Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SAL	40273	2023-08-15	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.004	0.83	0.0	0.05	13.29	0.01	2.042	24.63	0.00	9.2	90.7	0.1	-1.99	2.48	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile
✘	5Z58	6891	2023-08-23	2018-01-17	4.9	5.11	—	4.8	0.011	1.48	31.0	0.10	14.17	0.01	1.766	28.14	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile
✔	7S0E	24788	2023-08-10	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.76	0.0	0.05	12.97	0.01	2.041	19.51	0.00	9.0	90.8	0.2	-1.85	1.18	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✘	7WZN	32907	2023-08-19	2022-02-18	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27190	3726	30	0	211	0	0	logfile
✔	8oSL	17160	2023-08-13	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.45	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	7.0	0.005	0.63	0.0	0.04	34.49	0.00	2.021	72.35	0.00	5.2	94.8	0.0	1.59	2.75	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8DS6	27684	2023-08-11	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.003	0.60	0.0	0.04	11.52	0.00	2.256	10.07	0.00	2.4	97.6	0.0	1.48	1.12	0.85	0.63	—	10135	669	2	0	0	0	5107	logfile
✔	6R23	4708	2023-08-09	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	8EXQ	28659	2023-08-11	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✘	8EP0	28494	2023-08-18	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	3iZK	5247	2023-08-11	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✔	6VAB	21135	2023-08-09	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7PD4	13330	2023-08-10	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	6FVX	4323	2023-08-10	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.06	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	4.9	0.004	0.85	1.0	0.05	14.48	0.01	1.862	19.81	0.08	4.3	95.5	0.2	-0.59	1.27	0.54	0.76	—	110471	14020	53	0	12	0	0	logfile
✔	6PoM	20416	2023-08-09	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7P2Q	13172	2023-08-09	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	8.76	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.74	0.0	0.04	12.28	0.00	2.213	12.52	0.00	4.1	95.9	0.0	-0.27	1.68	0.80	0.75	—	4780	587	5	0	5	0	0	logfile
✔	7P2P	13171	2023-08-09	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	11.29	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.85	0.0	0.05	12.62	0.00	2.178	17.91	0.19	6.9	93.1	0.0	-2.04	1.15	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✔	5VFR	8665	2023-08-25	2017-04-09	4.9	5.02	—	4.8	0.006	1.24	5.0	0.07	11.75	0.01	2.042	10.70	0.74	9.6	89.8	0.6	-4.40	0.71	0.63	—	4.8	0.003	0.80	0.0	0.05	13.13	0.00	2.039	20.78	0.05	9.8	90.1	0.1	-1.68	1.27	0.71	0.69	—	99908	12868	51	0	5	0	0	logfile
✘	6UXB	20932	2023-08-11	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	6oCE	20017	2023-08-12	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.76	0.0	0.04	12.52	0.01	2.176	12.97	0.00	12.3	87.7	0.0	-2.82	1.19	0.46	0.63	—	11228	1378	2	0	0	0	0	logfile
✔	8EJ5	28176	2023-08-09	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.77	0.0	0.04	14.35	0.00	2.123	17.17	0.00	4.2	95.5	0.3	-0.12	2.26	0.46	0.75	—	5818	727	4	0	0	0	0	logfile

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