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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iX1 | 35786 | 2023-12-08 | 2023-03-31 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7896 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-12-09 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 7Y7B | 33659 | 2023-12-08 | 2022-06-22 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60515 | 5082 | 55 | 0 | 562 | 0 | 0 | logfile |
✘ | 8H87 | 34531 | 2023-12-08 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-12-08 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 8F0H | 28757 | 2023-12-07 | 2022-11-02 | 3.18 | 3.63 | 3.09 | 3.5 | 0.003 | 0.50 | 0.0 | 0.04 | 9.40 | 0.00 | 2.256 | 7.02 | 0.38 | 4.0 | 96.0 | 0.0 | -0.58 | 0.74 | 0.80 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4959 | 634 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-12-09 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.72 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8JT9 | 36637 | 2023-12-07 | 2023-06-21 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2872 | 384 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-12-07 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SA5 | 40265 | 2023-12-08 | 2023-03-31 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7649 | 0 | 4 | 345 | 2 | 0 | 0 | logfile |
✘ | 8iUH | 35722 | 2023-12-08 | 2023-03-24 | 3.4 | 3.08 | 3.43 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 12.78 | 0.00 | 1.886 | 8.52 | 0.02 | 2.6 | 97.4 | 0.0 | -1.63 | 0.64 | 0.68 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58239 | 6863 | 32 | 162 | 10 | 0 | 0 | logfile |
✘ | 8BMQ | 16121 | 2023-12-08 | 2022-11-10 | 3.6 | 3.94 | 3.58 | 4.0 | 0.006 | 0.76 | 0.0 | 0.05 | 15.48 | 0.00 | 2.190 | 7.37 | 0.00 | 5.5 | 94.5 | 0.0 | -0.07 | 0.72 | 0.81 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7784 | 987 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-12-09 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iDE | 35365 | 2023-12-08 | 2023-02-13 | 3.21 | 3.58 | 3.38 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 13.14 | 0.00 | 1.906 | 14.45 | 0.24 | 14.1 | 85.4 | 0.5 | -1.37 | 0.75 | 0.77 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8393 | 1177 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-12-07 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-12-08 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8E44 | 27879 | 2023-12-09 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.41 | 0.0 | 0.04 | 22.34 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✘ | 6LN6 | 0925 | 2023-12-08 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.49 | 0.00 | 2.035 | 6.53 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 8S9B | 40238 | 2023-12-10 | 2023-03-27 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13409 | 1565 | 10 | 0 | 29 | 30 | 0 | logfile |
✘ | 8FGX | 29077 | 2023-12-09 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |