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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GNi | 0044 | 2022-12-13 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.63 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.004 | 0.69 | 0.0 | 0.04 | 13.80 | 0.01 | 1.812 | 16.85 | 0.00 | 4.1 | 95.7 | 0.2 | 0.27 | 1.69 | 0.48 | 0.74 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2022-12-14 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.66 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.71 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 1.17 | 0.0 | 0.04 | 8.49 | 0.00 | 2.196 | 5.78 | 0.32 | 12.5 | 85.4 | 2.2 | -1.41 | 0.81 | 0.75 | 0.75 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CCR | 30340 | 2022-12-16 | 2020-06-17 | 4.9 | 6.57 | — | 4.8 | 0.007 | 0.96 | 0.0 | 0.06 | 24.75 | 0.01 | 1.593 | 7.21 | 0.11 | 4.4 | 95.6 | 0.0 | -2.64 | 0.83 | 0.67 | — | 4.8 | 0.004 | 0.66 | 0.0 | 0.04 | 27.00 | 0.00 | 2.040 | 21.55 | 0.05 | 5.2 | 94.8 | 0.0 | 0.28 | 1.49 | 0.88 | 0.76 | — | 29722 | 2202 | 22 | 588 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-12-12 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.79 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.73 | 0.0 | 0.04 | 13.13 | 0.00 | 2.198 | 24.93 | 0.00 | 3.7 | 96.3 | 0.0 | -0.25 | 1.99 | 0.82 | 0.76 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MoA | 23922 | 2022-12-12 | 2021-05-01 | 4.9 | 4.75 | — | 4.0 | 0.011 | 1.36 | 0.0 | 0.08 | 18.24 | 0.01 | 1.983 | 27.95 | 10.24 | 8.6 | 91.0 | 0.5 | -1.69 | 0.83 | 0.76 | — | 3.9 | 0.003 | 0.74 | 0.0 | 0.05 | 13.32 | 0.00 | 2.117 | 22.38 | 0.07 | 6.9 | 93.0 | 0.1 | -1.35 | 1.47 | 0.84 | 0.79 | — | 12511 | 1580 | 5 | 0 | 12 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2022-12-16 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 17.00 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.94 | 0.0 | 0.05 | 18.65 | 0.00 | 1.930 | 21.25 | 0.00 | 12.6 | 87.1 | 0.3 | -2.62 | 1.55 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2022-12-12 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 6.36 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.88 | 0.00 | 1.878 | 13.91 | 0.00 | 5.6 | 94.4 | 0.0 | -0.11 | 1.20 | 0.78 | 0.50 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 8A5Y | 15199 | 2022-12-12 | 2022-06-16 | 4.9 | 5.07 | 4.78 | 4.9 | 0.004 | 0.88 | 4.0 | 0.05 | 13.25 | 0.00 | 1.998 | 18.62 | 0.05 | 3.9 | 95.8 | 0.4 | 0.86 | 0.85 | 0.76 | — | 4.9 | 0.003 | 0.69 | 0.0 | 0.04 | 13.59 | 0.00 | 1.832 | 16.25 | 0.02 | 4.5 | 95.3 | 0.2 | 0.54 | 0.68 | 0.86 | 0.78 | — | 57866 | 7213 | 18 | 0 | 3 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2022-12-11 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.6 | 0.003 | 0.54 | 0.0 | 0.03 | 12.79 | 0.00 | 1.898 | 99.07 | 0.00 | 5.9 | 94.1 | 0.0 | 0.89 | 1.75 | 0.67 | 0.71 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✘ | 6VY2 | 21456 | 2022-12-18 | 2020-02-25 | 4.86 | 6.05 | — | 5.2 | 0.006 | 0.91 | 0.0 | 0.07 | 14.28 | 0.00 | 2.056 | 18.44 | 4.96 | 5.7 | 93.8 | 0.5 | -2.41 | 0.82 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 2442 | 66 | 0 | 180 | 0 | 0 | logfile |
