Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5YLZ	6839	2022-07-05	2017-10-20	3.6	3.71	—	3.7	0.013	1.68	60.0	0.10	15.89	0.01	1.420	22.47	4.17	11.6	86.4	2.0	-4.62	0.55	0.59	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76247	9095	49	373	14	0	0	logfile
✘	5XJC	6721	2022-07-04	2017-04-30	3.6	3.69	3.82	3.6	0.013	1.58	25.0	0.09	16.69	0.01	1.113	24.45	8.13	4.9	93.3	1.8	-1.84	0.46	0.53	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	116421	14184	59	405	24	0	0	logfile
✘	6iD0	9646	2022-07-05	2018-09-07	2.9	3.04	—	3.0	0.009	1.39	19.0	0.08	14.30	0.01	1.418	11.04	1.46	7.0	91.9	1.0	-2.86	0.63	0.68	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78004	10389	48	405	16	0	0	logfile
✘	6Q9D	4480	2022-07-05	2018-12-18	3.8	3.99	—	3.9	0.007	1.14	0.0	1.60	10.29	0.01	1.226	6.42	0.24	10.8	89.0	0.2	-4.23	0.74	0.82	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27662	3463	26	0	12	0	0	logfile
✘	5Y88	6817	2022-07-04	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.09	15.49	0.01	1.112	25.66	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile
✘	6JH6	9825	2022-07-03	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.23	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✘	6JGZ	9824	2022-07-03	2019-02-16	4.6	4.96	—	4.6	0.007	1.13	0.0	0.06	11.54	0.01	2.171	12.08	0.73	11.3	88.3	0.4	-4.06	0.78	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109824	14368	12	0	4	0	0	logfile
✘	6VRL	21370	2022-07-03	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	13.57	0.00	1.365	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✘	6iCZ	9645	2022-07-06	2018-09-07	3.0	3.12	—	3.1	0.015	1.44	14.0	0.08	13.29	0.01	1.411	8.40	1.39	5.8	93.4	0.8	-2.81	0.53	0.64	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97900	14175	58	418	19	0	0	logfile
✘	6N9V	0380	2022-07-05	2018-12-04	4.0	4.06	—	4.0	0.005	0.82	0.0	0.05	13.72	0.01	1.192	2.67	0.41	3.8	96.2	0.0	-4.08	0.76	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21526	2651	15	33	14	0	0	logfile
✘	6VRH	21368	2022-07-03	2020-02-07	3.3	3.68	3.56	3.6	0.002	0.49	0.0	0.04	12.93	0.00	1.363	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6142	764	4	0	5	0	0	logfile
✘	6iD1	9647	2022-07-05	2018-09-07	2.86	2.99	—	3.0	0.009	1.35	22.0	0.08	14.70	0.01	1.418	17.04	3.66	6.6	92.5	0.9	-2.72	0.61	0.64	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79882	10720	49	399	16	0	0	logfile
✘	5YZG	6864	2022-07-07	2017-12-14	4.1	4.23	4.20	4.1	0.016	1.80	42.0	0.10	16.13	0.01	1.129	26.81	8.31	4.8	93.5	1.7	-1.79	0.57	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103906	15211	63	408	19	0	0	logfile
✘	5Z58	6891	2022-07-06	2018-01-17	4.9	5.11	—	4.8	0.011	1.47	31.0	0.09	14.16	0.01	1.413	28.33	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile
✘	6VRK	21369	2022-07-03	2020-02-07	4.1	4.22	4.47	4.2	0.002	0.60	0.0	0.04	13.23	0.00	1.332	10.73	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✘	6PNJ	20397	2022-07-04	2019-07-02	3.19	3.33	—	3.3	0.032	3.36	0.0	0.10	20.00	0.02	1.200	8.95	0.94	6.1	93.8	0.1	-5.97	0.76	0.86	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71511	6660	60	0	420	0	0	logfile
✘	6N9W	0381	2022-07-04	2018-12-04	4.0	4.51	—	4.2	0.004	0.76	0.0	0.05	13.64	0.00	1.192	3.10	0.10	3.4	96.6	0.0	-3.98	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19576	2410	15	30	12	0	0	logfile
✘	6R4o	4721	2022-07-03	2019-03-22	4.2	4.81	—	4.6	0.006	1.19	0.0	0.06	12.54	0.01	1.169	10.23	0.48	8.2	91.8	0.0	-4.45	0.64	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9602	1182	4	0	6	0	0	logfile
✘	6RDK	4821	2022-07-02	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53748	7103	37	0	11	0	0	logfile
✘	6KiF	9994	2022-07-07	2019-07-18	3.3	3.42	—	3.3	0.010	1.30	0.0	0.06	19.33	0.01	1.357	9.08	0.03	2.9	97.1	0.0	-2.65	0.72	0.74	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144312	13395	114	0	843	54	0	logfile

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