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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HC7 | 34654 | 2024-03-11 | 2022-11-01 | 4.54 | 4.75 | 4.46 | 4.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.29 | 0.00 | 2.255 | 5.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.52 | 0.77 | 0.68 | — | 4.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.10 | 0.00 | 2.126 | 14.82 | 0.13 | 7.5 | 92.5 | 0.0 | -1.38 | 1.75 | 0.80 | 0.76 | — | 7373 | 919 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6Q0X | 20555 | 2024-03-15 | 2019-08-02 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.88 | 0.0 | 0.05 | 17.07 | 0.00 | 2.139 | 24.04 | 1.21 | 8.1 | 91.9 | 0.0 | -3.83 | 0.68 | 0.72 | — | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 16.07 | 0.00 | 2.160 | 18.57 | 0.00 | 6.7 | 93.3 | 0.0 | 0.10 | 1.38 | 0.67 | 0.72 | — | 12468 | 1492 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMQ | 4076 | 2024-03-11 | 2016-08-01 | 4.2 | 4.46 | 4.25 | 4.2 | 0.009 | 1.44 | 30.0 | 0.12 | 26.70 | 0.02 | 1.387 | 19.43 | 21.46 | 10.5 | 86.1 | 3.4 | -2.56 | 0.80 | 0.76 | — | 4.2 | 0.006 | 0.81 | 0.0 | 0.04 | 24.11 | 0.01 | 1.784 | 33.52 | 0.09 | 9.0 | 90.5 | 0.5 | -1.45 | 1.62 | 0.84 | 0.85 | — | 55841 | 2635 | 29 | 1612 | 66 | 0 | 0 | logfile |
✘ | 7XJ3 | 33218 | 2024-03-17 | 2022-04-14 | 3.54 | 3.75 | 3.55 | 3.7 | 0.019 | 1.03 | 0.0 | 0.04 | 16.43 | 0.01 | 2.242 | 12.56 | 6.79 | 8.8 | 91.2 | 0.0 | -3.52 | 0.69 | 0.84 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18493 | 2428 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6WHG | 21672 | 2024-03-17 | 2020-04-08 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17116 | 2092 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7XD6 | 33137 | 2024-03-14 | 2022-03-26 | 2.84 | 3.25 | 2.83 | 3.0 | 0.005 | 0.74 | 0.0 | 0.04 | 23.79 | 0.00 | 1.975 | 1.30 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.86 | — | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 23.96 | 0.00 | 1.878 | 7.75 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.32 | 0.88 | 0.89 | — | 9843 | 0 | 3 | 459 | 29 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2024-03-17 | 2021-05-05 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✔ | 6WHT | 21675 | 2024-03-18 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 14.47 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 12.10 | 0.00 | 2.039 | 13.24 | 0.06 | 10.9 | 89.1 | 0.0 | -1.46 | 0.49 | 0.75 | 0.80 | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 7TJX | 25939 | 2024-03-18 | 2022-01-17 | 4.0 | 3.84 | 4.09 | 3.9 | 0.003 | 0.62 | 0.0 | 0.05 | 12.05 | 0.00 | 1.858 | 2.49 | 0.05 | 1.8 | 98.2 | 0.0 | 0.09 | 0.60 | 0.79 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.74 | 0.00 | 1.899 | 10.37 | 3.59 | 2.6 | 97.4 | 0.0 | 0.37 | 1.47 | 0.62 | 0.80 | — | 21663 | 3072 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 6WHV | 21677 | 2024-03-19 | 2020-04-08 | 4.05 | 4.56 | — | 4.4 | 0.008 | 0.85 | 0.0 | 0.09 | 14.93 | 0.01 | 2.076 | 19.81 | 0.33 | 17.3 | 82.6 | 0.1 | -5.39 | 0.69 | 0.78 | — | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.94 | 0.00 | 2.115 | 10.29 | 0.00 | 7.8 | 92.2 | 0.0 | -2.29 | 0.58 | 0.69 | 0.78 | — | 23764 | 3170 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 6NR4 | 0489 | 2024-03-19 | 2019-01-22 | 4.3 | 4.39 | 4.24 | 4.3 | 0.006 | 0.93 | 0.0 | 0.05 | 9.96 | 0.01 | 2.319 | 3.34 | 0.39 | 4.7 | 95.3 | 0.0 | -3.24 | 0.60 | 0.77 | — | 4.3 | 0.004 | 0.66 | 0.0 | 0.04 | 12.14 | 0.00 | 2.243 | 9.30 | 0.00 | 4.7 | 95.3 | 0.0 | 1.65 | 0.76 | 0.60 | 0.79 | — | 23264 | 3036 | 4 | 0 | 180 | 0 | 0 | logfile |
