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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KTP | 23025 | 2023-12-09 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.15 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.67 | 0.0 | 0.04 | 12.92 | 0.00 | 1.209 | 15.22 | 0.00 | 5.3 | 94.7 | 0.0 | -0.82 | 2.61 | 0.75 | 0.77 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 6C5V | 7344 | 2023-12-09 | 2018-01-16 | 4.8 | 4.87 | — | 4.8 | 0.013 | 1.30 | 0.0 | 0.07 | 10.27 | 0.01 | 2.307 | 0.95 | 0.43 | 2.4 | 97.3 | 0.3 | 0.06 | 0.83 | 0.78 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 12.23 | 0.00 | 2.108 | 13.09 | 0.09 | 3.7 | 96.3 | 0.0 | 0.21 | 0.95 | 0.84 | 0.81 | — | 10649 | 1353 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2023-12-08 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 2.100 | 14.75 | 0.00 | 6.5 | 93.5 | 0.0 | 0.86 | 4.22 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 8T8F | 41098 | 2023-12-10 | 2023-06-22 | 4.8 | 5.11 | 4.71 | 4.7 | 0.003 | 0.75 | 1.0 | 0.05 | 13.37 | 0.00 | 2.201 | 18.73 | 0.14 | 7.3 | 92.7 | 0.0 | -1.53 | 0.76 | 0.63 | — | 4.7 | 0.003 | 0.69 | 0.0 | 0.04 | 13.81 | 0.00 | 2.119 | 16.09 | 0.00 | 7.4 | 92.5 | 0.1 | -0.50 | 2.25 | 0.77 | 0.67 | — | 13050 | 1623 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MZJ | 9303 | 2023-12-09 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.015 | 1.59 | 0.0 | 0.09 | 9.30 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | 4.5 | 0.007 | 1.17 | 0.0 | 0.05 | 10.77 | 0.01 | 2.138 | 11.08 | 0.00 | 13.5 | 86.3 | 0.2 | -2.25 | 2.21 | 0.77 | 0.66 | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✔ | 8AFM | 15402 | 2023-12-08 | 2022-07-18 | 4.8 | 3.13 | 4.72 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 15.27 | 0.00 | 2.153 | 18.43 | 0.25 | 8.2 | 91.8 | 0.0 | -3.48 | 0.46 | 0.51 | — | 3.0 | 0.003 | 0.76 | 0.0 | 0.04 | 15.73 | 0.00 | 2.128 | 14.33 | 0.00 | 4.6 | 95.4 | 0.0 | -1.03 | 2.15 | 0.48 | 0.55 | — | 7842 | 1010 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2023-12-09 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.95 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.006 | 0.78 | 0.0 | 0.04 | 29.99 | 0.01 | 1.963 | 33.33 | 0.00 | 5.2 | 94.8 | 0.0 | 0.09 | 0.95 | 0.86 | 0.77 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✘ | 8HL3 | 34868 | 2023-12-07 | 2022-11-28 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6XMG | 22258 | 2023-12-08 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 20.81 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.04 | 22.40 | 0.01 | 1.908 | 49.19 | 0.20 | 11.5 | 88.5 | 0.0 | -2.34 | 1.33 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 7F46 | 31444 | 2023-12-08 | 2021-06-17 | 4.79 | 5.15 | — | 3.3 | 0.006 | 0.84 | 0.0 | 0.05 | 13.32 | 0.01 | 2.218 | 12.18 | 0.00 | 8.9 | 91.1 | 0.0 | -2.90 | 0.77 | 0.60 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 12.62 | 0.01 | 2.201 | 12.02 | 0.00 | 5.6 | 94.4 | 0.0 | -1.62 | 1.17 | 0.78 | 0.59 | — | 6564 | 842 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2023-12-10 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 17.68 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.07 | 0.00 | 1.916 | 18.91 | 0.00 | 11.0 | 89.0 | 0.0 | -1.50 | 1.66 | 0.59 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 8CTJ | 26992 | 2023-12-07 | 2022-05-15 | 4.74 | 4.27 | 4.78 | 5.3 | 0.005 | 0.92 | 0.0 | 0.05 | 14.67 | 0.01 | 2.233 | 6.13 | 0.00 | 4.6 | 95.4 | 0.0 | -0.72 | 0.43 | 0.48 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 14.32 | 0.00 | 2.167 | 15.39 | 0.00 | 4.6 | 95.4 | 0.0 | 0.02 | 1.83 | 0.50 | 0.59 | — | 3312 | 401 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R0C | 14221 | 2023-12-08 | 2022-02-01 | 4.73 | 5.24 | 5.06 | 5.1 | 0.013 | 0.91 | 1.0 | 0.05 | 13.19 | 0.01 | 2.100 | 26.54 | 0.14 | 6.1 | 93.9 | 0.0 | -0.89 | 0.64 | 0.73 | — | 5.1 | 0.003 | 0.70 | 0.0 | 0.05 | 13.11 | 0.01 | 2.170 | 20.88 | 0.00 | 5.4 | 94.6 | 0.0 | -0.57 | 0.53 | 0.64 | 0.73 | — | 6816 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Y92 | 10732 | 2023-12-10 | 2020-03-06 | 4.73 | 5.03 | — | 4.9 | 0.006 | 0.77 | 0.0 | 0.06 | 14.34 | 0.00 | 2.265 | 7.43 | 0.77 | 3.7 | 96.3 | 0.0 | -0.68 | 0.59 | 0.71 | — | 4.9 | 0.003 | 0.76 | 0.0 | 0.04 | 13.23 | 0.00 | 2.165 | 13.86 | 0.19 | 6.9 | 93.1 | 0.0 | -1.76 | 0.74 | 0.62 | 0.78 | — | 9497 | 1210 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 8S90 | 40233 | 2023-12-10 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 7AiB | 11794 | 2023-12-10 | 2020-09-26 | 4.7 | 4.97 | 4.76 | 4.3 | 0.014 | 1.84 | 3.0 | 0.10 | 19.51 | 0.01 | 2.329 | 2.90 | 1.14 | 6.0 | 94.0 | 0.0 | -3.64 | 0.88 | 0.72 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 17.97 | 0.00 | 2.104 | 22.37 | 0.00 | 4.1 | 95.9 | 0.0 | -0.32 | 2.08 | 0.92 | 0.82 | — | 13839 | 1591 | 7 | 60 | 2 | 0 | 0 | logfile |
✔ | 7CF9 | 30343 | 2023-12-09 | 2020-06-24 | 4.7 | 4.24 | 5.21 | 4.0 | 0.006 | 1.24 | 0.0 | 0.06 | 16.01 | 0.01 | 1.538 | 5.47 | 1.67 | 6.2 | 93.7 | 0.1 | -4.86 | 0.79 | 0.68 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.72 | 0.00 | 1.936 | 15.11 | 0.04 | 5.5 | 94.5 | 0.0 | -1.92 | 1.78 | 0.81 | 0.74 | — | 116104 | 14416 | 12 | 0 | 1820 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2023-12-09 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 14.25 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.003 | 0.86 | 0.0 | 0.05 | 14.48 | 0.01 | 2.097 | 29.34 | 0.00 | 14.3 | 85.5 | 0.2 | -2.95 | 0.86 | 0.84 | 0.62 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 8oDV | 16819 | 2023-12-08 | 2023-03-09 | 4.7 | 4.86 | 4.41 | 4.7 | 0.007 | 1.10 | 0.0 | 0.05 | 14.06 | 0.01 | 2.192 | 25.76 | 0.00 | 4.6 | 95.4 | 0.0 | -4.04 | 0.71 | 0.79 | — | 4.7 | 0.003 | 0.80 | 0.0 | 0.04 | 14.02 | 0.00 | 2.151 | 16.03 | 0.00 | 3.7 | 96.3 | 0.0 | 0.11 | 1.47 | 0.71 | 0.79 | — | 8233 | 1022 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-12-09 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |