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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 4CE4 | 2490 | 2023-02-24 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 6GNi | 0044 | 2023-02-20 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.32 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.69 | 0.01 | 1.878 | 12.42 | 0.00 | 2.9 | 96.9 | 0.2 | 0.82 | 1.64 | 0.48 | 0.73 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7AFK | 11768 | 2023-02-22 | 2020-09-19 | 4.9 | 5.45 | 4.72 | 3.0 | 0.008 | 0.89 | 1.0 | 0.05 | 18.34 | 0.02 | 1.519 | 42.31 | 0.00 | 8.4 | 91.6 | 0.0 | -2.88 | 0.87 | 0.80 | — | 2.6 | 0.004 | 0.72 | 0.0 | 0.04 | 17.57 | 0.01 | 1.856 | 35.81 | 0.00 | 4.9 | 95.1 | 0.0 | -1.08 | 0.78 | 0.88 | 0.84 | — | 18521 | 1108 | 11 | 456 | 13 | 0 | 0 | logfile |
✔ | 6SKM | 10228 | 2023-02-19 | 2019-08-16 | 4.9 | 5.09 | 4.66 | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.449 | 9.83 | 0.18 | 1.4 | 98.6 | 0.0 | -1.03 | 0.68 | 0.74 | — | 4.9 | 0.004 | 0.82 | 0.0 | 0.05 | 12.95 | 0.01 | 2.147 | 22.65 | 0.18 | 3.4 | 96.6 | 0.0 | -0.07 | 1.79 | 0.71 | 0.81 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2023-02-21 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.66 | 0.0 | 0.04 | 22.27 | 0.00 | 1.967 | 24.18 | 0.00 | 5.7 | 94.3 | 0.0 | -1.27 | 2.95 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-02-25 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ELE | 31182 | 2023-02-19 | 2021-04-09 | 4.9 | 8.62 | — | 7.5 | 0.007 | 1.16 | 0.0 | 0.06 | 19.44 | 0.01 | 2.210 | 17.86 | 8.44 | 9.1 | 90.1 | 0.8 | -3.55 | 0.87 | 0.71 | — | 7.5 | 0.003 | 0.75 | 0.0 | 0.04 | 16.18 | 0.00 | 2.040 | 28.54 | 0.00 | 9.8 | 90.0 | 0.2 | -1.98 | 1.67 | 0.88 | 0.77 | — | 10733 | 1137 | 2 | 83 | 0 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2023-02-17 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S0E | 24788 | 2023-02-18 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.05 | 12.97 | 0.01 | 2.041 | 19.49 | 0.00 | 9.0 | 90.8 | 0.2 | -1.85 | 1.18 | 0.78 | 0.72 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2023-02-22 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 6.41 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 7.01 | 0.00 | 1.822 | 7.86 | 0.00 | 6.5 | 93.5 | 0.0 | 0.20 | 0.73 | 0.84 | 0.81 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2023-02-24 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.73 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 14.59 | 0.01 | 2.170 | 16.48 | 0.00 | 4.4 | 95.0 | 0.6 | 0.64 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2023-02-19 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.26 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.04 | 13.74 | 0.00 | 2.233 | 15.43 | 0.00 | 5.0 | 95.0 | 0.0 | -0.40 | 1.05 | 0.68 | 0.77 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-02-16 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.03 | 16.42 | 0.00 | 2.384 | 6.87 | 0.00 | 9.0 | 91.0 | 0.0 | 0.30 | 3.43 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9i | 13870 | 2023-02-27 | 2021-11-12 | 4.9 | 5.59 | — | 5.3 | 0.003 | 0.54 | 0.0 | 0.04 | 10.81 | 0.00 | 2.216 | 4.73 | 0.80 | 3.4 | 96.5 | 0.0 | -0.34 | 0.76 | 0.63 | — | 5.3 | 0.003 | 0.64 | 0.0 | 0.04 | 11.70 | 0.00 | 2.098 | 15.78 | 0.06 | 3.7 | 96.3 | 0.0 | -0.36 | 1.94 | 0.80 | 0.71 | — | 30966 | 3881 | 24 | 0 | 53 | 0 | 0 | logfile |
✔ | 5LJo | 4061 | 2023-02-25 | 2016-07-19 | 4.9 | 7.28 | — | 5.9 | 0.014 | 1.69 | 1.0 | 0.08 | 11.01 | 0.01 | 2.147 | 5.45 | 0.15 | 9.4 | 86.8 | 3.8 | -2.52 | 0.69 | 0.58 | — | 5.9 | 0.003 | 0.67 | 0.0 | 0.04 | 12.72 | 0.00 | 1.935 | 15.16 | 0.00 | 10.8 | 88.9 | 0.3 | -2.08 | 1.31 | 0.79 | 0.79 | — | 24947 | 1624 | 5 | 0 | 0 | 0 | 12255 | logfile |
✔ | 7PD4 | 13330 | 2023-02-18 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.003 | 0.78 | 0.0 | 0.04 | 13.56 | 0.00 | 2.126 | 18.85 | 0.00 | 5.8 | 94.2 | 0.0 | -0.39 | 1.28 | 0.73 | 0.73 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VoT | 8721 | 2023-02-22 | 2017-05-03 | 4.9 | 4.98 | — | 4.9 | 0.004 | 0.67 | 0.0 | 0.04 | 7.57 | 0.00 | 2.126 | 11.91 | 0.00 | 8.5 | 91.5 | 0.0 | -4.03 | 0.63 | 0.71 | — | 4.9 | 0.003 | 0.69 | 0.0 | 0.04 | 11.01 | 0.00 | 2.137 | 14.03 | 0.00 | 6.3 | 93.7 | 0.0 | 0.08 | 0.85 | 0.65 | 0.80 | — | 16463 | 2322 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXQ | 28659 | 2023-02-19 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 6.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.89 | 0.00 | 2.068 | 17.98 | 0.00 | 5.3 | 94.5 | 0.2 | -0.50 | 2.54 | 0.58 | 0.63 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CCR | 30340 | 2023-02-27 | 2020-06-17 | 4.9 | 6.57 | — | 4.8 | 0.007 | 0.96 | 0.0 | 0.06 | 24.75 | 0.01 | 1.593 | 7.02 | 0.11 | 4.4 | 95.6 | 0.0 | -2.64 | 0.83 | 0.67 | — | 4.8 | 0.006 | 0.76 | 0.0 | 0.04 | 27.65 | 0.01 | 2.025 | 31.90 | 0.05 | 5.6 | 94.4 | 0.0 | -0.43 | 1.88 | 0.88 | 0.77 | — | 29722 | 2202 | 22 | 588 | 0 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2023-02-17 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.25 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.47 | 0.0 | 0.03 | 12.80 | 0.00 | 1.958 | 77.44 | 0.00 | 4.3 | 95.7 | 0.0 | 1.53 | 1.24 | 0.66 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |