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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6LYP | 30017 | 2022-12-13 | 2020-02-15 | 3.3 | 3.12 | 3.20 | 3.5 | 0.011 | 1.35 | 0.0 | 0.08 | 11.79 | 0.01 | 2.148 | 8.25 | 1.40 | 9.8 | 90.2 | 0.0 | -6.19 | 0.50 | 0.70 | 2.83 | 3.5 | 0.006 | 0.81 | 0.0 | 0.05 | 14.74 | 0.00 | 2.216 | 13.19 | 0.73 | 9.7 | 90.3 | 0.0 | -3.22 | 1.22 | 0.54 | 0.74 | 2.31 | 15169 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W5R | 21545 | 2022-12-13 | 2020-03-13 | 3.6 | 3.75 | — | 3.7 | 0.015 | 2.09 | 7.0 | 0.18 | 15.36 | 0.01 | 2.053 | 4.99 | 3.86 | 6.7 | 92.6 | 0.7 | -3.31 | 0.61 | 0.75 | 2.23 | 3.7 | 0.004 | 0.72 | 0.0 | 0.05 | 16.35 | 0.00 | 2.193 | 8.67 | 0.48 | 6.7 | 93.1 | 0.2 | -0.22 | 0.53 | 0.63 | 0.77 | 1.63 | 9629 | 1194 | 6 | 0 | 20 | 0 | 0 | logfile |
✔ | 6WiV | 21685 | 2022-12-12 | 2020-04-10 | 3.3 | 3.32 | — | 3.3 | 0.006 | 0.78 | 0.0 | 0.05 | 14.07 | 0.00 | 2.042 | 21.89 | 0.08 | 3.1 | 96.9 | 0.0 | -1.94 | 0.79 | 0.81 | 2.67 | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 15.36 | 0.00 | 2.151 | 8.24 | 0.34 | 2.8 | 97.2 | 0.0 | 1.18 | 1.97 | 0.80 | 0.83 | 2.28 | 11206 | 1352 | 4 | 0 | 17 | 0 | 0 | logfile |
✔ | 6W6o | 21560 | 2022-12-12 | 2020-03-17 | 3.2 | 3.40 | — | 3.4 | 0.011 | 1.34 | 0.0 | 0.06 | 24.38 | 0.00 | 2.078 | 53.37 | 16.39 | 15.2 | 83.3 | 1.6 | -4.85 | 0.63 | 0.75 | 1.80 | 3.5 | 0.003 | 0.81 | 0.0 | 0.04 | 19.24 | 0.00 | 2.227 | 10.76 | 0.32 | 6.5 | 93.5 | 0.0 | -0.25 | 2.08 | 0.63 | 0.82 | 1.98 | 9180 | 1044 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7BX8 | 30236 | 2022-12-13 | 2020-04-17 | 3.6 | 3.87 | 3.75 | 3.8 | 0.008 | 1.31 | 0.0 | 0.08 | 13.92 | 0.01 | 2.299 | 10.31 | 1.37 | 11.6 | 88.4 | 0.1 | -4.54 | 0.66 | 0.80 | 1.62 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.25 | 0.00 | 2.142 | 11.88 | 0.37 | 6.6 | 93.4 | 0.0 | -0.95 | 1.92 | 0.67 | 0.82 | 1.83 | 16304 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V9Y | 21130 | 2022-12-13 | 2019-12-16 | 3.6 | 4.03 | 3.78 | 3.9 | 0.009 | 1.18 | 0.0 | 0.06 | 14.21 | 0.01 | 2.262 | 6.61 | 2.13 | 5.6 | 94.4 | 0.0 | -5.18 | 0.74 | 0.82 | 1.38 | 3.9 | 0.003 | 0.84 | 0.0 | 0.04 | 16.25 | 0.00 | 2.176 | 14.57 | 0.80 | 5.6 | 94.4 | 0.0 | -0.02 | 0.75 | 0.72 | 0.81 | 1.05 | 17716 | 2248 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRK | 10890 | 2022-12-16 | 2020-04-20 | 4.1 | 4.59 | — | 4.0 | 0.014 | 1.85 | 13.0 | 0.12 | 18.90 | 0.01 | 2.473 | 6.68 | 12.77 | 6.4 | 93.2 | 0.5 | -2.49 | 0.68 | 0.44 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 14.00 | 0.00 | 2.076 | 22.57 | 0.00 | 6.3 | 93.6 | 0.1 | -1.24 | 1.89 | 0.85 | 0.69 | — | 15058 | 1937 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VXo | 21446 | 2022-12-11 | 2020-02-22 | 3.5 | 3.81 | — | 3.8 | 0.012 | 1.40 | 0.0 | 0.05 | 24.43 | 0.00 | 2.125 | 14.64 | 21.57 | 12.2 | 87.4 | 0.4 | -3.90 | 0.63 | 0.83 | 0.88 | 3.8 | 0.003 | 0.79 | 0.0 | 0.05 | 18.35 | 0.00 | 2.122 | 10.12 | 0.74 | 10.3 | 89.7 | 0.0 | -0.42 | 0.71 | 0.61 | 0.81 | 0.66 | 8048 | 904 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6VX3 | 21428 | 2022-12-11 | 2020-02-21 | 3.7 | 3.91 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.05 | 19.48 | 0.00 | 1.829 | 26.22 | 4.02 | 7.4 | 92.6 | 0.0 | -4.21 | 0.60 | 0.81 | 2.86 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 18.07 | 0.00 | 2.261 | 9.19 | 1.13 | 3.5 | 96.5 | 0.0 | -1.82 | 1.74 | 0.59 | 0.79 | 1.90 | 7780 | 900 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6VWX | 21425 | 2022-12-11 | 2020-02-20 | 3.1 | 3.47 | — | 3.5 | 0.011 | 1.29 | 0.0 | 0.05 | 22.59 | 0.01 | 2.200 | 11.67 | 15.83 | 8.1 | 91.5 | 0.4 | -4.41 | 0.63 | 0.83 | 1.16 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 18.65 | 0.00 | 2.135 | 7.76 | 0.38 | 7.0 | 93.0 | 0.0 | -1.01 | 0.64 | 0.65 | 0.84 | 1.99 | 7782 | 900 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2022-12-13 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 9.80 | 0.01 | 1.873 | 2.08 | 0.00 | 11.8 | 88.2 | 0.0 | 1.29 | 0.87 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6WPW | 21866 | 2022-12-12 | 2020-04-28 | 3.1 | 3.57 | — | 3.5 | 0.007 | 0.95 | 0.0 | 0.06 | 10.18 | 0.01 | 1.735 | 6.45 | 0.00 | 5.9 | 94.1 | 0.0 | -4.62 | 0.57 | 0.80 | 4.45 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.39 | 0.00 | 2.164 | 8.48 | 0.31 | 4.5 | 95.5 | 0.0 | 0.20 | 0.55 | 0.57 | 0.80 | 3.23 | 9262 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W5T | 21547 | 2022-12-13 | 2020-03-13 | 3.7 | 3.75 | — | 3.7 | 0.007 | 1.12 | 2.0 | 0.18 | 17.05 | 0.01 | 2.054 | 48.53 | 5.60 | 8.0 | 91.5 | 0.5 | -2.80 | 0.61 | 0.76 | 1.74 | 3.7 | 0.003 | 0.77 | 0.0 | 0.05 | 17.44 | 0.00 | 2.183 | 10.96 | 0.20 | 6.9 | 93.0 | 0.1 | 0.02 | 1.32 | 0.63 | 0.78 | 1.72 | 9505 | 1175 | 6 | 0 | 21 | 0 | 0 | logfile |
✔ | 6SMH | 10235 | 2022-12-20 | 2019-08-21 | 4.3 | 4.36 | — | 4.3 | 0.009 | 1.33 | 2.0 | 0.07 | 17.19 | 0.04 | 0.292 | 54.51 | 14.61 | 12.0 | 85.8 | 2.2 | -4.97 | 0.68 | 0.79 | — | 4.3 | 0.007 | 0.93 | 0.0 | 0.05 | 14.32 | 0.01 | 1.992 | 24.35 | 0.15 | 12.6 | 87.0 | 0.4 | -2.46 | 2.72 | 0.69 | 0.81 | — | 39744 | 5025 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VXN | 21445 | 2022-12-13 | 2020-02-22 | 2.96 | 3.62 | — | 3.4 | 0.013 | 1.07 | 0.0 | 0.06 | 15.68 | 0.01 | 2.332 | 5.68 | 0.00 | 1.6 | 98.4 | 0.0 | -3.41 | 0.75 | 0.82 | 3.10 | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 15.99 | 0.00 | 2.228 | 7.05 | 1.15 | 2.9 | 97.1 | 0.0 | 0.92 | 1.32 | 0.70 | 0.82 | 2.84 | 14385 | 1862 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 6W5V | 21549 | 2022-12-13 | 2020-03-13 | 4.0 | 4.11 | — | 4.0 | 0.008 | 1.35 | 4.0 | 0.18 | 17.76 | 0.01 | 1.979 | 62.59 | 9.99 | 7.0 | 92.3 | 0.7 | -2.21 | 0.63 | 0.75 | — | 4.0 | 0.003 | 0.84 | 0.0 | 0.05 | 17.36 | 0.01 | 2.046 | 14.12 | 0.96 | 5.6 | 94.4 | 0.0 | -0.47 | 0.87 | 0.63 | 0.77 | — | 10586 | 1307 | 9 | 0 | 24 | 0 | 0 | logfile |
✔ | 6V0C | 20993 | 2022-12-20 | 2019-11-18 | 3.46 | 3.52 | — | 3.5 | 0.007 | 0.94 | 0.0 | 0.06 | 10.08 | 0.01 | 2.280 | 3.84 | 0.00 | 2.7 | 97.3 | 0.0 | -3.30 | 0.79 | 0.82 | 3.14 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 14.39 | 0.00 | 2.197 | 10.77 | 0.32 | 3.8 | 96.2 | 0.0 | -1.69 | 1.51 | 0.79 | 0.84 | 2.84 | 37920 | 4992 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YYT | 11007 | 2022-12-12 | 2020-05-06 | 2.9 | 3.28 | 3.09 | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 14.59 | 0.00 | 2.258 | 2.82 | 0.36 | 2.9 | 97.1 | 0.0 | -0.98 | 0.80 | 0.82 | 2.65 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.84 | 0.00 | 2.145 | 8.42 | 2.71 | 2.7 | 97.3 | 0.0 | 1.17 | 0.44 | 0.80 | 0.87 | 2.83 | 11375 | 1298 | 9 | 54 | 2 | 0 | 0 | logfile |
✔ | 6KSW | 0775 | 2022-12-12 | 2019-08-26 | 3.6 | 3.70 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 11.37 | 0.01 | 2.245 | 6.68 | 0.25 | 5.4 | 94.6 | 0.0 | -5.90 | 0.59 | 0.80 | 2.51 | 3.7 | 0.003 | 0.80 | 0.0 | 0.04 | 15.53 | 0.00 | 2.107 | 15.25 | 1.02 | 4.5 | 95.5 | 0.0 | 0.19 | 1.39 | 0.60 | 0.80 | 1.32 | 11661 | 1539 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LRS | 0960 | 2022-12-16 | 2020-01-16 | 3.37 | 2.99 | — | 3.4 | 0.006 | 1.04 | 0.0 | 0.06 | 10.05 | 0.01 | 2.260 | 10.82 | 0.38 | 6.7 | 93.3 | 0.0 | -5.21 | 0.63 | 0.74 | 2.94 | 3.4 | 0.004 | 0.72 | 0.0 | 0.05 | 15.16 | 0.00 | 2.115 | 20.36 | 0.80 | 5.8 | 94.2 | 0.0 | -1.93 | 0.73 | 0.66 | 0.79 | 2.57 | 30156 | 3832 | 12 | 0 | 0 | 0 | 0 | logfile |