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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UDG | 42149 | 2024-03-18 | 2023-09-28 | 4.98 | 6.27 | 5.10 | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 11.43 | 0.00 | 2.089 | 3.07 | 0.00 | 2.8 | 97.1 | 0.2 | -0.18 | 0.86 | 0.74 | — | 5.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 1.953 | 12.44 | 0.00 | 4.9 | 94.9 | 0.2 | 0.67 | 1.04 | 0.87 | 0.76 | — | 19524 | 1317 | 7 | 0 | 0 | 0 | 9627 | logfile |
✔ | 6HV9 | 0288 | 2024-03-25 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.30 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 13.38 | 0.00 | 2.088 | 16.17 | 0.00 | 8.2 | 91.7 | 0.1 | -1.72 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2024-03-17 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 14.12 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.47 | 0.00 | 2.131 | 18.62 | 0.00 | 3.5 | 96.5 | 0.0 | 0.15 | 1.08 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2024-03-20 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 16.64 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.66 | 0.0 | 0.05 | 14.39 | 0.00 | 2.094 | 21.82 | 0.00 | 7.2 | 92.8 | 0.0 | -1.47 | 1.25 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |
✔ | 8ET2 | 28584 | 2024-03-24 | 2022-10-15 | 4.96 | 5.56 | 5.14 | 5.6 | 0.004 | 1.00 | 0.0 | 0.05 | 13.70 | 0.01 | 1.879 | 23.18 | 0.00 | 11.7 | 88.3 | 0.0 | -4.06 | 0.69 | 0.49 | — | 5.5 | 0.003 | 0.80 | 0.0 | 0.05 | 13.75 | 0.00 | 1.987 | 16.56 | 0.00 | 9.5 | 90.5 | 0.0 | -3.48 | 0.68 | 0.69 | 0.48 | — | 43584 | 5304 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2024-03-20 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.131 | 22.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✘ | 8HKV | 34861 | 2024-03-21 | 2022-11-28 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 8C95 | 16502 | 2024-03-24 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 24.56 | 0.01 | 1.894 | 49.43 | 0.00 | 10.6 | 89.4 | 0.0 | -1.86 | 1.96 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2024-03-16 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.01 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.012 | 1.04 | 0.0 | 0.06 | 35.58 | 0.01 | 1.810 | 186.47 | 0.00 | 13.0 | 86.5 | 0.5 | -2.30 | 3.51 | 0.87 | 0.83 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 8JTD | 36641 | 2024-03-17 | 2023-06-21 | 4.9 | 4.51 | 4.64 | 4.6 | 0.005 | 0.93 | 0.0 | 0.07 | 17.49 | 0.00 | 2.048 | 20.29 | 0.00 | 3.8 | 96.1 | 0.1 | -0.29 | 0.63 | 0.55 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 12.46 | 0.00 | 2.122 | 17.40 | 0.00 | 4.1 | 95.9 | 0.0 | -0.36 | 0.61 | 0.66 | 0.63 | — | 17275 | 1978 | 51 | 0 | 128 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2024-03-23 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 15.22 | 0.00 | 2.152 | 6.63 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2024-03-18 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.91 | 0.0 | 0.04 | 15.60 | 0.00 | 2.000 | 25.15 | 0.03 | 1.7 | 98.2 | 0.1 | 1.85 | 2.38 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 6SKM | 10228 | 2024-03-15 | 2019-08-16 | 4.9 | 5.09 | 4.66 | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.449 | 9.83 | 0.18 | 1.4 | 98.6 | 0.0 | -1.03 | 0.68 | 0.74 | — | 4.9 | 0.004 | 0.77 | 0.0 | 0.05 | 13.13 | 0.01 | 2.154 | 20.23 | 0.18 | 3.2 | 96.8 | 0.0 | 0.23 | 2.74 | 0.70 | 0.80 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SAL | 40273 | 2024-03-17 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 4.9 | 0.006 | 0.97 | 0.0 | 0.05 | 13.56 | 0.01 | 1.992 | 37.35 | 0.00 | 11.1 | 88.7 | 0.2 | -2.29 | 2.71 | 0.80 | 0.79 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S0E | 24788 | 2024-03-11 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.004 | 0.79 | 0.0 | 0.05 | 12.96 | 0.01 | 2.080 | 22.56 | 0.00 | 10.5 | 89.3 | 0.2 | -1.99 | 1.17 | 0.78 | 0.73 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2024-03-17 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 9.68 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 6.61 | 0.00 | 1.853 | 3.49 | 0.00 | 4.5 | 95.5 | 0.0 | 2.20 | 0.65 | 0.84 | 0.80 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 7WZN | 32907 | 2024-03-20 | 2022-02-18 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27190 | 3726 | 30 | 0 | 211 | 0 | 0 | logfile |
✘ | 5Z58 | 6891 | 2024-03-19 | 2018-01-17 | 4.9 | 5.11 | — | 4.8 | 0.011 | 1.48 | 31.0 | 0.10 | 16.33 | 0.01 | 1.766 | 28.14 | 4.95 | 6.4 | 92.4 | 1.2 | -2.65 | 0.58 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94673 | 12915 | 51 | 390 | 12 | 0 | 0 | logfile |
✔ | 7AFK | 11768 | 2024-03-17 | 2020-09-19 | 4.9 | 5.45 | 4.72 | 3.0 | 0.008 | 0.89 | 1.0 | 0.05 | 23.96 | 0.02 | 1.519 | 42.37 | 0.00 | 8.4 | 91.6 | 0.0 | -2.88 | 0.87 | 0.80 | — | 2.9 | 0.003 | 0.66 | 0.0 | 0.03 | 22.80 | 0.01 | 1.918 | 26.93 | 0.00 | 4.2 | 95.8 | 0.0 | -0.50 | 1.32 | 0.88 | 0.84 | — | 18521 | 1108 | 11 | 456 | 13 | 0 | 0 | logfile |