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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PTY | 13643 | 2023-12-10 | 2021-09-27 | 4.63 | 5.10 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.76 | 0.00 | 2.199 | 25.20 | 0.00 | 10.9 | 89.1 | 0.0 | -1.41 | 0.88 | 0.76 | — | 4.5 | 0.002 | 0.63 | 0.0 | 0.04 | 13.82 | 0.00 | 2.163 | 16.37 | 0.00 | 7.9 | 92.1 | 0.0 | -0.80 | 0.39 | 0.89 | 0.77 | — | 13433 | 1715 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-12-09 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HL4 | 34869 | 2023-12-07 | 2022-11-28 | 4.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6SH5 | 10194 | 2023-12-09 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.04 | 5.28 | 0.00 | 2.265 | 5.49 | 0.00 | 16.4 | 83.6 | 0.0 | -2.90 | 1.64 | 0.82 | 0.82 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M68 | 30116 | 2023-12-10 | 2020-03-13 | 4.6 | 5.04 | — | 4.8 | 0.005 | 1.00 | 0.0 | 0.06 | 14.61 | 0.01 | 2.175 | 5.67 | 0.00 | 10.0 | 90.0 | 0.0 | -5.56 | 0.66 | 0.79 | — | 4.8 | 0.004 | 0.81 | 0.0 | 0.05 | 13.44 | 0.00 | 2.103 | 17.47 | 0.00 | 10.0 | 90.0 | 0.0 | -1.98 | 1.48 | 0.66 | 0.79 | — | 14938 | 1855 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K1V | 22630 | 2023-12-07 | 2020-09-08 | 4.6 | 4.95 | — | 4.8 | 0.008 | 1.12 | 0.0 | 0.06 | 15.77 | 0.01 | 2.159 | 13.77 | 0.40 | 11.0 | 89.0 | 0.0 | -4.04 | 0.71 | 0.71 | — | 4.8 | 0.003 | 0.72 | 0.0 | 0.04 | 13.84 | 0.00 | 2.160 | 21.48 | 0.00 | 7.3 | 92.7 | 0.0 | -1.21 | 2.35 | 0.70 | 0.75 | — | 4971 | 626 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-12-10 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.4 | 0.006 | 1.28 | 0.0 | 0.06 | 15.37 | 0.01 | 1.912 | 43.78 | 0.00 | 8.2 | 91.8 | 0.0 | -2.70 | 3.88 | 0.27 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-12-07 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S9D | 24933 | 2023-12-09 | 2021-09-20 | 4.6 | 4.40 | — | 4.1 | 0.006 | 0.89 | 0.0 | 0.05 | 11.27 | 0.00 | 2.095 | 23.20 | 0.35 | 10.7 | 89.0 | 0.3 | -0.95 | 0.61 | 0.80 | — | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 11.92 | 0.00 | 2.234 | 10.40 | 0.00 | 7.4 | 92.3 | 0.3 | -0.77 | 0.46 | 0.59 | 0.77 | — | 10462 | 1354 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RYQ | 24745 | 2023-12-07 | 2021-08-25 | 4.6 | 6.00 | 4.65 | 4.8 | 0.005 | 1.08 | 0.0 | 0.06 | 15.48 | 0.01 | 1.251 | 39.25 | 6.25 | 10.7 | 88.9 | 0.4 | -1.51 | 0.85 | 0.76 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.17 | 0.01 | 2.162 | 16.62 | 0.00 | 7.6 | 92.4 | 0.0 | -0.37 | 1.23 | 0.85 | 0.77 | — | 4332 | 527 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXT | 28662 | 2023-12-08 | 2022-10-25 | 4.6 | 4.06 | 4.52 | 7.3 | 0.026 | 2.04 | 0.0 | 0.12 | 10.97 | 0.01 | 2.014 | 14.28 | 2.03 | 5.3 | 93.9 | 0.8 | -0.66 | 0.53 | 0.45 | — | 7.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.143 | 16.84 | 0.00 | 7.6 | 92.4 | 0.0 | -0.51 | 1.22 | 0.61 | 0.62 | — | 8846 | 1062 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7BZW | 30261 | 2023-12-09 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.68 | 0.01 | 1.922 | 20.13 | 0.00 | 19.3 | 80.7 | 0.0 | -2.79 | 1.80 | 0.93 | 0.86 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CRB | 16807 | 2023-12-08 | 2023-03-08 | 4.6 | 4.12 | 4.59 | 4.0 | 0.013 | 1.98 | 2.0 | 0.10 | 14.75 | 0.02 | 2.540 | 0.58 | 1.23 | 10.1 | 88.0 | 1.9 | -2.65 | 0.72 | 0.61 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.04 | 13.32 | 0.01 | 1.974 | 20.89 | 0.00 | 14.9 | 84.5 | 0.5 | -2.77 | 1.44 | 0.73 | 0.63 | — | 8665 | 582 | 3 | 0 | 0 | 0 | 4286 | logfile |
✔ | 6SGY | 10188 | 2023-12-07 | 2019-08-05 | 4.6 | 4.79 | — | 4.6 | 0.007 | 1.35 | 0.0 | 0.06 | 15.71 | 0.01 | 2.225 | 11.45 | 0.67 | 12.8 | 87.2 | 0.0 | -4.34 | 0.72 | 0.63 | — | 6.6 | 0.003 | 0.87 | 0.0 | 0.04 | 13.43 | 0.01 | 2.101 | 11.18 | 0.00 | 9.5 | 90.5 | 0.0 | -3.08 | 3.44 | 0.78 | 0.76 | — | 5766 | 804 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XJX | 22216 | 2023-12-09 | 2020-06-24 | 4.6 | 4.25 | — | 4.1 | 0.009 | 1.20 | 0.0 | 0.06 | 12.14 | 0.01 | 1.876 | 8.13 | 0.39 | 6.4 | 93.6 | 0.0 | -3.41 | 0.67 | 0.80 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.70 | 0.00 | 2.109 | 12.92 | 0.00 | 4.4 | 95.6 | 0.0 | 1.11 | 1.94 | 0.67 | 0.80 | — | 12077 | 1462 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B40 | 15835 | 2023-12-09 | 2022-09-19 | 4.6 | 4.13 | 4.51 | 3.6 | 0.002 | 0.50 | 0.0 | 0.04 | 10.45 | 0.00 | 2.149 | 11.85 | 4.31 | 4.2 | 95.7 | 0.0 | -0.38 | 0.77 | 0.69 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 10.91 | 0.00 | 2.129 | 15.12 | 0.00 | 5.6 | 94.4 | 0.0 | -0.80 | 1.02 | 0.76 | 0.66 | — | 39466 | 4844 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PQX | 20455 | 2023-12-09 | 2019-07-10 | 4.6 | 4.84 | — | 4.7 | 0.006 | 0.99 | 0.0 | 0.06 | 23.41 | 0.01 | 2.222 | 15.96 | 2.35 | 5.2 | 94.1 | 0.6 | -3.41 | 0.78 | 0.79 | — | 4.7 | 0.004 | 0.70 | 0.0 | 0.04 | 22.86 | 0.01 | 1.958 | 18.62 | 0.00 | 7.2 | 92.8 | 0.0 | -1.73 | 1.28 | 0.77 | 0.77 | — | 10116 | 960 | 10 | 120 | 4 | 0 | 0 | logfile |
✔ | 7PiM | 13442 | 2023-12-09 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 6.0 | 0.002 | 0.46 | 0.0 | 0.03 | 12.16 | 0.00 | 1.951 | 68.77 | 0.00 | 4.3 | 95.7 | 0.0 | 0.20 | 1.10 | 0.83 | 0.77 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 6RKV | 4912 | 2023-12-10 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | 4.5 | 0.003 | 0.80 | 0.0 | 0.05 | 15.47 | 0.01 | 1.100 | 12.32 | 0.00 | 7.5 | 92.5 | 0.0 | -1.30 | 0.91 | 0.87 | 0.79 | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 7NXD | 12637 | 2023-12-10 | 2021-03-18 | 4.6 | 8.22 | 6.02 | 6.0 | 0.013 | 1.51 | 0.0 | 0.11 | 9.83 | 0.03 | 1.831 | 64.77 | 1.03 | 4.0 | 96.0 | 0.1 | -1.02 | 0.80 | 0.44 | — | 6.0 | 0.003 | 0.77 | 0.0 | 0.05 | 11.15 | 0.00 | 1.919 | 22.90 | 0.07 | 6.0 | 94.0 | 0.0 | -0.78 | 1.18 | 0.89 | 0.73 | — | 12805 | 1595 | 18 | 0 | 48 | 0 | 0 | logfile |