✔ | 7MDM | 23775 | 2022-12-16 | 2021-04-05 | 4.86 | 5.09 | — | 5.0 | 0.005 | 1.19 | 0.0 | 0.07 | 15.37 | 0.01 | 2.261 | 9.38 | 0.03 | 7.9 | 92.1 | 0.0 | -3.53 | 0.82 | 0.77 | — | 4.9 | 0.003 | 0.83 | 0.0 | 0.05 | 14.44 | 0.01 | 2.047 | 26.73 | 0.00 | 8.2 | 91.8 | 0.0 | -1.86 | 2.40 | 0.83 | 0.79 | — | 31986 | 4051 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6S1N | 10081 | 2022-12-14 | 2019-06-19 | 4.86 | 4.98 | — | 4.8 | 0.009 | 1.13 | 2.0 | 0.06 | 17.87 | 0.01 | 1.929 | 10.39 | 0.83 | 6.3 | 93.4 | 0.4 | -3.47 | 0.73 | 0.53 | — | 4.8 | 0.003 | 0.77 | 0.0 | 0.04 | 16.31 | 0.01 | 2.155 | 17.16 | 0.00 | 5.0 | 94.9 | 0.0 | -1.04 | 2.76 | 0.83 | 0.73 | — | 19726 | 2399 | 11 | 50 | 3 | 0 | 0 | logfile |
✔ | 6HE4 | 0209 | 2022-12-12 | 2018-08-20 | 4.85 | 4.88 | — | 4.8 | 0.036 | 3.64 | 111.0 | 0.21 | 18.70 | 0.03 | 1.953 | 1.87 | 3.66 | 6.4 | 89.5 | 4.1 | -2.84 | 0.55 | 0.56 | — | 4.8 | 0.005 | 1.10 | 0.0 | 0.05 | 14.37 | 0.01 | 1.831 | 31.29 | 0.00 | 7.8 | 91.5 | 0.7 | -1.56 | 2.37 | 0.59 | 0.77 | — | 12684 | 1602 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2022-12-13 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.037 | 44.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2022-12-16 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 13.86 | 0.01 | 1.819 | 23.86 | 0.00 | 7.6 | 92.4 | 0.0 | -1.71 | 4.62 | 0.74 | 0.68 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7NJ7 | 12375 | 2022-12-16 | 2021-02-16 | 4.82 | 5.23 | — | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 13.69 | 0.01 | 1.907 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -0.72 | 0.74 | 0.46 | — | 4.9 | 0.003 | 0.65 | 0.0 | 0.04 | 13.53 | 0.00 | 1.815 | 20.11 | 0.00 | 6.1 | 93.9 | 0.0 | -0.94 | 2.35 | 0.82 | 0.65 | — | 28818 | 1797 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7FDB | 31539 | 2022-12-13 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.65 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.86 | 1.0 | 0.05 | 13.79 | 0.01 | 1.984 | 28.58 | 0.01 | 7.4 | 92.5 | 0.0 | -1.72 | 2.25 | 0.77 | 0.68 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YZY | 14399 | 2022-12-20 | 2022-02-21 | 4.8 | 8.15 | — | 7.7 | 0.015 | 1.65 | 21.0 | 0.11 | 17.86 | 0.01 | 1.138 | 43.89 | 12.41 | 9.9 | 88.0 | 2.2 | -3.95 | 0.60 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20364 | 2514 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o24 | 12698 | 2022-12-12 | 2021-03-30 | 4.8 | 4.54 | 4.80 | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.15 | 0.00 | 2.084 | 14.51 | 1.38 | 3.2 | 96.6 | 0.2 | 0.00 | 0.76 | 0.80 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.76 | 0.00 | 2.146 | 13.39 | 0.11 | 4.3 | 95.5 | 0.2 | -0.07 | 0.97 | 0.76 | 0.80 | — | 9318 | 1090 | 5 | 46 | 0 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2022-12-14 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.66 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.89 | 0.00 | 2.134 | 15.92 | 0.00 | 9.5 | 90.3 | 0.1 | -1.43 | 3.42 | 0.75 | 0.53 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |