Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QP6	14113	2023-09-28	2022-01-03	4.7	4.90	4.71	4.6	0.011	1.50	51.0	0.10	16.89	0.02	2.016	10.57	5.29	4.4	95.3	0.3	-1.97	0.76	0.71	—	4.6	0.004	0.77	0.0	0.04	15.83	0.01	1.936	21.90	0.02	6.5	93.4	0.0	-0.76	0.99	0.80	0.82	—	109900	9873	57	1814	4	0	0	logfile
✔	6i52	4410	2023-09-27	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.80	0.0	0.04	17.74	0.00	2.238	19.96	0.00	10.4	88.9	0.7	-2.46	3.53	0.75	0.57	—	3856	432	4	20	0	0	0	logfile
✔	3J6E	5895	2023-09-30	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.25	0.01	1.539	5.62	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.72	0.0	0.04	14.09	0.00	1.877	18.82	0.02	2.6	97.4	0.0	0.35	2.15	0.69	0.79	—	60984	7686	54	0	36	72	0	logfile
✔	6CEB	7463	2023-09-30	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	9.64	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.005	0.81	0.0	0.05	11.21	0.00	2.127	25.98	0.00	12.8	87.2	0.0	-2.59	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	7ZKB	14761	2023-09-29	2022-04-12	4.7	4.80	4.47	4.7	0.013	1.10	2.0	0.06	14.01	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.71	0.0	0.04	14.48	0.00	2.134	14.95	0.00	6.4	93.6	0.0	-0.02	0.55	0.56	0.76	—	9043	1158	1	0	1	0	0	logfile
✔	7QE5	13930	2023-09-30	2021-12-01	4.7	4.93	4.36	4.7	0.013	2.06	17.0	0.11	14.37	0.02	2.209	6.87	1.14	4.8	95.0	0.3	-2.59	0.65	0.66	—	4.8	0.003	0.67	0.0	0.04	13.57	0.01	1.998	12.96	0.00	4.6	95.2	0.1	0.18	1.12	0.65	0.68	—	11652	740	2	0	0	0	5932	logfile
✔	8HC6	34653	2023-09-28	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.62	0.0	0.04	13.41	0.00	2.175	16.76	0.00	6.9	93.1	0.0	-1.56	0.77	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	7JGF	22325	2023-09-27	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6KS8	0760	2023-09-30	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6AYG	7020	2023-09-30	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.59	0.0	0.04	10.50	0.00	2.121	3.95	0.00	2.8	97.2	0.0	2.30	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	8FEJ	29029	2023-09-30	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.56	0.0	0.04	12.24	0.00	2.204	9.64	0.00	6.1	93.7	0.2	-0.44	1.31	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8FEL	29032	2023-09-29	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	6KS7	0759	2023-09-30	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✘	6BNP	7116	2023-09-29	2017-11-17	4.6	4.61	3.78	4.4	0.015	2.10	24.0	0.11	16.18	0.02	1.814	0.55	1.80	8.3	90.3	1.3	-3.94	0.48	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56792	7160	22	0	16	0	0	logfile
✔	8B40	15835	2023-09-30	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.65	0.0	0.04	10.91	0.00	2.129	15.12	0.00	5.6	94.4	0.0	-0.80	1.02	0.76	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	6SH5	10194	2023-09-30	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.82	0.0	0.04	5.28	0.00	2.265	5.49	0.00	16.4	83.6	0.0	-2.90	1.64	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	7PiM	13442	2023-09-30	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7JLX	22383	2023-09-27	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✘	7DGR	30674	2023-09-27	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7K1V	22630	2023-09-28	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile

• ← previous
• Page 4 of 206
• next →