Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V86	21096	2023-04-24	2019-12-10	4.63	4.30	—	4.1	0.004	0.83	0.0	0.04	14.79	0.01	1.470	23.47	0.70	13.1	86.6	0.2	-4.51	0.80	0.73	—	4.1	0.003	0.79	0.0	0.04	14.55	0.00	2.025	17.65	0.35	11.9	88.1	0.0	-1.22	0.69	0.81	0.73	—	17781	2229	7	0	2	0	0	logfile
✔	6RAN	4781	2023-04-21	2019-04-06	4.2	4.30	4.23	4.2	0.017	2.08	19.0	0.14	12.46	0.01	2.319	10.03	0.09	3.7	96.3	0.1	0.16	0.78	0.71	—	4.2	0.003	0.66	0.0	0.04	14.04	0.00	2.186	9.84	0.00	2.4	97.6	0.0	1.68	2.60	0.79	0.73	—	10173	1287	3	0	0	0	0	logfile
✘	6XKT	22224	2023-04-22	2020-06-27	3.75	3.88	—	3.8	0.009	0.99	1.0	0.07	13.78	0.01	1.732	26.25	0.08	16.5	83.1	0.4	-4.20	0.75	0.79	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13079	1678	12	0	8	0	0	logfile
✔	6EZo	4162	2023-04-24	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	7K8D	22728	2023-04-21	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	3J03	5138	2023-04-21	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.8	0.003	0.82	0.0	0.04	14.05	0.01	2.286	21.54	0.00	3.1	96.9	0.0	-0.66	1.46	0.82	0.68	—	58640	7856	16	0	0	0	0	logfile
✔	5G2Y	3332	2023-04-22	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6D7T	7825	2023-04-25	2018-04-25	4.44	4.50	—	4.4	0.010	1.49	0.0	0.07	14.79	0.01	1.997	11.74	5.48	10.7	88.8	0.5	-5.38	0.73	0.82	—	4.4	0.004	0.91	0.0	0.05	13.34	0.00	2.136	19.78	0.00	9.4	90.6	0.0	-1.80	0.81	0.73	0.81	—	19654	2444	8	0	6	0	0	logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	5V4S	8632	2023-04-21	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.003	0.56	0.0	0.04	12.67	0.00	2.165	4.59	0.00	2.4	97.6	0.0	3.09	1.04	0.57	0.72	—	10756	1548	4	0	0	0	0	logfile
✔	6C5V	7344	2023-04-21	2018-01-16	4.8	4.87	—	4.8	0.013	1.30	0.0	0.07	9.99	0.01	2.307	0.95	0.43	2.4	97.3	0.3	0.06	0.83	0.78	—	4.8	0.004	0.71	0.0	0.04	12.63	0.00	2.042	13.75	0.00	3.9	96.1	0.0	0.23	0.94	0.84	0.81	—	10649	1353	9	0	14	0	0	logfile
✔	6RAG	4774	2023-04-21	2019-04-06	4.2	4.40	4.22	4.2	0.010	1.42	5.0	0.08	15.36	0.01	1.911	10.72	0.67	4.2	95.8	0.0	-3.67	0.84	0.81	—	4.2	0.003	0.68	0.0	0.04	14.16	0.00	1.993	11.64	0.00	2.7	97.3	0.0	1.08	1.76	0.84	0.79	—	10188	1282	5	0	4	0	0	logfile
✔	8EXS	28661	2023-04-21	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.66	0.0	0.04	12.86	0.00	2.054	16.08	0.00	4.7	95.3	0.0	0.31	2.12	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	5MKE	3523	2023-04-24	2016-12-04	4.3	4.44	—	4.3	0.010	1.25	8.0	0.07	13.69	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.004	0.87	0.0	0.05	14.65	0.00	2.069	25.59	0.00	10.1	89.9	0.0	-3.16	0.91	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✔	6J5A	0670	2023-04-20	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	12.84	0.00	2.192	10.27	0.00	8.6	91.4	0.0	-1.31	1.18	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✘	7P2P	13171	2023-04-20	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	11.29	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4783	587	5	0	5	0	0	logfile
✔	6HE5	0210	2023-04-27	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.88	0.0	0.05	14.49	0.00	2.074	22.24	0.00	4.4	95.4	0.2	-0.85	1.76	0.58	0.76	—	24633	3162	20	0	0	0	0	logfile
✔	6QD2	4517	2023-04-26	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	6V69	21060	2023-04-20	2019-12-04	4.2	4.28	—	4.2	0.003	0.51	0.0	0.04	13.16	0.00	2.204	6.51	0.22	3.5	96.5	0.0	-4.11	0.55	0.83	—	4.2	0.003	0.65	0.0	0.04	13.50	0.00	2.188	7.71	0.11	3.4	96.6	0.0	0.56	1.46	0.56	0.83	—	8353	1027	2	0	0	0	0	logfile
✔	5VAi	8653	2023-04-21	2017-03-27	4.1	4.62	—	4.6	0.008	1.11	0.0	0.05	9.72	0.01	2.049	31.73	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.83	0.0	0.05	12.89	0.00	2.115	21.59	0.00	4.7	95.2	0.2	-0.83	1.50	0.70	0.71	—	9099	1178	6	0	0	0	0	logfile

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