Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RLB	4918	2022-05-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✘	6DUZ	8913	2022-05-15	2018-06-22	3.6	3.88	—	3.8	0.006	0.97	0.0	0.05	11.01	0.01	1.677	4.87	4.35	3.2	96.8	0.0	-4.32	0.76	0.82	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72744	9072	48	0	0	0	0	logfile
✔	5Li4	4052	2022-05-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.70	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	6KS8	0760	2022-05-13	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.65	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	6PVN	20494	2022-05-14	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	4.1	0.003	0.85	0.0	0.04	13.93	0.00	2.237	10.60	0.00	12.9	87.0	0.2	-1.95	1.00	0.69	0.80	—	20874	2576	6	0	2	0	0	logfile
✔	6PPK	20441	2022-05-15	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	20.24	0.01	1.150	22.66	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.003	0.65	0.0	0.03	18.90	0.01	2.063	20.99	0.00	8.3	91.7	0.0	-1.98	1.60	0.88	0.83	—	80451	2684	24	2770	1	0	0	logfile
✔	6K0B	9900	2022-05-15	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.106	19.77	0.00	6.9	93.1	0.0	-0.87	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	6DV3	8914	2022-05-13	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.006	0.78	0.0	0.05	12.73	0.01	2.028	11.40	0.03	4.0	96.0	0.0	-1.67	0.84	0.66	0.83	—	57975	7500	15	0	0	0	0	logfile
✔	5AEY	2850	2022-05-13	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.21	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.76	0.0	0.04	15.48	0.00	2.110	13.31	0.07	9.1	90.6	0.3	-1.26	2.83	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	5WRG	6679	2022-05-14	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.08	0.0	0.05	12.05	0.00	2.014	16.53	0.00	15.9	84.0	0.1	-3.20	1.52	0.67	0.75	—	16317	2208	3	0	0	0	0	logfile
✘	5NiK	3652	2022-05-17	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.03	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✔	6DVW	8919	2022-05-14	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.006	0.93	0.0	0.04	13.19	0.01	1.984	12.64	0.04	13.9	85.9	0.2	-2.28	0.82	0.67	0.79	—	21004	2576	4	0	0	0	0	logfile
✔	6GJZ	0012	2022-05-13	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	10.30	0.01	2.008	14.06	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.003	0.76	0.0	0.04	11.90	0.00	2.023	28.55	0.00	11.3	88.7	0.0	-0.73	1.51	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6PWW	20513	2022-05-16	2019-07-23	4.4	5.49	—	4.5	0.004	0.62	0.0	0.04	25.75	0.00	1.996	22.00	1.22	4.5	95.5	0.0	-2.62	0.92	0.84	—	4.5	0.005	0.70	0.0	0.04	25.29	0.00	2.056	28.12	0.00	5.6	94.4	0.0	-1.14	0.68	0.92	0.85	—	18174	1550	14	292	1	0	0	logfile
✔	6F41	4181	2022-05-18	2017-11-29	4.3	4.42	—	4.3	0.002	0.64	0.0	0.04	15.14	0.01	2.195	7.66	0.80	9.9	90.1	0.1	-4.92	0.82	0.78	—	4.3	0.003	0.75	0.0	0.04	15.47	0.00	2.024	12.51	0.02	8.4	91.6	0.0	-2.23	1.55	0.84	0.81	—	47788	5667	29	132	7	0	0	logfile
✔	6i52	4410	2022-05-12	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.25	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.82	0.0	0.05	18.33	0.01	2.108	21.43	0.00	10.1	89.2	0.7	-2.91	3.57	0.76	0.61	—	3856	432	4	20	0	0	0	logfile
✔	5VJH	8697	2022-05-15	2017-04-19	4.0	4.05	—	4.0	0.024	1.94	0.0	0.10	11.77	0.01	1.198	11.38	0.94	3.8	95.3	1.0	-0.68	0.72	0.66	—	4.0	0.004	0.83	0.0	0.05	16.96	0.01	2.107	19.63	0.61	6.1	93.6	0.3	-0.43	2.49	0.77	0.76	—	27577	3459	13	0	38	0	0	logfile
✔	6MHX	9121	2022-05-16	2018-09-18	4.0	4.20	3.97	4.1	0.004	0.67	0.0	0.04	7.56	0.00	2.077	6.96	0.30	3.1	96.9	0.0	-2.52	0.77	0.76	—	4.0	0.003	0.54	0.0	0.03	12.08	0.00	1.951	10.47	0.00	5.2	94.8	0.0	2.22	0.98	0.78	0.78	—	31612	2436	4	0	0	0	14648	logfile
✔	3JCL	6526	2022-05-15	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.99	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.009	0.95	1.0	0.05	14.58	0.01	2.186	14.20	0.40	8.3	91.7	0.0	-0.65	0.98	0.71	0.72	—	24822	3201	3	0	0	0	0	logfile
✔	6D00	7782	2022-05-17	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.4	0.004	0.85	0.0	0.04	15.19	0.01	2.117	14.76	0.39	3.2	96.7	0.0	-0.43	1.59	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile

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