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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8H0Y | 34418 | 2022-12-18 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.82 | 0.0 | 0.06 | 13.16 | 0.01 | 2.274 | 2.64 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2022-12-18 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.81 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2022-12-19 | 2022-03-09 | 3.67 | 3.90 | 3.77 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 20.04 | 0.01 | 1.977 | 6.87 | 0.29 | 3.6 | 96.4 | 0.0 | 0.06 | 0.80 | 0.72 | 1.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 8E70 | 27932 | 2022-12-18 | 2022-08-23 | 4.1 | 8.52 | 6.00 | 7.4 | 0.004 | 0.69 | 0.0 | 0.05 | 14.45 | 0.00 | 1.287 | 29.26 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.64 | 0.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21097 | 2502 | 13 | 61 | 18 | 0 | 63 | logfile |
✘ | 7Z10 | 14436 | 2022-12-18 | 2022-02-24 | 3.87 | 4.12 | — | 4.0 | 0.008 | 1.14 | 0.0 | 0.05 | 16.28 | 0.02 | 1.333 | 7.11 | 9.08 | 7.5 | 92.5 | 0.0 | -3.98 | 0.58 | 0.77 | 1.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12574 | 1556 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2022-12-18 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7UY8 | 26867 | 2022-12-18 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.85 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2022-12-18 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 15.98 | 0.00 | 1.844 | 8.38 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7USF | 26737 | 2022-12-18 | 2022-04-25 | 3.5 | 4.07 | 3.62 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 19.58 | 0.00 | 2.016 | 11.09 | 0.12 | 2.5 | 97.5 | 0.0 | 0.79 | 0.60 | 0.57 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28482 | 2976 | 33 | 228 | 15 | 0 | 0 | logfile |
✘ | 7XTC | 33446 | 2022-12-18 | 2022-05-16 | 3.2 | 3.40 | 3.31 | 3.4 | 0.006 | 0.59 | 0.0 | 0.04 | 12.99 | 0.00 | 1.913 | 4.53 | 0.00 | 1.4 | 98.6 | 0.0 | 1.71 | 0.54 | 0.70 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16301 | 1038 | 5 | 0 | 2 | 0 | 8097 | logfile |
✘ | 7VY1 | 32191 | 2022-12-20 | 2021-11-13 | 3.3 | 3.60 | — | 3.6 | 0.007 | 0.82 | 0.0 | 0.04 | 17.76 | 0.00 | 2.061 | 9.23 | 0.20 | 4.4 | 95.6 | 0.0 | 1.76 | 0.77 | 0.89 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38899 | 4652 | 44 | 0 | 24 | 0 | 0 | logfile |
✘ | 7WAF | 32384 | 2022-12-18 | 2021-12-14 | 2.52 | 2.97 | 2.47 | 2.8 | 0.003 | 0.58 | 0.0 | 0.05 | 13.61 | 0.00 | 1.339 | 7.52 | 0.11 | 3.7 | 96.3 | 0.1 | 0.15 | 0.80 | 0.87 | 3.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24842 | 3226 | 16 | 0 | 20 | 0 | 0 | logfile |
✘ | 7ZUB | 14971 | 2022-12-18 | 2022-05-12 | 2.85 | 2.68 | 2.85 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 17.29 | 0.00 | 1.246 | 5.52 | 1.10 | 4.3 | 95.7 | 0.0 | 0.60 | 0.81 | 0.84 | 3.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28082 | 1722 | 7 | 0 | 7 | 0 | 14035 | logfile |
✘ | 7UZE | 26886 | 2022-12-18 | 2022-05-09 | 2.4 | 2.27 | 2.42 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.32 | 0.00 | 2.040 | 3.82 | 0.68 | 3.0 | 96.6 | 0.4 | 1.69 | 0.66 | 0.88 | 6.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14969 | 988 | 12 | 0 | 4 | 113 | 7392 | logfile |
✔ | 7PSD | 13612 | 2022-12-18 | 2021-09-22 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y1R | 33571 | 2022-12-18 | 2022-06-08 | 4.01 | 2.49 | 4.09 | 3.9 | 0.002 | 0.62 | 0.0 | 0.04 | 13.34 | 0.00 | 2.227 | 8.96 | 0.00 | 5.8 | 94.2 | 0.0 | -2.79 | 0.59 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8565 | 1041 | 11 | 0 | 20 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2022-12-18 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 18.79 | 0.00 | 1.962 | 11.61 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2022-12-18 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.21 | 0.00 | 1.956 | 17.43 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 8D9M | 27266 | 2022-12-18 | 2022-06-10 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18248 | 2064 | 8 | 0 | 64 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2022-12-18 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.58 | 0.0 | 0.05 | 11.19 | 0.01 | 2.200 | 9.38 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |