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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SiA | 40504 | 2024-03-17 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.24 | 0.0 | 0.09 | 19.00 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✘ | 8FC8 | 28976 | 2024-03-24 | 2022-12-01 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39152 | 2468 | 8 | 0 | 8 | 0 | 19384 | logfile |
✔ | 8SAL | 40273 | 2024-03-17 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 4.9 | 0.006 | 0.97 | 0.0 | 0.05 | 13.56 | 0.01 | 1.992 | 37.35 | 0.00 | 11.1 | 88.7 | 0.2 | -2.29 | 2.71 | 0.80 | 0.79 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z8V | 14564 | 2024-03-17 | 2022-03-18 | 2.7 | 2.20 | 2.73 | 1.9 | 0.003 | 0.51 | 0.0 | 0.04 | 13.97 | 0.00 | 1.989 | 4.21 | 0.00 | 1.7 | 98.3 | 0.0 | 1.51 | 0.80 | 0.81 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18313 | 2417 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 8iH5 | 35440 | 2024-03-13 | 2023-02-22 | 4.0 | 4.01 | 3.99 | 4.0 | 0.004 | 1.13 | 2.0 | 0.04 | 14.76 | 0.00 | 1.496 | 7.36 | 0.34 | 3.9 | 96.1 | 0.0 | -2.34 | 0.77 | 0.82 | — | 4.0 | 0.002 | 0.91 | 0.0 | 0.04 | 16.20 | 0.00 | 2.196 | 7.18 | 1.65 | 3.4 | 96.6 | 0.0 | 0.52 | 0.38 | 0.78 | 0.85 | — | 33126 | 4119 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8oMo | 16973 | 2024-03-15 | 2023-03-31 | 3.43 | 2.51 | 3.47 | 3.2 | 0.007 | 1.36 | 2.0 | 0.09 | 17.68 | 0.00 | 1.488 | 21.48 | 4.68 | 8.0 | 92.0 | 0.0 | -3.82 | 0.75 | 0.80 | 1.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10290 | 1288 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GP5 | 34190 | 2024-03-10 | 2022-08-25 | 4.05 | 4.31 | 3.42 | 4.2 | 0.005 | 0.80 | 0.0 | 0.06 | 16.71 | 0.00 | 2.199 | 12.31 | 0.18 | 5.4 | 94.6 | 0.0 | -1.09 | 0.61 | 0.79 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 13.75 | 0.00 | 2.221 | 12.59 | 0.18 | 5.8 | 94.2 | 0.0 | -1.04 | 1.14 | 0.60 | 0.79 | — | 5470 | 646 | 11 | 0 | 26 | 0 | 0 | logfile |
✔ | 8C96 | 16503 | 2024-03-24 | 2023-01-21 | 4.43 | 5.03 | 4.86 | 4.4 | 0.001 | 0.36 | 0.0 | 0.03 | 22.54 | 0.00 | 1.928 | 6.57 | 0.08 | 3.8 | 96.1 | 0.1 | 0.57 | 0.83 | 0.79 | — | 4.4 | 0.006 | 0.74 | 0.0 | 0.04 | 24.03 | 0.01 | 1.999 | 39.58 | 0.00 | 8.3 | 91.7 | 0.0 | -1.84 | 0.94 | 0.84 | 0.85 | — | 44214 | 1607 | 16 | 1475 | 0 | 0 | 0 | logfile |
✔ | 8FZQ | 29637 | 2024-03-14 | 2023-01-29 | 4.3 | 3.97 | 4.18 | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.43 | 0.00 | 1.999 | 8.42 | 0.10 | 2.1 | 97.9 | 0.0 | 1.00 | 0.59 | 0.69 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.67 | 0.00 | 1.912 | 9.71 | 0.00 | 2.2 | 97.8 | 0.0 | 0.64 | 2.03 | 0.63 | 0.77 | — | 9244 | 1133 | 1 | 0 | 23 | 0 | 0 | logfile |
✘ | 8AM5 | 15522 | 2024-03-22 | 2022-08-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32746 | 3194 | 29 | 0 | 146 | 0 | 0 | logfile |
✔ | 8B7Q | 15899 | 2024-03-11 | 2022-09-30 | 4.02 | 4.26 | 3.86 | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 9.87 | 0.00 | 2.234 | 4.41 | 2.94 | 3.9 | 95.6 | 0.5 | 0.29 | 0.66 | 0.80 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 12.58 | 0.00 | 2.170 | 8.68 | 0.00 | 3.9 | 96.1 | 0.0 | 1.55 | 1.23 | 0.68 | 0.82 | — | 3511 | 441 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8C95 | 16502 | 2024-03-24 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 24.56 | 0.01 | 1.894 | 49.43 | 0.00 | 10.6 | 89.4 | 0.0 | -1.86 | 1.96 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8CGi | 16644 | 2024-03-17 | 2023-02-04 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17553 | 841 | 20 | 460 | 43 | 948 | 0 | logfile |
✘ | 8DBY | 27317 | 2024-03-17 | 2022-06-15 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16794 | 1998 | 12 | 0 | 8 | 770 | 0 | logfile |
✔ | 7WLB | 32580 | 2024-03-15 | 2022-01-12 | 4.1 | 3.63 | — | 3.5 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.205 | 6.88 | 3.92 | 4.5 | 95.5 | 0.0 | -4.05 | 0.74 | 0.72 | — | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 11.24 | 0.00 | 2.157 | 18.00 | 0.00 | 6.4 | 93.5 | 0.1 | -0.65 | 1.45 | 0.75 | 0.75 | — | 10193 | 1327 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UoW | 26656 | 2024-03-22 | 2022-04-14 | 4.4 | 4.61 | 4.40 | 4.4 | 0.003 | 0.64 | 0.0 | 0.05 | 13.68 | 0.00 | 2.097 | 14.31 | 0.14 | 4.5 | 95.3 | 0.1 | -1.07 | 0.70 | 0.57 | — | 4.4 | 0.005 | 0.74 | 0.0 | 0.05 | 13.46 | 0.01 | 2.066 | 18.16 | 0.00 | 7.8 | 92.1 | 0.1 | -1.56 | 2.24 | 0.79 | 0.78 | — | 32566 | 4109 | 22 | 0 | 47 | 0 | 0 | logfile |
✘ | 8SXA | 40829 | 2024-03-17 | 2023-05-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18596 | 1153 | 1 | 0 | 0 | 0 | 9418 | logfile |
✘ | 8D85 | 27247 | 2024-03-11 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 19.55 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✔ | 8Goo | 34178 | 2024-03-17 | 2022-08-25 | 4.4 | 4.74 | 4.39 | 4.4 | 0.004 | 0.66 | 0.0 | 0.04 | 12.86 | 0.00 | 2.221 | 10.84 | 0.49 | 5.0 | 94.9 | 0.1 | 0.57 | 0.85 | 0.79 | — | 4.4 | 0.008 | 0.85 | 0.0 | 0.05 | 13.05 | 0.01 | 2.066 | 25.75 | 0.00 | 8.9 | 91.1 | 0.0 | -0.99 | 1.41 | 0.86 | 0.82 | — | 16966 | 2223 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YMM | 33933 | 2024-03-17 | 2022-07-28 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 136856 | 13220 | 120 | 0 | 788 | 0 | 0 | logfile |