Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7SPi	24771	2022-07-03	2021-11-02	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	5M6S	3451	2022-07-02	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	4Ci0	2513	2022-07-05	2013-12-05	3.36	3.43	—	3.4	0.014	1.93	24.0	1.74	23.74	0.03	1.915	119.49	39.11	3.4	96.5	0.1	1.78	0.71	0.70	0.31	3.4	0.014	2.75	0.0	0.54	18.68	0.00	2.023	19.28	0.66	4.3	95.7	0.0	-0.62	2.13	0.81	0.87	1.47	83472	10716	72	0	108	0	0	logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5ND1	3619	2022-07-04	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.60	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.006	0.90	0.0	0.04	18.16	0.01	2.087	15.73	0.57	9.8	89.7	0.5	-2.03	1.59	0.48	0.83	1.04	14963	1977	2	0	0	0	0	logfile
✔	3J9K	2870	2022-07-05	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.65	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.78	0.0	0.04	13.93	0.00	2.137	16.74	0.00	5.1	94.8	0.2	-1.17	1.16	0.70	0.70	—	126512	10352	48	0	8304	0	0	logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✔	5A9Z	6396	2022-07-10	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.55	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.006	1.00	0.0	0.05	19.23	0.01	0.000	40.34	0.22	21.3	76.3	2.3	-4.29	2.90	0.87	0.81	—	150547	6671	58	4527	131	0	0	logfile
✘	6J8J	9782	2022-07-03	2019-01-19	3.2	3.36	—	3.3	0.010	1.50	0.0	0.10	21.93	0.01	1.349	71.09	28.80	2.5	96.2	1.3	2.79	0.59	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11764	1433	6	0	12	0	0	logfile
✘	6J8i	9782	2022-07-03	2019-01-19	3.2	3.36	—	3.3	0.010	1.50	0.0	0.10	21.92	0.01	1.349	71.43	28.73	2.5	96.2	1.3	2.78	0.59	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11764	1433	6	0	12	0	0	logfile
✔	5J8V	8073	2022-07-04	2016-04-08	4.9	4.81	—	4.7	0.024	2.66	214.0	0.16	10.17	0.01	1.145	73.71	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	1.16	0.0	0.04	8.22	0.00	2.233	4.75	0.32	11.9	86.0	2.1	-1.61	0.83	0.74	0.72	—	73616	13812	4	0	0	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✔	7BP0	30138	2022-07-07	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	4.2	0.004	1.06	0.0	0.05	15.03	0.01	2.103	20.38	0.00	13.0	86.1	0.9	-2.72	1.43	0.60	0.68	—	41388	5244	12	0	0	0	0	logfile
✔	3J5P	5778	2022-07-04	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.28	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.88	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✔	3J9L	2871	2022-07-03	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.044	3.04	47.0	0.12	19.31	0.02	1.806	99.15	3.02	41.1	57.3	1.6	-7.66	2.86	0.73	0.82	—	112951	8688	31	0	8320	0	0	logfile
✔	6J8H	9781	2022-07-03	2019-01-19	3.2	3.35	—	3.3	0.010	1.53	1.0	0.10	21.67	0.01	1.886	58.69	27.17	2.0	96.6	1.3	2.87	0.60	0.78	1.53	3.3	0.003	0.69	0.0	0.04	18.17	0.00	2.193	7.99	0.31	4.2	95.6	0.2	0.65	0.79	0.61	0.83	1.83	11763	1433	6	0	12	0	0	logfile
✔	6J8G	9781	2022-07-03	2019-01-19	3.2	3.35	—	3.3	0.010	1.53	1.0	0.10	21.68	0.01	1.886	58.65	27.17	2.0	96.6	1.3	2.85	0.60	0.78	1.54	3.3	0.006	0.77	0.0	0.05	18.32	0.00	2.149	8.58	0.70	3.9	95.8	0.3	0.44	0.79	0.61	0.83	1.95	11763	1433	6	0	12	0	0	logfile
✘	5LMU	4080	2022-07-03	2016-08-01	4.0	4.12	4.00	4.0	0.007	1.43	43.0	0.12	21.31	0.01	1.241	21.19	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55195	2550	29	1612	82	0	0	logfile
✔	4UQ8	2676	2022-07-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✘	5A7U	3079	2022-07-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile

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