Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CA3	30323	2023-02-23	2020-06-08	4.5	4.65	—	4.5	0.017	1.30	4.0	0.17	15.78	0.01	1.348	20.45	1.01	15.2	84.2	0.6	-4.98	0.62	0.69	—	4.5	0.003	0.79	2.0	0.10	14.02	0.00	1.893	17.02	0.09	10.3	89.6	0.1	-2.11	1.15	0.65	0.81	—	19862	1350	4	0	4	0	9307	logfile
✔	6T7S	10371	2023-02-24	2019-10-23	4.5	4.67	—	4.5	0.004	0.93	0.0	0.06	14.16	0.01	2.278	7.26	0.28	6.0	94.0	0.0	-4.74	0.65	0.77	—	4.5	0.003	0.81	0.0	0.04	13.18	0.00	2.047	16.04	0.00	6.0	93.9	0.1	-1.26	3.57	0.66	0.74	—	23436	3090	3	0	0	0	0	logfile
✔	6CRQ	7568	2023-02-23	2018-03-19	4.2	3.69	4.20	4.1	0.014	1.44	1.0	0.08	11.39	0.01	1.839	7.27	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.007	0.86	0.0	0.05	13.70	0.01	2.091	14.63	0.00	7.3	92.7	0.0	-0.72	1.45	0.68	0.78	—	20271	2391	54	0	105	0	0	logfile
✔	6C14	7328	2023-02-19	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.003	0.82	0.0	0.05	12.10	0.00	2.148	17.50	0.27	4.4	95.6	0.0	-1.74	1.91	0.57	0.71	—	6746	860	4	0	0	0	0	logfile
✘	6WEK	21650	2023-02-22	2020-04-02	2.7	3.19	—	3.1	0.019	1.56	24.0	0.08	15.78	0.01	1.988	10.13	4.95	4.8	95.2	0.0	-1.65	0.63	0.81	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17616	2048	8	0	32	0	0	logfile
✔	6MET	9109	2023-02-19	2018-09-07	4.5	4.68	4.22	4.4	0.006	1.02	0.0	0.07	9.94	0.01	1.985	12.02	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.73	0.0	0.05	11.56	0.00	2.073	13.94	0.00	6.6	93.3	0.1	-1.69	1.21	0.69	0.80	—	8911	1074	14	0	32	0	0	logfile
✘	6VFi	21173	2023-02-22	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	7K9L	22754	2023-02-19	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.26	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.003	0.78	0.0	0.04	13.74	0.00	2.233	15.43	0.00	5.0	95.0	0.0	-0.40	1.05	0.68	0.77	—	10472	1372	4	0	0	0	0	logfile
✔	6VN0	21246	2023-02-23	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.73	0.0	0.09	10.70	0.01	2.270	1.75	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.4	0.003	0.74	0.0	0.05	12.66	0.00	2.144	11.00	0.19	6.3	93.3	0.3	-0.55	1.82	0.73	0.79	—	19962	2364	51	0	105	0	0	logfile
✘	7TLB	25986	2023-02-24	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22806	2916	3	0	0	0	0	logfile
✘	7K9X	22755	2023-02-19	2020-09-29	3.8	3.44	—	3.7	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.79	0.81	0.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10472	1372	4	0	0	0	0	logfile
✔	7M68	23690	2023-02-24	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.49	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✘	7KSR	23024	2023-02-20	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11863	1524	5	0	7	0	0	logfile
✔	6CNo	7539	2023-02-21	2018-03-08	4.7	4.91	—	4.8	0.006	1.03	0.0	0.05	9.24	0.01	1.936	5.57	0.26	3.5	96.5	0.0	-2.70	0.64	0.79	—	4.8	0.033	0.98	0.0	0.05	13.13	0.01	1.609	36.78	0.00	3.0	97.0	0.0	0.18	1.30	0.64	0.79	—	15428	2024	12	0	12	0	0	logfile
✔	7YQ6	34021	2023-02-21	2022-08-05	4.18	4.67	4.33	4.4	0.019	1.34	0.0	0.06	17.92	0.03	2.222	7.46	0.35	8.5	91.5	0.0	-3.94	0.84	0.79	—	4.4	0.003	1.02	0.0	0.05	17.60	0.01	2.190	13.89	0.00	9.5	90.5	0.0	-2.49	0.66	0.84	0.79	—	13990	1592	4	48	0	0	0	logfile
✔	6VLR	21232	2023-02-24	2020-01-24	4.42	4.62	4.43	4.4	0.021	1.74	0.0	0.10	10.31	0.01	2.046	1.26	0.13	2.6	97.2	0.2	1.05	0.72	0.80	—	4.4	0.003	0.66	0.0	0.04	12.21	0.00	2.121	11.56	0.00	4.1	95.8	0.1	0.72	2.72	0.72	0.83	—	21768	2611	37	0	92	0	0	logfile
✔	7SK5	25173	2023-02-21	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.93	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.002	0.54	0.0	0.04	15.66	0.00	1.979	10.91	0.63	4.9	95.1	0.0	-0.06	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	6RiB	4887	2023-02-22	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.010	1.18	0.0	0.06	14.53	0.01	2.111	35.36	0.00	25.6	74.4	0.0	-5.41	1.66	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	7B1B	11982	2023-02-20	2020-11-24	4.23	6.70	4.32	4.1	0.004	0.70	0.0	0.04	14.15	0.01	2.087	33.07	0.54	13.6	86.4	0.0	-2.84	0.88	0.83	—	4.2	0.003	0.65	0.0	0.04	12.10	0.00	2.135	18.29	0.00	10.0	90.0	0.0	-2.68	0.93	0.88	0.82	—	12870	1697	12	0	22	0	0	logfile
✔	6CP7	7549	2023-02-19	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.004	0.93	0.0	0.04	12.55	0.00	2.175	18.15	0.00	5.3	94.7	0.0	-0.79	1.03	0.51	0.70	—	9164	1234	16	0	0	0	0	logfile

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