 6SJE | 10215 | 2024-03-19 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.75 | 0.01 | 2.264 | 4.40 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.18 | 0.00 | 2.121 | 12.18 | 0.04 | 3.1 | 96.9 | 0.0 | 0.84 | 1.76 | 0.84 | 0.81 | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✘ | 7TQV | 26073 | 2024-03-17 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 10.87 | 0.00 | 2.162 | 5.00 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2024-03-22 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.006 | 0.98 | 0.0 | 0.05 | 15.00 | 0.01 | 2.079 | 18.28 | 0.00 | 10.5 | 89.0 | 0.5 | -1.76 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2024-03-14 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.93 | 0.00 | 2.337 | 2.35 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.04 | 15.62 | 0.00 | 2.141 | 17.60 | 3.29 | 2.2 | 97.8 | 0.0 | 0.36 | 2.52 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6V3G | 21036 | 2024-03-20 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.47 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.80 | 0.00 | 2.164 | 13.19 | 1.94 | 3.3 | 96.7 | 0.0 | -0.46 | 0.85 | 0.72 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PVA | 17959 | 2024-03-20 | 2023-07-17 | 4.5 | 3.88 | 4.43 | 3.6 | 0.011 | 1.59 | 4.0 | 0.10 | 22.96 | 0.02 | 1.936 | 1.56 | 3.61 | 3.6 | 96.2 | 0.2 | -1.53 | 0.82 | 0.74 | — | 3.6 | 0.006 | 0.81 | 0.0 | 0.04 | 22.94 | 0.01 | 1.969 | 22.97 | 0.00 | 6.9 | 93.0 | 0.1 | -1.33 | 4.19 | 0.85 | 0.82 | — | 141565 | 5585 | 58 | 4555 | 4 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2024-03-17 | 2013-10-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18556 | 2448 | 8 | 0 | 44 | 0 | 292 | logfile |
✘ | 7oZV | 13138 | 2024-03-11 | 2021-06-28 | 3.2 | 3.08 | 3.16 | 3.3 | 0.007 | 0.58 | 0.0 | 0.04 | 15.02 | 0.01 | 2.202 | 8.41 | 0.00 | 2.6 | 97.4 | 0.0 | -0.22 | 0.64 | 0.79 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8409 | 991 | 6 | 22 | 2 | 0 | 0 | logfile |
✘ | 7UZE | 26886 | 2024-03-16 | 2022-05-09 | 2.4 | 2.27 | 2.42 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.97 | 0.00 | 2.040 | 3.56 | 0.68 | 3.0 | 96.6 | 0.4 | 1.69 | 0.66 | 0.88 | 6.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14969 | 988 | 12 | 0 | 4 | 113 | 7392 | logfile |
✔ | 7DBP | 30161 | 2024-03-16 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.26 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.03 | 29.51 | 0.00 | 2.086 | 23.95 | 0.00 | 3.3 | 96.7 | 0.0 | 1.22 | 2.51 | 0.90 | 0.75 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2024-03-10 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 10.92 | 0.00 | 2.098 | 9.36 | 0.00 | 6.0 | 94.0 | 0.0 | -4.87 | 1.08 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2024-03-17 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 12.93 | 0.00 | 2.069 | 21.65 | 0.00 | 7.1 | 92.4 | 0.4 | -0.07 | 1.80 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2024-03-16 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✘ | 8iN8 | 35592 | 2024-03-11 | 2023-03-08 | 3.0 | 3.19 | 3.04 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 21.50 | 0.01 | 1.950 | 10.16 | 3.63 | 6.1 | 93.7 | 0.1 | -0.30 | 0.71 | 0.75 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6663 | 724 | 5 | 47 | 1 | 0 | 0 | logfile |
✔ | 6iRA | 9714 | 2024-03-19 | 2018-11-12 | 4.5 | 5.18 | — | 5.1 | 0.009 | 1.42 | 13.0 | 0.07 | 8.45 | 0.01 | 1.413 | 20.24 | 0.12 | 10.0 | 89.1 | 0.9 | -3.53 | 0.60 | 0.69 | — | 5.1 | 0.003 | 0.80 | 0.0 | 0.05 | 12.20 | 0.00 | 2.066 | 19.67 | 0.00 | 8.5 | 91.2 | 0.3 | -1.49 | 2.16 | 0.62 | 0.74 | — | 23932 | 3080 | 4 | 0 | 0 | 0 | 0 | logfile |