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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RLB | 4918 | 2022-05-14 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 5.19 | 0.00 | 2.243 | 3.44 | 0.00 | 11.3 | 88.6 | 0.0 | -0.76 | 1.85 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DUZ | 8913 | 2022-05-15 | 2018-06-22 | 3.6 | 3.88 | — | 3.8 | 0.006 | 0.97 | 0.0 | 0.05 | 11.01 | 0.01 | 1.677 | 4.87 | 4.35 | 3.2 | 96.8 | 0.0 | -4.32 | 0.76 | 0.82 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72744 | 9072 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2022-05-14 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.15 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.02 | 0.0 | 0.05 | 13.71 | 0.01 | 2.118 | 26.70 | 0.00 | 14.0 | 85.0 | 1.0 | -3.83 | 4.19 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2022-05-13 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 11.61 | 0.00 | 2.100 | 15.65 | 0.01 | 3.0 | 97.0 | 0.0 | -0.13 | 1.85 | 0.80 | 0.71 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVN | 20494 | 2022-05-14 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | 4.1 | 0.003 | 0.85 | 0.0 | 0.04 | 13.93 | 0.00 | 2.237 | 10.60 | 0.00 | 12.9 | 87.0 | 0.2 | -1.95 | 1.00 | 0.69 | 0.80 | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PPK | 20441 | 2022-05-15 | 2019-07-07 | 4.4 | 4.58 | — | 4.5 | 0.008 | 1.08 | 15.0 | 0.05 | 20.24 | 0.01 | 1.150 | 22.66 | 8.03 | 11.8 | 87.5 | 0.7 | -4.28 | 0.88 | 0.83 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.03 | 18.90 | 0.01 | 2.063 | 20.99 | 0.00 | 8.3 | 91.7 | 0.0 | -1.98 | 1.60 | 0.88 | 0.83 | — | 80451 | 2684 | 24 | 2770 | 1 | 0 | 0 | logfile |
✔ | 6K0B | 9900 | 2022-05-15 | 2019-05-05 | 4.3 | 4.49 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 14.21 | 0.01 | 2.011 | 5.73 | 0.66 | 6.1 | 93.9 | 0.0 | -3.67 | 0.84 | 0.69 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.27 | 0.01 | 2.106 | 19.77 | 0.00 | 6.9 | 93.1 | 0.0 | -0.87 | 1.79 | 0.88 | 0.79 | — | 25908 | 1376 | 16 | 682 | 2 | 0 | 0 | logfile |
✔ | 6DV3 | 8914 | 2022-05-13 | 2018-06-22 | 4.1 | 4.29 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 12.83 | 0.01 | 1.837 | 8.62 | 5.67 | 5.2 | 94.8 | 0.0 | -4.68 | 0.63 | 0.69 | — | 4.3 | 0.006 | 0.78 | 0.0 | 0.05 | 12.73 | 0.01 | 2.028 | 11.40 | 0.03 | 4.0 | 96.0 | 0.0 | -1.67 | 0.84 | 0.66 | 0.83 | — | 57975 | 7500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2022-05-13 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 21.88 | 0.01 | 2.197 | 7.21 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 15.48 | 0.00 | 2.110 | 13.31 | 0.07 | 9.1 | 90.6 | 0.3 | -1.26 | 2.83 | 0.63 | 0.76 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2022-05-14 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.08 | 0.0 | 0.05 | 12.05 | 0.00 | 2.014 | 16.53 | 0.00 | 15.9 | 84.0 | 0.1 | -3.20 | 1.52 | 0.67 | 0.75 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2022-05-17 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.03 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DVW | 8919 | 2022-05-14 | 2018-06-25 | 4.3 | 4.35 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 11.88 | 0.01 | 1.840 | 5.62 | 0.87 | 15.9 | 83.7 | 0.4 | -5.79 | 0.68 | 0.80 | — | 4.3 | 0.006 | 0.93 | 0.0 | 0.04 | 13.19 | 0.01 | 1.984 | 12.64 | 0.04 | 13.9 | 85.9 | 0.2 | -2.28 | 0.82 | 0.67 | 0.79 | — | 21004 | 2576 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJZ | 0012 | 2022-05-13 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 10.30 | 0.01 | 2.008 | 14.06 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 11.90 | 0.00 | 2.023 | 28.55 | 0.00 | 11.3 | 88.7 | 0.0 | -0.73 | 1.51 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6PWW | 20513 | 2022-05-16 | 2019-07-23 | 4.4 | 5.49 | — | 4.5 | 0.004 | 0.62 | 0.0 | 0.04 | 25.75 | 0.00 | 1.996 | 22.00 | 1.22 | 4.5 | 95.5 | 0.0 | -2.62 | 0.92 | 0.84 | — | 4.5 | 0.005 | 0.70 | 0.0 | 0.04 | 25.29 | 0.00 | 2.056 | 28.12 | 0.00 | 5.6 | 94.4 | 0.0 | -1.14 | 0.68 | 0.92 | 0.85 | — | 18174 | 1550 | 14 | 292 | 1 | 0 | 0 | logfile |
✔ | 6F41 | 4181 | 2022-05-18 | 2017-11-29 | 4.3 | 4.42 | — | 4.3 | 0.002 | 0.64 | 0.0 | 0.04 | 15.14 | 0.01 | 2.195 | 7.66 | 0.80 | 9.9 | 90.1 | 0.1 | -4.92 | 0.82 | 0.78 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.04 | 15.47 | 0.00 | 2.024 | 12.51 | 0.02 | 8.4 | 91.6 | 0.0 | -2.23 | 1.55 | 0.84 | 0.81 | — | 47788 | 5667 | 29 | 132 | 7 | 0 | 0 | logfile |
✔ | 6i52 | 4410 | 2022-05-12 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.25 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | 8.7 | 0.003 | 0.82 | 0.0 | 0.05 | 18.33 | 0.01 | 2.108 | 21.43 | 0.00 | 10.1 | 89.2 | 0.7 | -2.91 | 3.57 | 0.76 | 0.61 | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✔ | 5VJH | 8697 | 2022-05-15 | 2017-04-19 | 4.0 | 4.05 | — | 4.0 | 0.024 | 1.94 | 0.0 | 0.10 | 11.77 | 0.01 | 1.198 | 11.38 | 0.94 | 3.8 | 95.3 | 1.0 | -0.68 | 0.72 | 0.66 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.05 | 16.96 | 0.01 | 2.107 | 19.63 | 0.61 | 6.1 | 93.6 | 0.3 | -0.43 | 2.49 | 0.77 | 0.76 | — | 27577 | 3459 | 13 | 0 | 38 | 0 | 0 | logfile |
✔ | 6MHX | 9121 | 2022-05-16 | 2018-09-18 | 4.0 | 4.20 | 3.97 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 7.56 | 0.00 | 2.077 | 6.96 | 0.30 | 3.1 | 96.9 | 0.0 | -2.52 | 0.77 | 0.76 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.03 | 12.08 | 0.00 | 1.951 | 10.47 | 0.00 | 5.2 | 94.8 | 0.0 | 2.22 | 0.98 | 0.78 | 0.78 | — | 31612 | 2436 | 4 | 0 | 0 | 0 | 14648 | logfile |
✔ | 3JCL | 6526 | 2022-05-15 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.99 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.009 | 0.95 | 1.0 | 0.05 | 14.58 | 0.01 | 2.186 | 14.20 | 0.40 | 8.3 | 91.7 | 0.0 | -0.65 | 0.98 | 0.71 | 0.72 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D00 | 7782 | 2022-05-17 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 4.03 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | 3.4 | 0.004 | 0.85 | 0.0 | 0.04 | 15.19 | 0.01 | 2.117 | 14.76 | 0.39 | 3.2 | 96.7 | 0.0 | -0.43 | 1.59 | 0.83 | 0.68 | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |