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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HV9 | 0288 | 2022-12-22 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.27 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.008 | 0.85 | 0.0 | 0.04 | 13.45 | 0.00 | 2.033 | 16.06 | 0.02 | 8.6 | 91.4 | 0.1 | -1.61 | 1.66 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2022-12-13 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.33 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.04 | 0.00 | 2.133 | 21.48 | 0.05 | 3.7 | 96.3 | 0.0 | -0.22 | 1.12 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 8A5Y | 15199 | 2022-12-12 | 2022-06-16 | 4.9 | 5.07 | 4.78 | 4.9 | 0.004 | 0.88 | 4.0 | 0.05 | 13.25 | 0.00 | 1.998 | 18.62 | 0.05 | 3.9 | 95.8 | 0.4 | 0.86 | 0.85 | 0.76 | — | 4.9 | 0.003 | 0.69 | 0.0 | 0.04 | 13.59 | 0.00 | 1.832 | 16.25 | 0.02 | 4.5 | 95.3 | 0.2 | 0.54 | 0.68 | 0.86 | 0.78 | — | 57866 | 7213 | 18 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Q9i | 13870 | 2022-12-16 | 2021-11-12 | 4.9 | 5.59 | — | 5.3 | 0.003 | 0.54 | 0.0 | 0.04 | 10.81 | 0.00 | 2.216 | 4.81 | 0.80 | 3.4 | 96.5 | 0.0 | -0.34 | 0.76 | 0.63 | — | 5.3 | 0.003 | 0.63 | 0.0 | 0.04 | 11.73 | 0.00 | 2.050 | 15.52 | 0.06 | 3.3 | 96.7 | 0.0 | -0.26 | 1.94 | 0.79 | 0.71 | — | 30966 | 3881 | 24 | 0 | 53 | 0 | 0 | logfile |
✔ | 7ELE | 31182 | 2022-12-12 | 2021-04-09 | 4.9 | 8.62 | — | 7.5 | 0.007 | 1.16 | 0.0 | 0.06 | 19.44 | 0.01 | 2.210 | 17.95 | 8.44 | 9.1 | 90.1 | 0.8 | -3.55 | 0.87 | 0.71 | — | 7.5 | 0.003 | 0.72 | 0.0 | 0.04 | 15.87 | 0.01 | 2.058 | 20.17 | 0.10 | 8.6 | 91.2 | 0.2 | -1.47 | 1.33 | 0.87 | 0.76 | — | 10733 | 1137 | 2 | 83 | 0 | 0 | 0 | logfile |
✔ | 7PD4 | 13330 | 2022-12-11 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.74 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.003 | 0.79 | 0.0 | 0.04 | 13.65 | 0.00 | 2.129 | 18.47 | 0.00 | 5.8 | 94.2 | 0.0 | -0.39 | 1.25 | 0.73 | 0.73 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P2Q | 13172 | 2022-12-11 | 2021-07-06 | 4.9 | 4.54 | — | 4.3 | 0.003 | 0.80 | 0.0 | 0.05 | 8.69 | 0.01 | 2.264 | 4.28 | 0.00 | 5.0 | 95.0 | 0.0 | -3.09 | 0.77 | 0.72 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.04 | 12.53 | 0.00 | 2.212 | 14.61 | 0.00 | 4.7 | 95.3 | 0.0 | -0.39 | 1.80 | 0.80 | 0.74 | — | 4780 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2022-12-13 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 6.41 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 6.17 | 0.00 | 1.902 | 4.71 | 0.00 | 3.8 | 96.2 | 0.0 | 2.16 | 0.60 | 0.84 | 0.80 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7S0E | 24788 | 2022-12-12 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.003 | 0.77 | 0.0 | 0.05 | 13.00 | 0.00 | 1.992 | 17.81 | 0.00 | 8.6 | 91.2 | 0.2 | -1.90 | 1.17 | 0.78 | 0.71 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BWA | 30231 | 2022-12-12 | 2020-04-14 | 4.9 | 5.10 | 4.70 | 4.8 | 0.004 | 0.77 | 0.0 | 0.05 | 15.31 | 0.00 | 1.970 | 41.31 | 0.00 | 13.4 | 86.6 | 0.0 | -4.15 | 0.80 | 0.64 | — | 4.8 | 0.003 | 0.73 | 0.0 | 0.05 | 14.22 | 0.00 | 2.133 | 18.38 | 0.00 | 8.1 | 91.9 | 0.0 | -2.90 | 1.70 | 0.79 | 0.59 | — | 11670 | 1444 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P2P | 13171 | 2022-12-11 | 2021-07-06 | 4.9 | 4.40 | 5.09 | 4.3 | 0.005 | 1.08 | 0.0 | 0.07 | 11.21 | 0.01 | 2.325 | 4.37 | 0.19 | 8.1 | 91.9 | 0.0 | -3.94 | 0.76 | 0.66 | — | 4.2 | 0.003 | 0.83 | 0.0 | 0.05 | 12.94 | 0.01 | 2.198 | 17.60 | 0.19 | 7.4 | 92.6 | 0.0 | -1.97 | 1.19 | 0.78 | 0.72 | — | 4783 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2022-12-16 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 17.00 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.94 | 0.0 | 0.05 | 18.65 | 0.00 | 1.930 | 21.25 | 0.00 | 12.6 | 87.1 | 0.3 | -2.62 | 1.55 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 7CCR | 30340 | 2022-12-16 | 2020-06-17 | 4.9 | 6.57 | — | 4.8 | 0.007 | 0.96 | 0.0 | 0.06 | 24.75 | 0.01 | 1.593 | 7.21 | 0.11 | 4.4 | 95.6 | 0.0 | -2.64 | 0.83 | 0.67 | — | 4.8 | 0.004 | 0.66 | 0.0 | 0.04 | 27.00 | 0.00 | 2.040 | 21.55 | 0.05 | 5.2 | 94.8 | 0.0 | 0.28 | 1.49 | 0.88 | 0.76 | — | 29722 | 2202 | 22 | 588 | 0 | 0 | 0 | logfile |
✔ | 7MoA | 23922 | 2022-12-12 | 2021-05-01 | 4.9 | 4.75 | — | 4.0 | 0.011 | 1.36 | 0.0 | 0.08 | 18.24 | 0.01 | 1.983 | 27.95 | 10.24 | 8.6 | 91.0 | 0.5 | -1.69 | 0.83 | 0.76 | — | 3.9 | 0.003 | 0.74 | 0.0 | 0.05 | 13.32 | 0.00 | 2.117 | 22.38 | 0.07 | 6.9 | 93.0 | 0.1 | -1.35 | 1.47 | 0.84 | 0.79 | — | 12511 | 1580 | 5 | 0 | 12 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2022-12-11 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.8 | 0.005 | 0.86 | 0.0 | 0.04 | 6.91 | 0.00 | 2.059 | 5.41 | 0.00 | 14.6 | 84.8 | 0.6 | -1.66 | 2.04 | 0.83 | 0.83 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2022-12-12 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.64 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 14.31 | 0.00 | 2.212 | 17.00 | 0.72 | 3.8 | 96.2 | 0.0 | -0.32 | 1.07 | 0.69 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2022-12-12 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 6.36 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.88 | 0.00 | 1.878 | 13.91 | 0.00 | 5.6 | 94.4 | 0.0 | -0.11 | 1.20 | 0.78 | 0.50 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 7AFK | 11768 | 2022-12-14 | 2020-09-19 | 4.9 | 5.45 | 4.73 | 3.0 | 0.008 | 0.88 | 1.0 | 0.05 | 18.40 | 0.02 | 1.519 | 42.50 | 0.00 | 8.4 | 91.6 | 0.0 | -2.88 | 0.87 | 0.80 | — | 2.9 | 0.006 | 0.83 | 0.0 | 0.04 | 18.01 | 0.01 | 1.817 | 46.34 | 0.00 | 7.5 | 92.5 | 0.0 | -1.52 | 0.78 | 0.88 | 0.85 | — | 18521 | 1108 | 11 | 456 | 13 | 0 | 0 | logfile |
✔ | 7STi | 25429 | 2022-12-13 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.90 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.05 | 13.46 | 0.00 | 2.134 | 22.71 | 0.00 | 8.5 | 91.3 | 0.2 | -1.38 | 1.62 | 0.89 | 0.83 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |