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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NiU | 12365 | 2024-03-16 | 2021-02-14 | 4.2 | 3.68 | — | 3.5 | 0.008 | 1.01 | 0.0 | 0.05 | 16.08 | 0.01 | 2.110 | 34.12 | 1.67 | 14.7 | 85.0 | 0.2 | -5.18 | 0.57 | 0.58 | — | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.55 | 0.00 | 2.136 | 13.82 | 0.12 | 6.3 | 93.7 | 0.0 | -1.75 | 2.21 | 0.56 | 0.56 | — | 15495 | 2015 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2024-03-10 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o90 | 0660 | 2024-03-18 | 2019-03-12 | 3.49 | 3.96 | — | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 22.76 | 0.01 | 2.125 | 5.34 | 0.46 | 13.8 | 85.9 | 0.3 | -4.68 | 0.86 | 0.82 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138532 | 5232 | 53 | 4547 | 4 | 0 | 0 | logfile |
✔ | 7NVW | 12615 | 2024-03-19 | 2021-03-16 | 4.3 | 4.32 | 4.26 | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 15.51 | 0.00 | 1.971 | 6.64 | 0.00 | 4.4 | 95.6 | 0.0 | 0.80 | 0.71 | 0.66 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.04 | 15.86 | 0.00 | 2.083 | 16.29 | 0.00 | 5.0 | 94.9 | 0.0 | -0.73 | 1.06 | 0.73 | 0.69 | — | 23647 | 2814 | 17 | 42 | 35 | 0 | 0 | logfile |
✘ | 7YS6 | 34073 | 2024-03-11 | 2022-08-11 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8794 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y7K | 33668 | 2024-03-10 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 11.35 | 0.00 | 2.166 | 15.16 | 0.35 | 7.5 | 92.3 | 0.2 | -1.11 | 1.42 | 0.73 | 0.68 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XHi | 22186 | 2024-03-11 | 2020-06-18 | 4.19 | 4.70 | — | 4.5 | 0.013 | 1.51 | 0.0 | 0.08 | 14.97 | 0.01 | 2.283 | 2.42 | 0.00 | 2.6 | 97.4 | 0.0 | -1.57 | 0.85 | 0.81 | — | 4.5 | 0.002 | 0.67 | 0.0 | 0.04 | 13.42 | 0.00 | 2.162 | 8.08 | 0.00 | 2.2 | 97.8 | 0.0 | 1.47 | 1.66 | 0.84 | 0.80 | — | 58554 | 8514 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 6FTi | 4316 | 2024-03-02 | 2018-02-22 | 4.2 | 4.31 | — | 4.2 | 0.011 | 1.38 | 18.0 | 0.10 | 25.55 | 0.01 | 0.284 | 12.03 | 11.77 | 9.7 | 87.9 | 2.4 | -4.07 | 0.61 | 0.61 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 24.07 | 0.01 | 1.148 | 24.17 | 0.06 | 8.2 | 91.2 | 0.5 | -1.60 | 1.00 | 0.63 | 0.66 | — | 153850 | 8349 | 76 | 4014 | 399 | 0 | 0 | logfile |
✘ | 8JLR | 36405 | 2024-03-11 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8934 | 1130 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DZQ | 27805 | 2024-03-11 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2024-03-11 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✔ | 7NG4 | 12307 | 2024-03-16 | 2021-02-08 | 4.4 | 5.07 | 4.36 | 3.9 | 0.010 | 1.37 | 0.0 | 0.06 | 13.48 | 0.01 | 1.977 | 6.38 | 0.12 | 7.3 | 92.7 | 0.0 | -2.19 | 0.89 | 0.78 | — | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 12.98 | 0.00 | 1.735 | 13.20 | 0.00 | 5.3 | 94.7 | 0.0 | -1.11 | 0.96 | 0.88 | 0.80 | — | 74624 | 4656 | 13 | 0 | 31 | 0 | 37485 | logfile |
✘ | 7M3N | 23658 | 2024-03-10 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2024-03-19 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.005 | 0.80 | 0.0 | 0.06 | 11.19 | 0.01 | 2.249 | 3.71 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 12.29 | 0.00 | 1.764 | 11.04 | 1.02 | 2.9 | 97.1 | 0.0 | 0.62 | 1.23 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✘ | 8ESA | 28573 | 2024-03-10 | 2022-10-13 | 3.4 | 3.68 | 3.37 | 3.6 | 0.004 | 0.49 | 0.0 | 0.04 | 14.83 | 0.00 | 2.243 | 5.75 | 0.30 | 4.0 | 96.0 | 0.0 | -0.99 | 0.65 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3140 | 384 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RU5 | 24697 | 2024-03-20 | 2021-08-16 | 3.6 | 4.35 | 3.76 | 3.7 | 0.020 | 1.82 | 0.0 | 0.12 | 10.14 | 0.01 | 2.413 | 0.95 | 0.06 | 2.9 | 97.1 | 0.0 | 0.47 | 0.84 | 0.72 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28673 | 3611 | 20 | 0 | 40 | 0 | 0 | logfile |
✘ | 8CYi | 27078 | 2024-03-16 | 2022-05-23 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14621 | 932 | 3 | 0 | 2 | 0 | 7191 | logfile |
✔ | 6GJ3 | 0010 | 2024-03-17 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 12.15 | 0.01 | 2.272 | 9.39 | 0.00 | 9.3 | 90.7 | 0.0 | -1.52 | 0.73 | 0.71 | 0.77 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2024-03-18 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 14.90 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2024-03-11 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |