Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LYP	30017	2022-12-13	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.006	0.81	0.0	0.05	14.74	0.00	2.216	13.19	0.73	9.7	90.3	0.0	-3.22	1.22	0.54	0.74	2.31	15169	2009	7	0	0	0	0	logfile
✔	6W5R	21545	2022-12-13	2020-03-13	3.6	3.75	—	3.7	0.015	2.09	7.0	0.18	15.36	0.01	2.053	4.99	3.86	6.7	92.6	0.7	-3.31	0.61	0.75	2.23	3.7	0.004	0.72	0.0	0.05	16.35	0.00	2.193	8.67	0.48	6.7	93.1	0.2	-0.22	0.53	0.63	0.77	1.63	9629	1194	6	0	20	0	0	logfile
✔	6WiV	21685	2022-12-12	2020-04-10	3.3	3.32	—	3.3	0.006	0.78	0.0	0.05	14.07	0.00	2.042	21.89	0.08	3.1	96.9	0.0	-1.94	0.79	0.81	2.67	3.4	0.002	0.56	0.0	0.04	15.36	0.00	2.151	8.24	0.34	2.8	97.2	0.0	1.18	1.97	0.80	0.83	2.28	11206	1352	4	0	17	0	0	logfile
✔	6W6o	21560	2022-12-12	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.38	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.5	0.003	0.81	0.0	0.04	19.24	0.00	2.227	10.76	0.32	6.5	93.5	0.0	-0.25	2.08	0.63	0.82	1.98	9180	1044	12	0	12	0	0	logfile
✔	7BX8	30236	2022-12-13	2020-04-17	3.6	3.87	3.75	3.8	0.008	1.31	0.0	0.08	13.92	0.01	2.299	10.31	1.37	11.6	88.4	0.1	-4.54	0.66	0.80	1.62	3.8	0.003	0.76	0.0	0.04	15.25	0.00	2.142	11.88	0.37	6.6	93.4	0.0	-0.95	1.92	0.67	0.82	1.83	16304	2232	4	0	0	0	0	logfile
✔	6V9Y	21130	2022-12-13	2019-12-16	3.6	4.03	3.78	3.9	0.009	1.18	0.0	0.06	14.21	0.01	2.262	6.61	2.13	5.6	94.4	0.0	-5.18	0.74	0.82	1.38	3.9	0.003	0.84	0.0	0.04	16.25	0.00	2.176	14.57	0.80	5.6	94.4	0.0	-0.02	0.75	0.72	0.81	1.05	17716	2248	4	0	0	0	0	logfile
✔	6YRK	10890	2022-12-16	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.68	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.004	0.73	0.0	0.04	14.00	0.00	2.076	22.57	0.00	6.3	93.6	0.1	-1.24	1.89	0.85	0.69	—	15058	1937	2	0	0	0	0	logfile
✔	6VXo	21446	2022-12-11	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.43	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.79	0.0	0.05	18.35	0.00	2.122	10.12	0.74	10.3	89.7	0.0	-0.42	0.71	0.61	0.81	0.66	8048	904	8	0	12	0	0	logfile
✔	6VX3	21428	2022-12-11	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.48	0.00	1.829	26.22	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.68	0.0	0.04	18.07	0.00	2.261	9.19	1.13	3.5	96.5	0.0	-1.82	1.74	0.59	0.79	1.90	7780	900	8	0	8	0	0	logfile
✔	6VWX	21425	2022-12-11	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.59	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.003	0.67	0.0	0.04	18.65	0.00	2.135	7.76	0.38	7.0	93.0	0.0	-1.01	0.64	0.65	0.84	1.99	7782	900	8	0	10	0	0	logfile
✔	6UVS	20915	2022-12-13	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.80	0.01	1.873	2.08	0.00	11.8	88.2	0.0	1.29	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	6WPW	21866	2022-12-12	2020-04-28	3.1	3.57	—	3.5	0.007	0.95	0.0	0.06	10.18	0.01	1.735	6.45	0.00	5.9	94.1	0.0	-4.62	0.57	0.80	4.45	3.5	0.002	0.57	0.0	0.04	14.39	0.00	2.164	8.48	0.31	4.5	95.5	0.0	0.20	0.55	0.57	0.80	3.23	9262	1176	6	0	0	0	0	logfile
✔	6W5T	21547	2022-12-13	2020-03-13	3.7	3.75	—	3.7	0.007	1.12	2.0	0.18	17.05	0.01	2.054	48.53	5.60	8.0	91.5	0.5	-2.80	0.61	0.76	1.74	3.7	0.003	0.77	0.0	0.05	17.44	0.00	2.183	10.96	0.20	6.9	93.0	0.1	0.02	1.32	0.63	0.78	1.72	9505	1175	6	0	21	0	0	logfile
✔	6SMH	10235	2022-12-20	2019-08-21	4.3	4.36	—	4.3	0.009	1.33	2.0	0.07	17.19	0.04	0.292	54.51	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.007	0.93	0.0	0.05	14.32	0.01	1.992	24.35	0.15	12.6	87.0	0.4	-2.46	2.72	0.69	0.81	—	39744	5025	16	0	0	0	0	logfile
✔	6VXN	21445	2022-12-13	2020-02-22	2.96	3.62	—	3.4	0.013	1.07	0.0	0.06	15.68	0.01	2.332	5.68	0.00	1.6	98.4	0.0	-3.41	0.75	0.82	3.10	3.3	0.003	0.70	0.0	0.04	15.99	0.00	2.228	7.05	1.15	2.9	97.1	0.0	0.92	1.32	0.70	0.82	2.84	14385	1862	12	0	7	0	0	logfile
✔	6W5V	21549	2022-12-13	2020-03-13	4.0	4.11	—	4.0	0.008	1.35	4.0	0.18	17.76	0.01	1.979	62.59	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.003	0.84	0.0	0.05	17.36	0.01	2.046	14.12	0.96	5.6	94.4	0.0	-0.47	0.87	0.63	0.77	—	10586	1307	9	0	24	0	0	logfile
✔	6V0C	20993	2022-12-20	2019-11-18	3.46	3.52	—	3.5	0.007	0.94	0.0	0.06	10.08	0.01	2.280	3.84	0.00	2.7	97.3	0.0	-3.30	0.79	0.82	3.14	3.5	0.003	0.64	0.0	0.05	14.39	0.00	2.197	10.77	0.32	3.8	96.2	0.0	-1.69	1.51	0.79	0.84	2.84	37920	4992	6	0	0	0	0	logfile
✔	6YYT	11007	2022-12-12	2020-05-06	2.9	3.28	3.09	3.2	0.003	0.47	0.0	0.04	14.59	0.00	2.258	2.82	0.36	2.9	97.1	0.0	-0.98	0.80	0.82	2.65	3.2	0.003	0.57	0.0	0.04	15.84	0.00	2.145	8.42	2.71	2.7	97.3	0.0	1.17	0.44	0.80	0.87	2.83	11375	1298	9	54	2	0	0	logfile
✔	6KSW	0775	2022-12-12	2019-08-26	3.6	3.70	—	3.7	0.008	1.08	0.0	0.06	11.37	0.01	2.245	6.68	0.25	5.4	94.6	0.0	-5.90	0.59	0.80	2.51	3.7	0.003	0.80	0.0	0.04	15.53	0.00	2.107	15.25	1.02	4.5	95.5	0.0	0.19	1.39	0.60	0.80	1.32	11661	1539	3	0	0	0	0	logfile
✔	6LRS	0960	2022-12-16	2020-01-16	3.37	2.99	—	3.4	0.006	1.04	0.0	0.06	10.05	0.01	2.260	10.82	0.38	6.7	93.3	0.0	-5.21	0.63	0.74	2.94	3.4	0.004	0.72	0.0	0.05	15.16	0.00	2.115	20.36	0.80	5.8	94.2	0.0	-1.93	0.73	0.66	0.79	2.57	30156	3832	12	0	0	0	0	logfile

• Page 1 of 443
• next →