Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GNi	0044	2022-12-13	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.004	0.69	0.0	0.04	13.80	0.01	1.812	16.85	0.00	4.1	95.7	0.2	0.27	1.69	0.48	0.74	—	12937	1632	6	0	4	0	0	logfile
✔	5J8V	8073	2022-12-14	2016-04-08	4.9	4.81	—	4.7	0.024	2.66	214.0	0.16	10.17	0.01	1.145	73.71	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	1.17	0.0	0.04	8.49	0.00	2.196	5.78	0.32	12.5	85.4	2.2	-1.41	0.81	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	7CCR	30340	2022-12-16	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.21	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.004	0.66	0.0	0.04	27.00	0.00	2.040	21.55	0.05	5.2	94.8	0.0	0.28	1.49	0.88	0.76	—	29722	2202	22	588	0	0	0	logfile
✔	3iZK	5247	2022-12-12	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.73	0.0	0.04	13.13	0.00	2.198	24.93	0.00	3.7	96.3	0.0	-0.25	1.99	0.82	0.76	—	58448	7856	16	0	0	0	0	logfile
✔	7MoA	23922	2022-12-12	2021-05-01	4.9	4.75	—	4.0	0.011	1.36	0.0	0.08	18.24	0.01	1.983	27.95	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.74	0.0	0.05	13.32	0.00	2.117	22.38	0.07	6.9	93.0	0.1	-1.35	1.47	0.84	0.79	—	12511	1580	5	0	12	0	0	logfile
✔	6ZQF	11362	2022-12-16	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.005	0.94	0.0	0.05	18.65	0.00	1.930	21.25	0.00	12.6	87.1	0.3	-2.62	1.55	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✔	7RSi	24672	2022-12-12	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.002	0.56	0.0	0.04	12.88	0.00	1.878	13.91	0.00	5.6	94.4	0.0	-0.11	1.20	0.78	0.50	—	10886	686	2	0	2	0	5400	logfile
✔	8A5Y	15199	2022-12-12	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.62	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.69	0.0	0.04	13.59	0.00	1.832	16.25	0.02	4.5	95.3	0.2	0.54	0.68	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✘	6VY2	21456	2022-12-18	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✔	7MDM	23775	2022-12-16	2021-04-05	4.86	5.09	—	5.0	0.005	1.19	0.0	0.07	15.37	0.01	2.261	9.38	0.03	7.9	92.1	0.0	-3.53	0.82	0.77	—	4.9	0.003	0.83	0.0	0.05	14.44	0.01	2.047	26.73	0.00	8.2	91.8	0.0	-1.86	2.40	0.83	0.79	—	31986	4051	12	0	6	0	0	logfile
✔	6S1N	10081	2022-12-14	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	10.39	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.77	0.0	0.04	16.31	0.01	2.155	17.16	0.00	5.0	94.9	0.0	-1.04	2.76	0.83	0.73	—	19726	2399	11	50	3	0	0	logfile
✔	6HE4	0209	2022-12-12	2018-08-20	4.85	4.88	—	4.8	0.036	3.64	111.0	0.21	18.70	0.03	1.953	1.87	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.10	0.0	0.05	14.37	0.01	1.831	31.29	0.00	7.8	91.5	0.7	-1.56	2.37	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6LHW	0901	2022-12-13	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.037	44.10	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7NK2	12429	2022-12-16	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.005	0.76	0.0	0.04	13.86	0.01	1.819	23.86	0.00	7.6	92.4	0.0	-1.71	4.62	0.74	0.68	—	28776	1794	6	23	0	0	13868	logfile
✔	7NJ7	12375	2022-12-16	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.003	0.65	0.0	0.04	13.53	0.00	1.815	20.11	0.00	6.1	93.9	0.0	-0.94	2.35	0.82	0.65	—	28818	1797	6	23	0	0	13868	logfile
✔	7FDB	31539	2022-12-13	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.65	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.86	1.0	0.05	13.79	0.01	1.984	28.58	0.01	7.4	92.5	0.0	-1.72	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✘	7YZY	14399	2022-12-20	2022-02-21	4.8	8.15	—	7.7	0.015	1.65	21.0	0.11	17.86	0.01	1.138	43.89	12.41	9.9	88.0	2.2	-3.95	0.60	0.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20364	2514	9	0	0	0	0	logfile
✔	7o24	12698	2022-12-12	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.15	0.00	2.084	14.51	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.003	0.61	0.0	0.04	16.76	0.00	2.146	13.39	0.11	4.3	95.5	0.2	-0.07	0.97	0.76	0.80	—	9318	1090	5	46	0	0	0	logfile
✔	6YRG	10889	2022-12-14	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.72	0.0	0.04	12.89	0.00	2.134	15.92	0.00	9.5	90.3	0.1	-1.43	3.42	0.75	0.53	—	21992	2736	4	0	0	0	0	logfile

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