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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6LMK | 0917 | 2022-12-18 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.19 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LiD | 0904 | 2022-12-18 | 2019-12-10 | 2.7 | 2.74 | — | 2.7 | 0.007 | 0.99 | 0.0 | 0.06 | 14.33 | 0.01 | 1.890 | 3.70 | 1.96 | 4.8 | 95.1 | 0.1 | -4.84 | 0.62 | 0.74 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17964 | 2162 | 22 | 0 | 26 | 246 | 0 | logfile |
✘ | 6WBX | 21600 | 2022-12-18 | 2020-03-27 | 3.5 | 3.82 | 3.55 | 3.7 | 0.012 | 1.07 | 0.0 | 0.06 | 13.49 | 0.01 | 2.190 | 4.07 | 0.11 | 7.9 | 92.0 | 0.1 | -5.51 | 0.77 | 0.87 | 3.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9170 | 1264 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6WTi | 21897 | 2022-12-18 | 2020-05-02 | 2.38 | 2.42 | — | 2.5 | 0.010 | 1.20 | 5.0 | 0.07 | 19.47 | 0.01 | 1.179 | 9.26 | 11.79 | 4.6 | 95.3 | 0.1 | -3.48 | 0.60 | 0.74 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9980 | 1207 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 7B5N | 12041 | 2022-12-18 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.51 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✘ | 6UD3 | 20731 | 2022-12-18 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.018 | 1.60 | 0.0 | 0.11 | 11.84 | 0.01 | 2.293 | 7.52 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 6UQE | 20845 | 2022-12-22 | 2019-10-18 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48402 | 6140 | 28 | 0 | 33 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✔ | 6U5B | 20643 | 2022-12-19 | 2019-08-27 | 3.5 | 3.46 | — | 3.4 | 0.005 | 0.95 | 0.0 | 0.06 | 10.09 | 0.01 | 2.206 | 5.76 | 0.17 | 8.9 | 91.1 | 0.0 | -5.11 | 0.63 | 0.81 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103392 | 13608 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YMX | 10847 | 2022-12-22 | 2020-04-10 | 3.17 | 3.73 | 3.27 | 3.6 | 0.010 | 1.11 | 0.0 | 0.06 | 15.99 | 0.01 | 1.201 | 7.02 | 0.39 | 6.1 | 93.9 | 0.1 | -5.84 | 0.76 | 0.85 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47034 | 5759 | 47 | 0 | 38 | 0 | 0 | logfile |
✘ | 6LHU | 0899 | 2022-12-18 | 2019-12-10 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23169 | 1518 | 2 | 0 | 0 | 0 | 11483 | logfile |
✘ | 7C2K | 30275 | 2022-12-18 | 2020-05-07 | 2.93 | 3.24 | 3.00 | 3.1 | 0.007 | 0.67 | 0.0 | 0.04 | 13.79 | 0.00 | 2.256 | 7.24 | 0.00 | 4.5 | 95.5 | 0.0 | -2.91 | 0.78 | 0.89 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10692 | 1256 | 7 | 31 | 3 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2022-12-18 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SL5 | 10236 | 2022-12-22 | 2019-08-18 | 2.84 | 2.97 | 2.83 | 3.0 | 0.026 | 2.96 | 9.0 | 0.14 | 20.93 | 0.02 | 1.187 | 20.83 | 0.73 | 7.3 | 92.0 | 0.7 | -3.12 | 0.71 | 0.77 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43789 | 3744 | 36 | 0 | 292 | 0 | 0 | logfile |
✘ | 6LHS | 0896 | 2022-12-18 | 2019-12-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1456 | 2 | 0 | 0 | 0 | 11313 | logfile |
✘ | 6YMY | 10848 | 2022-12-18 | 2020-04-10 | 3.41 | 3.81 | 3.50 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 16.55 | 0.01 | 0.424 | 7.47 | 0.27 | 8.9 | 91.0 | 0.1 | -6.00 | 0.68 | 0.82 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✔ | 6W21 | 21521 | 2022-12-22 | 2020-03-04 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48327 | 6123 | 27 | 0 | 36 | 0 | 0 | logfile |
✘ | 7BNo | 12231 | 2022-12-18 | 2021-01-22 | 4.2 | 4.76 | 4.36 | 4.4 | 0.007 | 0.99 | 0.0 | 0.06 | 14.04 | 0.02 | 2.216 | 13.19 | 0.72 | 9.3 | 90.7 | 0.0 | -3.77 | 0.88 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25480 | 3197 | 7 | 0 | 33 | 0 | 0 | logfile |
✘ | 6XZR | 10666 | 2022-12-19 | 2020-02-05 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6TRA | 10557 | 2022-12-18 | 2019-12-18 | 2.85 | 3.02 | — | 3.0 | 0.006 | 0.96 | 0.0 | 0.04 | 18.82 | 0.02 | 1.225 | 8.56 | 0.05 | 4.7 | 95.3 | 0.0 | -3.41 | 0.73 | 0.83 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25197 | 2283 | 33 | 0 | 134 | 217 | 0 | logfile |