Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYP	24744	2023-02-20	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.5	0.004	0.73	0.0	0.04	13.01	0.01	1.941	20.01	0.00	12.7	87.0	0.3	-1.66	1.00	0.78	0.73	—	11293	725	2	0	0	0	5599	logfile
✔	7oU2	13073	2023-02-19	2021-06-11	4.8	4.23	—	2.6	0.013	1.80	4.0	0.12	14.07	0.01	2.465	5.22	0.09	1.3	98.7	0.0	1.53	0.85	0.64	—	2.3	0.005	0.87	0.0	0.05	14.06	0.01	2.144	31.11	0.00	3.6	96.4	0.0	-0.34	1.67	0.89	0.72	—	10798	1371	4	0	2	0	0	logfile
✔	6MZJ	9303	2023-02-20	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.005	0.81	0.0	0.05	7.10	0.00	2.172	7.29	0.00	10.1	89.8	0.1	-1.41	2.19	0.77	0.65	—	12653	2088	52	0	149	0	0	logfile
✘	6FQ8	4299	2023-02-20	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.40	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11913	744	10	294	0	0	0	logfile
✔	6W4o	21535	2023-02-26	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.77	0.0	0.05	12.85	0.00	2.113	20.94	0.00	2.5	97.4	0.2	0.60	1.60	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	5TTP	8467	2023-02-17	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	7N9Y	24264	2023-02-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.45	0.00	2.547	7.13	0.00	19.3	80.3	0.4	-4.00	2.62	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6DJP	7939	2023-02-18	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.008	1.21	0.0	0.05	9.04	0.01	2.147	20.90	0.00	24.7	74.9	0.4	-4.58	1.22	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	5M6S	3451	2023-02-16	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	7TT7	26113	2023-02-20	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.58	0.0	0.04	11.88	0.00	1.846	9.10	0.00	3.3	96.7	0.0	-0.18	1.58	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	6C5V	7344	2023-02-19	2018-01-16	4.8	4.87	—	4.8	0.013	1.30	0.0	0.07	9.98	0.01	2.307	0.95	0.43	2.4	97.3	0.3	0.06	0.83	0.78	—	4.8	0.003	0.70	0.0	0.04	12.26	0.00	2.113	13.84	0.00	4.3	95.7	0.0	0.23	0.95	0.84	0.81	—	10649	1353	9	0	14	0	0	logfile
✔	7JGJ	22328	2023-02-20	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.004	0.79	0.0	0.04	13.68	0.00	2.102	35.31	0.00	8.7	91.2	0.1	-2.32	1.26	0.85	0.50	—	13324	1707	3	0	0	0	0	logfile
✔	7NBX	12262	2023-02-24	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.004	0.64	0.0	0.04	14.15	0.00	1.865	13.21	0.00	9.7	90.3	0.0	-2.01	0.71	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	7oTQ	13065	2023-02-26	2021-06-10	4.8	5.78	4.82	5.0	0.004	0.76	0.0	0.05	24.91	0.01	2.055	6.93	1.26	4.1	95.5	0.4	-1.44	0.84	0.78	—	5.0	0.004	0.65	0.0	0.04	24.82	0.00	2.009	13.46	0.00	3.3	96.5	0.2	0.66	1.85	0.85	0.79	—	29140	1214	11	298	0	0	13365	logfile
✔	7TKo	25976	2023-02-23	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.017	1.29	0.0	0.00	7.15	0.01	2.058	23.50	0.00	14.0	85.6	0.3	-1.39	0.90	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	6Uo9	20823	2023-02-19	2019-10-14	4.8	5.30	—	4.9	0.006	1.36	1.0	0.07	13.42	0.01	2.227	6.41	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.8	0.004	0.77	0.0	0.05	13.08	0.00	2.120	15.89	0.00	8.1	91.9	0.0	-0.47	1.06	0.81	0.82	—	9915	1365	9	0	14	0	0	logfile
✔	7TW2	26148	2023-02-20	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.9	0.003	0.69	0.0	0.04	13.73	0.00	2.159	13.63	0.07	2.9	97.1	0.0	1.36	1.64	0.67	0.76	—	12838	1619	4	0	2	0	0	logfile
✔	6HD5	0201	2023-02-19	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.78	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	5VCA	8659	2023-02-21	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile

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