Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HV9	0288	2022-12-22	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.27	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.008	0.85	0.0	0.04	13.45	0.00	2.033	16.06	0.02	8.6	91.4	0.1	-1.61	1.66	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✔	7V02	26927	2022-12-13	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	13.46	0.00	2.048	13.33	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.65	0.0	0.04	14.04	0.00	2.133	21.48	0.05	3.7	96.3	0.0	-0.22	1.12	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	8A5Y	15199	2022-12-12	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.62	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.69	0.0	0.04	13.59	0.00	1.832	16.25	0.02	4.5	95.3	0.2	0.54	0.68	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	7Q9i	13870	2022-12-16	2021-11-12	4.9	5.59	—	5.3	0.003	0.54	0.0	0.04	10.81	0.00	2.216	4.81	0.80	3.4	96.5	0.0	-0.34	0.76	0.63	—	5.3	0.003	0.63	0.0	0.04	11.73	0.00	2.050	15.52	0.06	3.3	96.7	0.0	-0.26	1.94	0.79	0.71	—	30966	3881	24	0	53	0	0	logfile
✔	7ELE	31182	2022-12-12	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	19.44	0.01	2.210	17.95	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.72	0.0	0.04	15.87	0.01	2.058	20.17	0.10	8.6	91.2	0.2	-1.47	1.33	0.87	0.76	—	10733	1137	2	83	0	0	0	logfile
✔	7PD4	13330	2022-12-11	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.74	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.79	0.0	0.04	13.65	0.00	2.129	18.47	0.00	5.8	94.2	0.0	-0.39	1.25	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	7P2Q	13172	2022-12-11	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7Z8L	14556	2022-12-13	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.003	0.57	0.0	0.04	6.17	0.00	1.902	4.71	0.00	3.8	96.2	0.0	2.16	0.60	0.84	0.80	—	16513	3311	3	0	5	0	0	logfile
✔	7S0E	24788	2022-12-12	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.77	0.0	0.05	13.00	0.00	1.992	17.81	0.00	8.6	91.2	0.2	-1.90	1.17	0.78	0.71	—	8248	1076	3	0	0	0	0	logfile
✔	7BWA	30231	2022-12-12	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.31	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.73	0.0	0.05	14.22	0.00	2.133	18.38	0.00	8.1	91.9	0.0	-2.90	1.70	0.79	0.59	—	11670	1444	4	0	0	0	0	logfile
✔	7P2P	13171	2022-12-11	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.08	0.0	0.07	11.21	0.01	2.325	4.37	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.83	0.0	0.05	12.94	0.01	2.198	17.60	0.19	7.4	92.6	0.0	-1.97	1.19	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✔	6ZQF	11362	2022-12-16	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.005	0.94	0.0	0.05	18.65	0.00	1.930	21.25	0.00	12.6	87.1	0.3	-2.62	1.55	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✔	7CCR	30340	2022-12-16	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.21	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.004	0.66	0.0	0.04	27.00	0.00	2.040	21.55	0.05	5.2	94.8	0.0	0.28	1.49	0.88	0.76	—	29722	2202	22	588	0	0	0	logfile
✔	7MoA	23922	2022-12-12	2021-05-01	4.9	4.75	—	4.0	0.011	1.36	0.0	0.08	18.24	0.01	1.983	27.95	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.74	0.0	0.05	13.32	0.00	2.117	22.38	0.07	6.9	93.0	0.1	-1.35	1.47	0.84	0.79	—	12511	1580	5	0	12	0	0	logfile
✔	7KPW	22990	2022-12-11	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7K9L	22754	2022-12-12	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.64	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.003	0.72	0.0	0.04	14.31	0.00	2.212	17.00	0.72	3.8	96.2	0.0	-0.32	1.07	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	7RSi	24672	2022-12-12	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.002	0.56	0.0	0.04	12.88	0.00	1.878	13.91	0.00	5.6	94.4	0.0	-0.11	1.20	0.78	0.50	—	10886	686	2	0	2	0	5400	logfile
✔	7AFK	11768	2022-12-14	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.9	0.006	0.83	0.0	0.04	18.01	0.01	1.817	46.34	0.00	7.5	92.5	0.0	-1.52	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7STi	25429	2022-12-13	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.90	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.003	0.65	0.0	0.05	13.46	0.00	2.134	22.71	0.00	8.5	91.3	0.2	-1.38	1.62	0.89	0.83	—	13531	1678	3	0	0	0	0	logfile

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