Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S1N	10081	2023-04-25	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.59	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.76	0.0	0.04	16.36	0.00	2.138	16.34	0.00	4.6	95.3	0.0	-0.83	3.65	0.83	0.73	—	19726	2399	11	50	3	0	0	logfile
✔	6HE4	0209	2023-04-22	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	18.70	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.03	0.0	0.05	14.57	0.01	1.807	30.94	0.00	8.2	91.1	0.7	-1.51	2.38	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	7NK2	12429	2023-04-28	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.005	0.80	0.0	0.04	13.93	0.01	1.842	25.56	0.00	9.2	90.8	0.0	-1.77	4.62	0.74	0.69	—	28776	1794	6	23	0	0	13868	logfile
✔	6LHW	0901	2023-04-22	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7NJ7	12375	2023-04-28	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.004	0.66	0.0	0.04	13.68	0.00	1.834	21.16	0.06	5.5	94.5	0.0	-0.86	2.33	0.82	0.64	—	28818	1797	6	23	0	0	13868	logfile
✔	7A96	11686	2023-04-29	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	6HZ9	0315	2023-04-24	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	7SYJ	25530	2023-04-29	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	15.07	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.68	0.0	0.04	16.13	0.00	1.961	18.87	0.02	8.2	91.8	0.0	-1.69	1.32	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7TW2	26148	2023-04-22	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.68	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.70	0.0	0.04	13.78	0.00	2.110	14.59	0.00	3.2	96.8	0.0	1.34	1.65	0.67	0.76	—	12838	1619	4	0	2	0	0	logfile
✔	5Z1F	6875	2023-04-20	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.77	0.0	0.04	11.46	0.01	2.252	13.30	0.00	6.1	93.9	0.0	0.30	1.40	0.59	0.76	—	8480	1202	2	0	0	0	0	logfile
✔	3J03	5138	2023-04-21	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.8	0.003	0.82	0.0	0.04	14.05	0.01	2.286	21.54	0.00	3.1	96.9	0.0	-0.66	1.46	0.82	0.68	—	58640	7856	16	0	0	0	0	logfile
✔	6W4o	21535	2023-04-28	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.75	0.0	0.05	13.01	0.00	2.134	21.61	0.00	2.4	97.4	0.2	0.49	1.35	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	6QD2	4517	2023-04-26	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✘	6TF9	10491	2023-04-23	2019-11-13	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7oTQ	13065	2023-04-28	2021-06-10	4.8	5.78	4.82	5.0	0.004	0.76	0.0	0.05	24.91	0.01	2.055	6.93	1.26	4.1	95.5	0.4	-1.44	0.84	0.78	—	5.0	0.004	0.65	0.0	0.04	24.82	0.00	2.009	13.46	0.00	3.3	96.5	0.2	0.66	1.85	0.85	0.79	—	29140	1214	11	298	0	0	13365	logfile
✔	7oU2	13073	2023-04-21	2021-06-11	4.8	4.23	—	2.6	0.013	1.80	4.0	0.12	14.07	0.01	2.465	5.22	0.09	1.3	98.7	0.0	1.53	0.85	0.64	—	2.3	0.005	0.87	0.0	0.05	14.06	0.01	2.144	31.11	0.00	3.6	96.4	0.0	-0.34	1.67	0.89	0.72	—	10798	1371	4	0	2	0	0	logfile
✔	7JGJ	22328	2023-04-22	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.75	0.0	0.04	13.51	0.00	2.045	26.33	0.07	7.2	92.7	0.1	-2.02	1.26	0.84	0.49	—	13324	1707	3	0	0	0	0	logfile
✔	6DJP	7939	2023-04-20	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7TT7	26113	2023-04-22	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.58	0.0	0.04	11.88	0.00	1.846	9.10	0.00	3.3	96.7	0.0	-0.18	1.58	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile

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