Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	4CE4	2490	2023-02-24	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	6GNi	0044	2023-02-20	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.32	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.64	0.0	0.04	13.69	0.01	1.878	12.42	0.00	2.9	96.9	0.2	0.82	1.64	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✔	7AFK	11768	2023-02-22	2020-09-19	4.9	5.45	4.72	3.0	0.008	0.89	1.0	0.05	18.34	0.02	1.519	42.31	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.6	0.004	0.72	0.0	0.04	17.57	0.01	1.856	35.81	0.00	4.9	95.1	0.0	-1.08	0.78	0.88	0.84	—	18521	1108	11	456	13	0	0	logfile
✔	6SKM	10228	2023-02-19	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.83	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.82	0.0	0.05	12.95	0.01	2.147	22.65	0.18	3.4	96.6	0.0	-0.07	1.79	0.71	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6UPK	20840	2023-02-21	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.39	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.66	0.0	0.04	22.27	0.00	1.967	24.18	0.00	5.7	94.3	0.0	-1.27	2.95	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✘	8EP0	28494	2023-02-25	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	7ELE	31182	2023-02-19	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	19.44	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.75	0.0	0.04	16.18	0.00	2.040	28.54	0.00	9.8	90.0	0.2	-1.98	1.67	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	6VAB	21135	2023-02-17	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7S0E	24788	2023-02-18	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.76	0.0	0.05	12.97	0.01	2.041	19.49	0.00	9.0	90.8	0.2	-1.85	1.18	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7Z8L	14556	2023-02-22	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	3J1B	5391	2023-02-24	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.79	0.0	0.05	14.59	0.01	2.170	16.48	0.00	4.4	95.0	0.6	0.64	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	7K9L	22754	2023-02-19	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.26	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.003	0.78	0.0	0.04	13.74	0.00	2.233	15.43	0.00	5.0	95.0	0.0	-0.40	1.05	0.68	0.77	—	10472	1372	4	0	0	0	0	logfile
✔	6R23	4708	2023-02-16	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.60	0.0	0.03	16.42	0.00	2.384	6.87	0.00	9.0	91.0	0.0	0.30	3.43	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	7Q9i	13870	2023-02-27	2021-11-12	4.9	5.59	—	5.3	0.003	0.54	0.0	0.04	10.81	0.00	2.216	4.73	0.80	3.4	96.5	0.0	-0.34	0.76	0.63	—	5.3	0.003	0.64	0.0	0.04	11.70	0.00	2.098	15.78	0.06	3.7	96.3	0.0	-0.36	1.94	0.80	0.71	—	30966	3881	24	0	53	0	0	logfile
✔	5LJo	4061	2023-02-25	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.67	0.0	0.04	12.72	0.00	1.935	15.16	0.00	10.8	88.9	0.3	-2.08	1.31	0.79	0.79	—	24947	1624	5	0	0	0	12255	logfile
✔	7PD4	13330	2023-02-18	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	5VoT	8721	2023-02-22	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.69	0.0	0.04	11.01	0.00	2.137	14.03	0.00	6.3	93.7	0.0	0.08	0.85	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	8EXQ	28659	2023-02-19	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	7CCR	30340	2023-02-27	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.02	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.006	0.76	0.0	0.04	27.65	0.01	2.025	31.90	0.05	5.6	94.4	0.0	-0.43	1.88	0.88	0.77	—	29722	2202	22	588	0	0	0	logfile
✔	7JGG	22326	2023-02-17	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.25	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.44	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile

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