Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UZ2	20950	2023-08-10	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	31.10	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	12.08	0.00	2.189	14.57	0.00	5.1	94.8	0.1	0.03	0.97	0.67	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	6D83	7453	2023-08-14	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.11	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.003	0.75	0.0	0.05	13.93	0.00	1.983	16.08	0.05	4.2	95.8	0.0	-0.81	1.07	0.81	0.77	—	16588	2063	10	0	4	0	0	logfile
✔	8HC3	34650	2023-08-21	2022-11-01	4.35	4.29	4.25	3.9	0.003	0.59	0.0	0.05	13.27	0.00	2.206	5.53	0.00	3.5	96.5	0.0	-0.31	0.81	0.74	—	3.9	0.003	0.60	0.0	0.04	13.22	0.00	2.113	12.46	0.00	3.7	96.3	0.0	-0.34	1.77	0.82	0.79	—	31497	3954	22	0	54	0	0	logfile
✔	6oRQ	20178	2023-08-16	2019-04-30	4.4	4.71	4.38	4.5	0.008	1.31	0.0	0.08	12.61	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.003	0.89	0.0	0.05	12.93	0.00	2.145	16.63	0.24	16.0	83.9	0.1	-3.57	1.60	0.65	0.83	—	20176	2430	40	0	83	0	0	logfile
✔	7EZ2	31386	2023-08-10	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.92	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.008	0.86	0.0	0.05	15.75	0.01	1.755	7.20	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	8i6R	35204	2023-08-10	2023-01-29	4.0	5.22	4.04	4.2	0.006	1.03	0.0	0.04	14.89	0.00	1.797	22.17	1.66	6.8	93.1	0.1	-0.44	0.75	0.84	—	4.2	0.004	0.78	0.0	0.04	16.64	0.00	1.890	19.36	2.14	6.7	93.2	0.1	0.06	0.43	0.75	0.85	—	7757	1011	6	0	3	0	0	logfile
✔	7MoC	23924	2023-08-13	2021-05-01	4.56	3.76	4.47	3.7	0.012	1.82	17.0	0.11	13.17	0.02	2.211	1.99	0.19	1.7	98.3	0.0	-0.04	0.58	0.68	—	3.7	0.004	0.78	0.0	0.04	14.36	0.00	2.016	20.76	0.00	2.9	97.1	0.0	1.71	1.63	0.58	0.70	—	13883	1755	2	0	0	0	0	logfile
✘	7DoK	30795	2023-08-12	2020-12-14	2.73	2.84	—	2.9	0.009	1.01	0.0	0.07	13.35	0.01	1.695	5.72	0.60	2.4	97.6	0.0	-2.40	0.71	0.85	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11534	1323	8	44	9	2	0	logfile
✘	6VAF	21139	2023-08-20	2019-12-17	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41243	2429	5	58	0	0	20677	logfile
✔	6SH5	10194	2023-08-12	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.82	0.0	0.04	5.28	0.00	2.265	5.49	0.00	16.4	83.6	0.0	-2.90	1.64	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✘	6oo7	20148	2023-08-14	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.27	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	6BBM	7076	2023-08-18	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23956	2662	15	0	623	0	0	logfile
✔	6ZNN	11318	2023-08-15	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.74	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.72	0.0	0.04	12.89	0.00	2.134	15.08	0.00	5.1	94.8	0.1	-0.21	0.99	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile
✘	3JC7	6536	2023-08-25	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.92	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✔	6WAZ	21582	2023-08-10	2020-03-26	4.1	4.33	—	4.2	0.004	0.79	0.0	0.06	14.85	0.01	1.931	9.98	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.15	0.00	2.101	9.37	0.00	4.7	95.3	0.0	-1.28	0.73	0.83	0.83	—	8537	955	4	54	0	0	0	logfile
✘	7YJ4	33871	2023-08-11	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8985	1154	7	0	0	0	0	logfile
✔	6WB1	21584	2023-08-10	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.002	0.58	0.0	0.04	13.01	0.00	2.198	8.49	0.00	3.6	96.4	0.0	-0.61	0.69	0.87	0.83	—	8235	944	4	75	0	0	0	logfile
✔	7MoA	23922	2023-08-12	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	18.23	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.72	0.0	0.05	13.33	0.00	2.133	15.77	0.00	4.8	95.2	0.1	-1.11	0.92	0.84	0.78	—	12511	1580	5	0	12	0	0	logfile
✘	7Z5J	14522	2023-08-27	2022-03-09	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile

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