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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oU2 | 13073 | 2023-12-09 | 2021-06-11 | 4.8 | 4.23 | — | 2.6 | 0.013 | 1.80 | 4.0 | 0.12 | 14.07 | 0.01 | 2.465 | 5.22 | 0.09 | 1.3 | 98.7 | 0.0 | 1.53 | 0.85 | 0.64 | — | 2.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.06 | 0.01 | 2.144 | 31.11 | 0.00 | 3.6 | 96.4 | 0.0 | -0.34 | 1.67 | 0.89 | 0.72 | — | 10798 | 1371 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2023-12-08 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 5.8 | 0.003 | 0.82 | 0.0 | 0.04 | 14.05 | 0.01 | 2.286 | 21.54 | 0.00 | 3.1 | 96.9 | 0.0 | -0.66 | 1.46 | 0.82 | 0.68 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GF7 | 29980 | 2023-12-07 | 2023-03-07 | 4.8 | 3.61 | 4.18 | 4.4 | 0.003 | 0.68 | 0.0 | 0.06 | 10.15 | 0.00 | 1.681 | 53.15 | 0.00 | 10.2 | 89.8 | 0.0 | -4.11 | 0.33 | 0.53 | — | 4.4 | 0.006 | 1.12 | 0.0 | 0.06 | 14.43 | 0.00 | 2.409 | 17.93 | 0.00 | 14.8 | 85.2 | 0.0 | -3.89 | 2.20 | 0.33 | 0.54 | — | 3774 | 540 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2023-12-08 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 2.100 | 14.75 | 0.00 | 6.5 | 93.5 | 0.0 | 0.86 | 4.22 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 8T8F | 41098 | 2023-12-10 | 2023-06-22 | 4.8 | 5.11 | 4.71 | 4.7 | 0.003 | 0.75 | 1.0 | 0.05 | 13.37 | 0.00 | 2.201 | 18.73 | 0.14 | 7.3 | 92.7 | 0.0 | -1.53 | 0.76 | 0.63 | — | 4.7 | 0.003 | 0.69 | 0.0 | 0.04 | 13.81 | 0.00 | 2.119 | 16.09 | 0.00 | 7.4 | 92.5 | 0.1 | -0.50 | 2.25 | 0.77 | 0.67 | — | 13050 | 1623 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GP3 | 34188 | 2023-12-09 | 2022-08-25 | 4.8 | 5.31 | 4.80 | 4.9 | 0.004 | 0.65 | 0.0 | 0.04 | 13.23 | 0.00 | 2.102 | 10.90 | 0.00 | 3.4 | 96.6 | 0.0 | 0.13 | 0.87 | 0.81 | — | 4.9 | 0.002 | 0.63 | 0.0 | 0.04 | 13.27 | 0.00 | 2.163 | 12.77 | 0.00 | 3.8 | 96.1 | 0.1 | -0.38 | 1.02 | 0.87 | 0.82 | — | 11494 | 1522 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TF9 | 10491 | 2023-12-10 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6DJP | 7939 | 2023-12-08 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.012 | 2.01 | 0.0 | 0.08 | 6.54 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.007 | 1.20 | 0.0 | 0.05 | 10.26 | 0.01 | 2.155 | 17.20 | 0.00 | 22.3 | 77.7 | 0.1 | -4.08 | 1.18 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2023-12-08 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 20.81 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.04 | 22.40 | 0.01 | 1.908 | 49.19 | 0.20 | 11.5 | 88.5 | 0.0 | -2.34 | 1.33 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2023-12-09 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✔ | 5FNA | 3241 | 2023-12-07 | 2015-11-11 | 4.8 | 4.43 | — | 4.2 | 0.013 | 1.51 | 0.0 | 0.08 | 12.32 | 0.01 | 2.219 | 36.54 | 0.00 | 6.0 | 94.0 | 0.0 | -1.83 | 0.48 | 0.71 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.04 | 14.28 | 0.01 | 2.153 | 22.99 | 0.00 | 8.4 | 90.4 | 1.2 | -0.31 | 2.61 | 0.49 | 0.75 | — | 5328 | 680 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2023-12-09 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.95 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.006 | 0.78 | 0.0 | 0.04 | 29.99 | 0.01 | 1.963 | 33.33 | 0.00 | 5.2 | 94.8 | 0.0 | 0.09 | 0.95 | 0.86 | 0.77 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 7RYP | 24744 | 2023-12-09 | 2021-08-25 | 4.8 | 5.38 | 4.84 | 6.5 | 0.015 | 1.50 | 0.0 | 0.07 | 10.94 | 0.01 | 2.098 | 4.80 | 0.00 | 6.2 | 92.1 | 1.7 | -1.44 | 0.78 | 0.73 | — | 6.5 | 0.004 | 0.72 | 0.0 | 0.04 | 13.13 | 0.01 | 2.000 | 20.19 | 0.00 | 13.3 | 86.4 | 0.3 | -1.66 | 0.97 | 0.78 | 0.73 | — | 11293 | 725 | 2 | 0 | 0 | 0 | 5599 | logfile |
✔ | 6C5V | 7344 | 2023-12-09 | 2018-01-16 | 4.8 | 4.87 | — | 4.8 | 0.013 | 1.30 | 0.0 | 0.07 | 10.27 | 0.01 | 2.307 | 0.95 | 0.43 | 2.4 | 97.3 | 0.3 | 0.06 | 0.83 | 0.78 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 12.23 | 0.00 | 2.108 | 13.09 | 0.09 | 3.7 | 96.3 | 0.0 | 0.21 | 0.95 | 0.84 | 0.81 | — | 10649 | 1353 | 9 | 0 | 14 | 0 | 0 | logfile |
✘ | 8HL3 | 34868 | 2023-12-07 | 2022-11-28 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 7TT7 | 26113 | 2023-12-10 | 2022-01-31 | 4.8 | 5.05 | — | 4.9 | 0.003 | 0.84 | 0.0 | 0.05 | 10.50 | 0.00 | 2.205 | 5.04 | 0.00 | 1.3 | 98.7 | 0.0 | 0.94 | 0.66 | 0.63 | — | 4.8 | 0.003 | 0.63 | 0.0 | 0.04 | 12.02 | 0.00 | 1.847 | 11.66 | 0.14 | 4.4 | 95.6 | 0.0 | -0.96 | 1.95 | 0.70 | 0.73 | — | 13296 | 867 | 5 | 0 | 0 | 0 | 6468 | logfile |
✔ | 5Z1F | 6875 | 2023-12-08 | 2017-12-26 | 4.8 | 4.85 | 4.58 | 4.8 | 0.006 | 0.87 | 0.0 | 0.05 | 13.13 | 0.01 | 2.213 | 25.36 | 5.04 | 9.8 | 89.2 | 1.0 | -4.90 | 0.60 | 0.76 | — | 4.8 | 0.003 | 0.77 | 0.0 | 0.04 | 11.46 | 0.01 | 2.252 | 13.30 | 0.00 | 6.1 | 93.9 | 0.0 | 0.30 | 1.40 | 0.59 | 0.76 | — | 8480 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-12-10 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2023-12-09 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.84 | 0.01 | 2.370 | 2.63 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 19.60 | 0.01 | 2.024 | 17.70 | 0.19 | 5.7 | 94.3 | 0.0 | -0.42 | 2.48 | 0.76 | 0.77 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2023-12-07 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.67 | 0.0 | 0.03 | 18.96 | 0.00 | 1.968 | 10.05 | 0.00 | 6.2 | 93.8 | 0.0 | 2.46 | 2.56 | 0.02 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |