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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RYP | 24744 | 2023-02-20 | 2021-08-25 | 4.8 | 5.38 | 4.84 | 6.5 | 0.015 | 1.50 | 0.0 | 0.07 | 10.94 | 0.01 | 2.098 | 4.80 | 0.00 | 6.2 | 92.1 | 1.7 | -1.44 | 0.78 | 0.73 | — | 6.5 | 0.004 | 0.73 | 0.0 | 0.04 | 13.01 | 0.01 | 1.941 | 20.01 | 0.00 | 12.7 | 87.0 | 0.3 | -1.66 | 1.00 | 0.78 | 0.73 | — | 11293 | 725 | 2 | 0 | 0 | 0 | 5599 | logfile |
✔ | 7oU2 | 13073 | 2023-02-19 | 2021-06-11 | 4.8 | 4.23 | — | 2.6 | 0.013 | 1.80 | 4.0 | 0.12 | 14.07 | 0.01 | 2.465 | 5.22 | 0.09 | 1.3 | 98.7 | 0.0 | 1.53 | 0.85 | 0.64 | — | 2.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.06 | 0.01 | 2.144 | 31.11 | 0.00 | 3.6 | 96.4 | 0.0 | -0.34 | 1.67 | 0.89 | 0.72 | — | 10798 | 1371 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6MZJ | 9303 | 2023-02-20 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.50 | 0.0 | 0.08 | 8.01 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | 4.5 | 0.005 | 0.81 | 0.0 | 0.05 | 7.10 | 0.00 | 2.172 | 7.29 | 0.00 | 10.1 | 89.8 | 0.1 | -1.41 | 2.19 | 0.77 | 0.65 | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✘ | 6FQ8 | 4299 | 2023-02-20 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.99 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2023-02-26 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.77 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.05 | 12.85 | 0.00 | 2.113 | 20.94 | 0.00 | 2.5 | 97.4 | 0.2 | 0.60 | 1.60 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2023-02-24 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 13.87 | 0.01 | 2.001 | 29.12 | 0.03 | 7.7 | 92.3 | 0.0 | -1.80 | 2.25 | 0.77 | 0.68 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TTP | 8467 | 2023-02-17 | 2016-11-04 | 4.8 | 4.88 | — | 4.5 | 0.006 | 1.36 | 0.0 | 0.06 | 11.70 | 0.01 | 2.038 | 24.92 | 0.00 | 14.1 | 85.2 | 0.7 | -5.87 | 0.61 | 0.60 | — | 4.6 | 0.002 | 0.77 | 0.0 | 0.04 | 5.16 | 0.00 | 2.264 | 6.32 | 0.00 | 13.8 | 85.9 | 0.4 | 0.24 | 1.81 | 0.66 | 0.69 | — | 5616 | 1138 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-02-18 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.45 | 0.00 | 2.547 | 7.13 | 0.00 | 19.3 | 80.3 | 0.4 | -4.00 | 2.62 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2023-02-18 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.011 | 2.00 | 0.0 | 0.08 | 5.34 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.008 | 1.21 | 0.0 | 0.05 | 9.04 | 0.01 | 2.147 | 20.90 | 0.00 | 24.7 | 74.9 | 0.4 | -4.58 | 1.22 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2023-02-16 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.63 | 0.0 | 0.03 | 18.81 | 0.00 | 1.995 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.64 | 2.46 | 0.03 | 0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 7TT7 | 26113 | 2023-02-20 | 2022-01-31 | 4.8 | 5.05 | — | 4.9 | 0.003 | 0.84 | 0.0 | 0.05 | 10.50 | 0.00 | 2.205 | 5.04 | 0.00 | 1.3 | 98.7 | 0.0 | 0.94 | 0.66 | 0.63 | — | 4.8 | 0.002 | 0.58 | 0.0 | 0.04 | 11.88 | 0.00 | 1.846 | 9.10 | 0.00 | 3.3 | 96.7 | 0.0 | -0.18 | 1.58 | 0.70 | 0.73 | — | 13296 | 867 | 5 | 0 | 0 | 0 | 6468 | logfile |
✔ | 6C5V | 7344 | 2023-02-19 | 2018-01-16 | 4.8 | 4.87 | — | 4.8 | 0.013 | 1.30 | 0.0 | 0.07 | 9.98 | 0.01 | 2.307 | 0.95 | 0.43 | 2.4 | 97.3 | 0.3 | 0.06 | 0.83 | 0.78 | — | 4.8 | 0.003 | 0.70 | 0.0 | 0.04 | 12.26 | 0.00 | 2.113 | 13.84 | 0.00 | 4.3 | 95.7 | 0.0 | 0.23 | 0.95 | 0.84 | 0.81 | — | 10649 | 1353 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 7JGJ | 22328 | 2023-02-20 | 2020-07-19 | 4.8 | 7.06 | — | 6.5 | 0.013 | 2.22 | 17.0 | 0.31 | 17.49 | 0.01 | 1.656 | 7.23 | 12.68 | 7.2 | 91.6 | 1.2 | -2.09 | 0.88 | 0.68 | — | 6.5 | 0.004 | 0.79 | 0.0 | 0.04 | 13.68 | 0.00 | 2.102 | 35.31 | 0.00 | 8.7 | 91.2 | 0.1 | -2.32 | 1.26 | 0.85 | 0.50 | — | 13324 | 1707 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NBX | 12262 | 2023-02-24 | 2021-01-28 | 4.8 | 5.30 | 4.72 | 4.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.90 | 0.01 | 1.950 | 12.59 | 0.00 | 12.3 | 87.6 | 0.1 | -4.49 | 0.76 | 0.82 | — | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 14.15 | 0.00 | 1.865 | 13.21 | 0.00 | 9.7 | 90.3 | 0.0 | -2.01 | 0.71 | 0.76 | 0.81 | — | 22637 | 1475 | 5 | 0 | 0 | 0 | 11129 | logfile |
✔ | 7oTQ | 13065 | 2023-02-26 | 2021-06-10 | 4.8 | 5.78 | 4.82 | 5.0 | 0.004 | 0.76 | 0.0 | 0.05 | 24.91 | 0.01 | 2.055 | 6.93 | 1.26 | 4.1 | 95.5 | 0.4 | -1.44 | 0.84 | 0.78 | — | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 24.82 | 0.00 | 2.009 | 13.46 | 0.00 | 3.3 | 96.5 | 0.2 | 0.66 | 1.85 | 0.85 | 0.79 | — | 29140 | 1214 | 11 | 298 | 0 | 0 | 13365 | logfile |
✔ | 7TKo | 25976 | 2023-02-23 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.017 | 1.29 | 0.0 | 0.00 | 7.15 | 0.01 | 2.058 | 23.50 | 0.00 | 14.0 | 85.6 | 0.3 | -1.39 | 0.90 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Uo9 | 20823 | 2023-02-19 | 2019-10-14 | 4.8 | 5.30 | — | 4.9 | 0.006 | 1.36 | 1.0 | 0.07 | 13.42 | 0.01 | 2.227 | 6.41 | 1.07 | 8.0 | 92.0 | 0.0 | -3.80 | 0.81 | 0.80 | — | 4.8 | 0.004 | 0.77 | 0.0 | 0.05 | 13.08 | 0.00 | 2.120 | 15.89 | 0.00 | 8.1 | 91.9 | 0.0 | -0.47 | 1.06 | 0.81 | 0.82 | — | 9915 | 1365 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 7TW2 | 26148 | 2023-02-20 | 2022-02-06 | 4.8 | 4.73 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.67 | 0.01 | 2.177 | 9.73 | 0.07 | 2.2 | 97.8 | 0.0 | -1.27 | 0.66 | 0.72 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 13.73 | 0.00 | 2.159 | 13.63 | 0.07 | 2.9 | 97.1 | 0.0 | 1.36 | 1.64 | 0.67 | 0.76 | — | 12838 | 1619 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-02-19 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.78 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VCA | 8659 | 2023-02-21 | 2017-03-31 | 4.8 | 6.04 | — | 5.9 | 0.021 | 2.64 | 50.0 | 0.15 | 5.91 | 0.01 | 1.097 | 2.19 | 0.00 | 6.9 | 90.0 | 3.1 | -4.41 | 0.73 | 0.70 | — | 5.8 | 0.004 | 0.74 | 0.0 | 0.04 | 6.04 | 0.00 | 2.096 | 8.58 | 0.00 | 15.1 | 84.8 | 0.1 | -2.22 | 2.93 | 0.76 | 0.67 | — | 16080 | 3264 | 6 | 0 | 0 | 0 | 0 | logfile |