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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XJG | 33226 | 2023-12-10 | 2022-04-17 | 2.51 | 2.02 | 2.63 | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 24.12 | 0.01 | 1.962 | 7.64 | 3.44 | 4.1 | 95.9 | 0.0 | -0.23 | 0.76 | 0.76 | 2.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13167 | 1066 | 12 | 216 | 2 | 0 | 0 | logfile |
✘ | 7M5X | 23684 | 2023-12-11 | 2021-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15476 | 1000 | 1 | 0 | 25 | 11 | 7545 | logfile |
✘ | 6PUY | 20484 | 2023-12-09 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 7URM | 26714 | 2023-12-07 | 2022-04-22 | 3.0 | 3.11 | 3.56 | 2.9 | 0.009 | 1.41 | 0.0 | 0.11 | 27.77 | 0.01 | 2.440 | 0.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.14 | 0.53 | — | 3.0 | 0.007 | 1.15 | 0.0 | 0.05 | 27.25 | 0.01 | 1.995 | 31.69 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.69 | 0.15 | 0.53 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✘ | 6YLX | 10841 | 2023-12-10 | 2020-04-07 | 3.9 | 3.78 | 3.86 | 3.8 | 0.019 | 1.57 | 1.0 | 0.08 | 22.23 | 0.01 | 1.989 | 6.50 | 0.65 | 3.4 | 96.6 | 0.0 | -3.91 | 0.81 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 118882 | 7493 | 47 | 2757 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-12-08 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DZV | 8940 | 2023-12-08 | 2018-07-05 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6121 | 765 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2023-12-08 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7Li9 | 23364 | 2023-12-08 | 2021-01-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6174 | 767 | 5 | 0 | 13 | 0 | 0 | logfile |
✘ | 7W0M | 32244 | 2023-12-09 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.005 | 0.81 | 0.0 | 0.05 | 13.45 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7NEZ | 12295 | 2023-12-09 | 2021-02-05 | 3.39 | 3.83 | — | 3.7 | 0.009 | 0.80 | 3.0 | 0.06 | 9.75 | 0.00 | 1.958 | 13.83 | 0.67 | 7.0 | 93.0 | 0.0 | -2.47 | 0.59 | 0.73 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12345 | 1576 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2023-12-08 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 7YG8 | 33811 | 2023-12-08 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 23.19 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.64 | 0.0 | 0.04 | 23.44 | 0.00 | 1.840 | 19.39 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-12-08 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6WWZ | 21950 | 2023-12-08 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.07 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CUW | 30475 | 2023-12-09 | 2020-08-25 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9839 | 1199 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 7YGB | 33814 | 2023-12-08 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 22.93 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 22.84 | 0.00 | 1.839 | 13.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.92 | 0.92 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |
✘ | 7ZES | 14692 | 2023-12-10 | 2022-03-31 | 3.1 | 3.32 | 3.11 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.69 | 0.01 | 1.966 | 5.90 | 0.00 | 2.3 | 97.7 | 0.0 | 0.35 | 0.75 | 0.82 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13538 | 1654 | 6 | 10 | 4 | 0 | 0 | logfile |
✘ | 8HLV | 34883 | 2023-12-10 | 2022-12-01 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8136 | 669 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-12-07 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |