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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5YLZ | 6839 | 2022-07-05 | 2017-10-20 | 3.6 | 3.71 | — | 3.7 | 0.013 | 1.68 | 60.0 | 0.10 | 15.89 | 0.01 | 1.420 | 22.47 | 4.17 | 11.6 | 86.4 | 2.0 | -4.62 | 0.55 | 0.59 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76247 | 9095 | 49 | 373 | 14 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2022-07-04 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.09 | 16.69 | 0.01 | 1.113 | 24.45 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 6iD0 | 9646 | 2022-07-05 | 2018-09-07 | 2.9 | 3.04 | — | 3.0 | 0.009 | 1.39 | 19.0 | 0.08 | 14.30 | 0.01 | 1.418 | 11.04 | 1.46 | 7.0 | 91.9 | 1.0 | -2.86 | 0.63 | 0.68 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78004 | 10389 | 48 | 405 | 16 | 0 | 0 | logfile |
✘ | 6Q9D | 4480 | 2022-07-05 | 2018-12-18 | 3.8 | 3.99 | — | 3.9 | 0.007 | 1.14 | 0.0 | 1.60 | 10.29 | 0.01 | 1.226 | 6.42 | 0.24 | 10.8 | 89.0 | 0.2 | -4.23 | 0.74 | 0.82 | 2.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27662 | 3463 | 26 | 0 | 12 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2022-07-04 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.09 | 15.49 | 0.01 | 1.112 | 25.66 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2022-07-03 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.23 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2022-07-03 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 12.08 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6VRL | 21370 | 2022-07-03 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 13.57 | 0.00 | 1.365 | 10.65 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6iCZ | 9645 | 2022-07-06 | 2018-09-07 | 3.0 | 3.12 | — | 3.1 | 0.015 | 1.44 | 14.0 | 0.08 | 13.29 | 0.01 | 1.411 | 8.40 | 1.39 | 5.8 | 93.4 | 0.8 | -2.81 | 0.53 | 0.64 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97900 | 14175 | 58 | 418 | 19 | 0 | 0 | logfile |
✘ | 6N9V | 0380 | 2022-07-05 | 2018-12-04 | 4.0 | 4.06 | — | 4.0 | 0.005 | 0.82 | 0.0 | 0.05 | 13.72 | 0.01 | 1.192 | 2.67 | 0.41 | 3.8 | 96.2 | 0.0 | -4.08 | 0.76 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21526 | 2651 | 15 | 33 | 14 | 0 | 0 | logfile |
✘ | 6VRH | 21368 | 2022-07-03 | 2020-02-07 | 3.3 | 3.68 | 3.56 | 3.6 | 0.002 | 0.49 | 0.0 | 0.04 | 12.93 | 0.00 | 1.363 | 9.91 | 0.00 | 5.1 | 94.9 | 0.0 | -3.01 | 0.45 | 0.70 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6142 | 764 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6iD1 | 9647 | 2022-07-05 | 2018-09-07 | 2.86 | 2.99 | — | 3.0 | 0.009 | 1.35 | 22.0 | 0.08 | 14.70 | 0.01 | 1.418 | 17.04 | 3.66 | 6.6 | 92.5 | 0.9 | -2.72 | 0.61 | 0.64 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79882 | 10720 | 49 | 399 | 16 | 0 | 0 | logfile |
✘ | 5YZG | 6864 | 2022-07-07 | 2017-12-14 | 4.1 | 4.23 | 4.20 | 4.1 | 0.016 | 1.80 | 42.0 | 0.10 | 16.13 | 0.01 | 1.129 | 26.81 | 8.31 | 4.8 | 93.5 | 1.7 | -1.79 | 0.57 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103906 | 15211 | 63 | 408 | 19 | 0 | 0 | logfile |
✘ | 5Z58 | 6891 | 2022-07-06 | 2018-01-17 | 4.9 | 5.11 | — | 4.8 | 0.011 | 1.47 | 31.0 | 0.09 | 14.16 | 0.01 | 1.413 | 28.33 | 4.95 | 6.4 | 92.4 | 1.2 | -2.65 | 0.58 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94673 | 12915 | 51 | 390 | 12 | 0 | 0 | logfile |
✘ | 6VRK | 21369 | 2022-07-03 | 2020-02-07 | 4.1 | 4.22 | 4.47 | 4.2 | 0.002 | 0.60 | 0.0 | 0.04 | 13.23 | 0.00 | 1.332 | 10.73 | 0.00 | 6.5 | 93.5 | 0.0 | -3.10 | 0.47 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6PNJ | 20397 | 2022-07-04 | 2019-07-02 | 3.19 | 3.33 | — | 3.3 | 0.032 | 3.36 | 0.0 | 0.10 | 20.00 | 0.02 | 1.200 | 8.95 | 0.94 | 6.1 | 93.8 | 0.1 | -5.97 | 0.76 | 0.86 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71511 | 6660 | 60 | 0 | 420 | 0 | 0 | logfile |
✘ | 6N9W | 0381 | 2022-07-04 | 2018-12-04 | 4.0 | 4.51 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 1.192 | 3.10 | 0.10 | 3.4 | 96.6 | 0.0 | -3.98 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19576 | 2410 | 15 | 30 | 12 | 0 | 0 | logfile |
✘ | 6R4o | 4721 | 2022-07-03 | 2019-03-22 | 4.2 | 4.81 | — | 4.6 | 0.006 | 1.19 | 0.0 | 0.06 | 12.54 | 0.01 | 1.169 | 10.23 | 0.48 | 8.2 | 91.8 | 0.0 | -4.45 | 0.64 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9602 | 1182 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6RDK | 4821 | 2022-07-02 | 2019-04-12 | 3.7 | 3.64 | — | 3.7 | 0.006 | 0.91 | 0.0 | 0.06 | 14.09 | 0.01 | 2.103 | 6.44 | 0.44 | 4.9 | 94.9 | 0.2 | -4.35 | 0.70 | 0.82 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 6KiF | 9994 | 2022-07-07 | 2019-07-18 | 3.3 | 3.42 | — | 3.3 | 0.010 | 1.30 | 0.0 | 0.06 | 19.33 | 0.01 | 1.357 | 9.08 | 0.03 | 2.9 | 97.1 | 0.0 | -2.65 | 0.72 | 0.74 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144312 | 13395 | 114 | 0 | 843 | 54 | 0 | logfile |