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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 2XEA | 1730 | 2022-05-13 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 162.14 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 6Jo5 | 9853 | 2022-05-18 | 2019-03-20 | 2.9 | 2.97 | — | 2.9 | 0.028 | 2.73 | 0.0 | 0.09 | 18.14 | 0.02 | 1.209 | 12.17 | 0.43 | 4.0 | 96.0 | 0.1 | -2.29 | 0.79 | 0.84 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48476 | 4170 | 40 | 0 | 313 | 0 | 0 | logfile |
✘ | 6N06 | 9311 | 2022-05-15 | 2018-11-06 | 3.4 | 3.49 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 8.24 | 0.01 | 2.241 | 7.24 | 0.04 | 1.9 | 98.1 | 0.0 | -4.01 | 0.76 | 0.86 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28197 | 3915 | 39 | 0 | 0 | 0 | 0 | logfile |
✘ | 6MZV | 9308 | 2022-05-16 | 2018-11-05 | 3.4 | 3.57 | — | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 8.48 | 0.01 | 2.343 | 7.32 | 0.34 | 3.4 | 96.6 | 0.0 | -4.51 | 0.79 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2022-05-13 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.96 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Mi8 | 9126 | 2022-05-12 | 2018-09-19 | 4.3 | 4.20 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.07 | 11.58 | 0.01 | 1.262 | 6.40 | 0.13 | 8.8 | 91.2 | 0.0 | -5.13 | 0.56 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2022-05-17 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.14 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 6EF0 | 9042 | 2022-05-15 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 6C0W | 7326 | 2022-05-13 | 2018-01-02 | 4.0 | 4.10 | 3.87 | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 27.80 | 0.01 | 2.107 | 4.30 | 0.00 | 4.9 | 95.1 | 0.0 | -4.19 | 0.80 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13122 | 925 | 11 | 278 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2022-05-15 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6DUZ | 8913 | 2022-05-15 | 2018-06-22 | 3.6 | 3.88 | — | 3.8 | 0.006 | 0.97 | 0.0 | 0.05 | 11.01 | 0.01 | 1.677 | 4.87 | 4.35 | 3.2 | 96.8 | 0.0 | -4.32 | 0.76 | 0.82 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72744 | 9072 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-05-15 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-05-13 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RX4 | 10049 | 2022-05-12 | 2019-06-07 | 3.3 | 3.78 | 3.21 | 3.8 | 0.007 | 1.12 | 0.0 | 0.06 | 11.76 | 0.01 | 1.205 | 5.46 | 0.14 | 4.5 | 95.5 | 0.0 | -4.07 | 0.67 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7347 | 884 | 8 | 0 | 31 | 7 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-05-14 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.010 | 0.96 | 0.0 | 0.05 | 15.28 | 0.03 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 6QEL | 4537 | 2022-05-13 | 2019-01-08 | 3.9 | 4.04 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.05 | 11.57 | 0.01 | 1.292 | 4.73 | 0.46 | 11.6 | 88.4 | 0.0 | -4.53 | 0.79 | 0.76 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 6Ui9 | 20783 | 2022-05-16 | 2019-09-30 | 3.1 | 3.28 | — | 3.3 | 0.012 | 1.23 | 0.0 | 0.07 | 15.82 | 0.01 | 1.023 | 6.72 | 0.27 | 6.7 | 93.1 | 0.2 | -3.91 | 0.67 | 0.67 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31951 | 4084 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6RUo | 10007 | 2022-05-18 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.11 | 0.01 | 2.170 | 8.01 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✘ | 6FBS | 4225 | 2022-05-13 | 2017-12-19 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 5XJY | 6724 | 2022-05-13 | 2017-05-04 | 4.1 | 4.17 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.07 | 12.18 | 0.01 | 2.200 | 9.29 | 1.27 | 14.1 | 85.8 | 0.2 | -6.01 | 0.64 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12785 | 1901 | 1 | 0 | 12 | 0 | 0 | logfile |