✔ | 7TJW | 25934 | 2024-03-19 | 2022-01-17 | 4.0 | 3.71 | 4.05 | 3.8 | 0.003 | 0.64 | 0.0 | 0.05 | 13.06 | 0.00 | 1.855 | 2.42 | 0.00 | 2.2 | 97.8 | 0.0 | 0.19 | 0.61 | 0.79 | — | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.04 | 0.00 | 1.878 | 9.24 | 3.75 | 3.3 | 96.7 | 0.0 | 0.67 | 0.62 | 0.62 | 0.80 | — | 22500 | 3097 | 12 | 0 | 10 | 0 | 0 | logfile |
✔ | 6WHW | 21678 | 2024-03-19 | 2020-04-08 | 4.09 | 3.98 | — | 3.9 | 0.009 | 0.86 | 0.0 | 0.05 | 14.47 | 0.01 | 2.086 | 15.47 | 0.74 | 14.8 | 85.0 | 0.2 | -5.22 | 0.71 | 0.77 | — | 3.9 | 0.002 | 0.60 | 0.0 | 0.04 | 13.58 | 0.00 | 2.165 | 8.20 | 0.00 | 6.2 | 93.8 | 0.0 | -1.36 | 0.53 | 0.72 | 0.78 | — | 23640 | 3160 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7W77 | 32341 | 2024-03-15 | 2021-12-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12051 | 1424 | 7 | 0 | 30 | 0 | 0 | logfile |
✔ | 5oFo | 3776 | 2024-03-22 | 2017-07-11 | 4.6 | 4.87 | 4.51 | 4.6 | 0.009 | 1.24 | 0.0 | 0.06 | 12.78 | 0.01 | 2.219 | 14.12 | 0.92 | 5.4 | 94.4 | 0.2 | -3.79 | 0.70 | 0.58 | — | 4.6 | 0.003 | 0.71 | 0.0 | 0.04 | 13.42 | 0.00 | 2.096 | 19.70 | 0.00 | 4.1 | 95.9 | 0.0 | -0.13 | 3.20 | 0.85 | 0.83 | — | 32993 | 4116 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2024-03-19 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 17.34 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 8DW2 | 27749 | 2024-03-14 | 2022-07-30 | 4.11 | 4.56 | 4.33 | 4.3 | 0.003 | 0.81 | 0.0 | 0.05 | 17.65 | 0.01 | 2.127 | 18.20 | 0.48 | 6.2 | 93.7 | 0.1 | -0.94 | 0.76 | 0.78 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 14.06 | 0.01 | 2.132 | 16.25 | 0.00 | 7.6 | 92.3 | 0.1 | -0.77 | 1.03 | 0.77 | 0.80 | — | 9364 | 1223 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7ZNN | 14812 | 2024-03-16 | 2022-04-21 | 4.8 | 7.93 | 6.02 | 4.7 | 0.003 | 0.80 | 0.0 | 0.04 | 14.16 | 0.00 | 2.316 | 6.53 | 0.93 | 7.2 | 92.6 | 0.2 | -4.19 | 0.87 | 0.70 | — | 4.7 | 0.003 | 0.70 | 0.0 | 0.04 | 13.34 | 0.00 | 2.120 | 24.30 | 0.00 | 5.1 | 94.9 | 0.1 | -1.32 | 2.02 | 0.88 | 0.71 | — | 14606 | 1814 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UT7 | 20868 | 2024-03-25 | 2019-10-29 | 4.26 | 4.38 | 4.21 | 4.3 | 0.005 | 0.84 | 0.0 | 0.06 | 14.74 | 0.01 | 2.117 | 5.40 | 0.44 | 5.8 | 94.2 | 0.0 | -5.22 | 0.74 | 0.68 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.85 | 0.00 | 1.957 | 12.53 | 0.00 | 5.5 | 94.5 | 0.0 | -0.35 | 1.58 | 0.81 | 0.80 | — | 45062 | 5522 | 26 | 4 | 20 | 0 | 0 | logfile |
✔ | 5V8M | 8644 | 2024-03-18 | 2017-03-22 | 4.4 | 4.52 | — | 4.3 | 0.015 | 1.86 | 0.0 | 0.11 | 15.33 | 0.01 | 2.124 | 5.99 | 0.14 | 2.4 | 97.6 | 0.0 | 2.25 | 0.75 | 0.75 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 11.32 | 0.00 | 2.107 | 9.91 | 0.05 | 4.0 | 96.0 | 0.0 | 0.99 | 0.79 | 0.77 | 0.80 | — | 20835 | 2376 | 57 | 0 | 153 | 0 | 0 | logfile |