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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6M5U | 30093 | 2024-03-15 | 2020-03-11 | 3.8 | 3.78 | — | 3.8 | 0.007 | 0.86 | 1.0 | 0.05 | 16.07 | 0.00 | 2.210 | 18.52 | 5.59 | 9.0 | 90.8 | 0.2 | -3.03 | 0.62 | 0.81 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10549 | 1359 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2024-03-14 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 14.79 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2024-03-10 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 6CNB | 7530 | 2024-03-25 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 14.17 | 0.01 | 1.836 | 32.34 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✘ | 7L1S | 23117 | 2024-03-19 | 2020-12-15 | 3.6 | 2.22 | — | 2.3 | 0.011 | 1.81 | 37.0 | 0.12 | 14.87 | 0.01 | 2.011 | 4.65 | 4.07 | 3.3 | 96.6 | 0.2 | -0.43 | 0.62 | 0.68 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24176 | 3118 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 7M42 | 23662 | 2024-03-11 | 2021-03-19 | 3.3 | 3.66 | — | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 13.90 | 0.00 | 2.128 | 6.83 | 1.22 | 3.5 | 96.4 | 0.1 | -2.65 | 0.63 | 0.65 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8115 | 1070 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8FE1 | 29019 | 2024-03-16 | 2022-12-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15445 | 1772 | 10 | 0 | 48 | 0 | 0 | logfile |
✘ | 8F7X | 28912 | 2024-03-11 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WY8 | 32887 | 2024-03-11 | 2022-02-15 | 2.83 | 2.24 | — | 2.0 | 0.007 | 0.81 | 0.0 | 0.05 | 12.03 | 0.01 | 2.220 | 1.00 | 0.00 | 4.1 | 95.9 | 0.0 | -0.39 | 0.76 | 0.76 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8049 | 1015 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2024-03-15 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7UPi | 26667 | 2024-03-11 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.56 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6HRA | 0257 | 2024-03-15 | 2018-09-26 | 3.7 | 3.89 | 3.68 | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 9.85 | 0.01 | 2.227 | 6.64 | 0.18 | 7.4 | 92.6 | 0.0 | -5.34 | 0.70 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10818 | 1450 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8CW9 | 27024 | 2024-03-21 | 2022-05-18 | 3.46 | 2.48 | — | 2.2 | 0.002 | 0.67 | 0.0 | 0.05 | 13.45 | 0.01 | 2.196 | 3.46 | 1.25 | 5.7 | 94.1 | 0.1 | -1.23 | 0.74 | 0.73 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20229 | 2658 | 18 | 0 | 3 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2024-03-15 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✘ | 8iNK | 35599 | 2024-03-28 | 2023-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152807 | 8896 | 54 | 3766 | 2 | 0 | 0 | logfile |
✘ | 7NG8 | 12309 | 2024-03-18 | 2021-02-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20173 | 1341 | 4 | 0 | 0 | 0 | 9979 | logfile |
✘ | 7W02 | 32234 | 2024-03-15 | 2021-11-17 | 3.3 | 3.44 | — | 3.4 | 0.007 | 0.89 | 0.0 | 0.05 | 15.17 | 0.00 | 1.892 | 7.36 | 0.23 | 10.9 | 89.1 | 0.1 | -3.18 | 0.68 | 0.87 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12326 | 1566 | 1 | 0 | 6 | 0 | 0 | logfile |
✘ | 7ZRi | 14915 | 2024-03-15 | 2022-05-04 | 3.5 | 3.62 | 3.50 | 3.6 | 0.006 | 0.92 | 0.0 | 0.05 | 16.16 | 0.01 | 2.196 | 7.56 | 0.00 | 4.6 | 95.4 | 0.0 | -1.22 | 0.70 | 0.82 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11014 | 1450 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 7MD3 | 23764 | 2024-03-14 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✘ | 7VDD | 31914 | 2024-03-15 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |