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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5W9L | 8787 | 2024-03-21 | 2017-06-23 | 4.8 | 4.95 | 4.82 | 4.8 | 0.014 | 1.71 | 0.0 | 0.08 | 10.52 | 0.01 | 1.520 | 4.48 | 0.06 | 4.5 | 94.7 | 0.9 | 0.78 | 0.75 | 0.76 | — | 4.8 | 0.006 | 0.85 | 0.0 | 0.04 | 12.97 | 0.01 | 2.012 | 22.26 | 0.00 | 8.3 | 91.4 | 0.2 | -1.25 | 1.72 | 0.76 | 0.80 | — | 31118 | 4020 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o7o | 12751 | 2024-03-24 | 2021-04-13 | 4.8 | 5.79 | — | 6.6 | 0.011 | 1.24 | 5.0 | 0.06 | 16.35 | 0.02 | 1.564 | 17.48 | 0.43 | 17.4 | 82.1 | 0.5 | -5.42 | 0.81 | 0.69 | — | 6.6 | 0.003 | 0.86 | 0.0 | 0.05 | 14.55 | 0.01 | 2.094 | 27.68 | 0.02 | 14.3 | 85.6 | 0.1 | -3.63 | 1.33 | 0.81 | 0.71 | — | 42642 | 5376 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 7KTP | 23025 | 2024-03-15 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.15 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 1.215 | 13.63 | 0.00 | 4.7 | 95.3 | 0.0 | -0.82 | 2.22 | 0.75 | 0.76 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7SZ4 | 25560 | 2024-03-25 | 2021-11-25 | 4.8 | 7.97 | 4.67 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.41 | 0.01 | 2.097 | 25.58 | 0.02 | 18.8 | 80.5 | 0.7 | -3.20 | 0.89 | 0.78 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 14.66 | 0.01 | 2.095 | 35.03 | 0.00 | 20.3 | 79.0 | 0.7 | -3.12 | 0.50 | 0.89 | 0.79 | — | 48242 | 5973 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R92 | 4766 | 2024-03-24 | 2019-04-02 | 4.8 | 6.24 | — | 5.4 | 0.009 | 1.11 | 6.0 | 0.09 | 23.88 | 0.01 | 2.054 | 4.33 | 0.36 | 5.0 | 94.7 | 0.4 | -1.02 | 0.87 | 0.72 | — | 5.4 | 0.005 | 0.74 | 0.0 | 0.06 | 24.44 | 0.00 | 1.876 | 22.26 | 0.00 | 8.5 | 91.4 | 0.1 | -2.09 | 1.37 | 0.88 | 0.74 | — | 40519 | 1974 | 12 | 290 | 0 | 0 | 19019 | logfile |
✔ | 5G5L | 3439 | 2024-03-23 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.05 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 13.39 | 0.00 | 2.050 | 18.55 | 0.00 | 4.1 | 95.9 | 0.1 | 0.41 | 3.23 | 0.86 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2024-03-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2024-03-18 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.8 | 0.003 | 0.73 | 0.0 | 0.04 | 12.90 | 0.00 | 2.145 | 14.98 | 0.00 | 10.1 | 89.7 | 0.1 | -1.36 | 3.44 | 0.75 | 0.53 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 6E88 | 9004 | 2024-03-24 | 2018-07-27 | 4.8 | 4.77 | — | 4.7 | 0.003 | 0.75 | 0.0 | 0.05 | 11.59 | 0.01 | 2.258 | 7.24 | 0.27 | 4.5 | 95.5 | 0.0 | -4.16 | 0.72 | 0.71 | — | 4.7 | 0.005 | 0.99 | 0.0 | 0.05 | 14.05 | 0.01 | 1.927 | 26.45 | 0.00 | 5.5 | 94.5 | 0.0 | -2.58 | 1.72 | 0.73 | 0.72 | — | 40908 | 5160 | 24 | 6 | 6 | 0 | 0 | logfile |
✔ | 7CTF | 30463 | 2024-03-16 | 2020-08-18 | 4.8 | 4.92 | — | 4.8 | 0.009 | 1.36 | 0.0 | 0.06 | 19.00 | 0.01 | 2.264 | 6.48 | 8.84 | 6.9 | 93.1 | 0.1 | -4.50 | 0.77 | 0.73 | — | 4.7 | 0.003 | 0.78 | 0.0 | 0.04 | 14.56 | 0.00 | 2.090 | 17.27 | 0.12 | 6.3 | 93.7 | 0.0 | -0.83 | 3.95 | 0.79 | 0.78 | — | 14504 | 1775 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2024-03-11 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5NCo | 3617 | 2024-03-20 | 2017-03-06 | 4.8 | 5.02 | — | 4.8 | 0.007 | 1.14 | 0.0 | 0.05 | 23.35 | 0.00 | 1.168 | 8.54 | 9.43 | 3.1 | 96.8 | 0.1 | -2.95 | 0.70 | 0.76 | — | 4.8 | 0.004 | 0.70 | 0.0 | 0.04 | 22.85 | 0.00 | 1.213 | 26.45 | 0.03 | 5.2 | 94.7 | 0.1 | -0.07 | 1.18 | 0.71 | 0.84 | — | 101694 | 4738 | 43 | 3112 | 46 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2024-03-14 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.84 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 7TKo | 25976 | 2024-03-18 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.00 | 5.80 | 0.00 | 2.139 | 12.52 | 0.00 | 10.1 | 89.6 | 0.2 | -0.46 | 0.84 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2024-03-11 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 16.29 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.002 | 0.66 | 0.0 | 0.04 | 14.49 | 0.00 | 2.142 | 11.86 | 0.00 | 5.4 | 94.6 | 0.0 | 1.32 | 4.20 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✘ | 5UJZ | 8561 | 2024-03-22 | 2017-01-19 | 4.8 | 5.22 | — | 5.1 | 0.010 | 1.28 | 0.0 | 0.06 | 12.10 | 0.01 | 2.072 | 3.55 | 0.16 | 7.6 | 92.3 | 0.1 | -3.77 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✔ | 7o24 | 12698 | 2024-03-14 | 2021-03-30 | 4.8 | 4.54 | 4.80 | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.35 | 0.00 | 2.084 | 14.17 | 1.38 | 3.2 | 96.6 | 0.2 | 0.00 | 0.76 | 0.80 | — | 4.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.89 | 0.00 | 2.152 | 12.11 | 0.23 | 4.2 | 95.6 | 0.2 | 0.02 | 0.96 | 0.76 | 0.80 | — | 9318 | 1090 | 5 | 46 | 0 | 0 | 0 | logfile |
✘ | 5TAT | 8384 | 2024-03-14 | 2016-09-10 | 4.8 | 5.01 | 5.79 | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 9.86 | 0.01 | 1.373 | 4.75 | 0.35 | 9.4 | 90.5 | 0.1 | -4.89 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2024-03-11 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 5.6 | 0.003 | 0.78 | 0.0 | 0.04 | 13.62 | 0.00 | 2.191 | 20.58 | 0.00 | 2.9 | 97.1 | 0.0 | -0.06 | 2.41 | 0.84 | 0.70 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |