Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C6T	7350	2023-04-28	2018-01-19	3.5	3.64	—	3.6	0.010	1.14	0.0	0.07	13.19	0.01	1.993	7.52	0.72	8.1	91.6	0.3	-4.12	0.74	0.81	2.49	3.6	0.003	0.64	0.0	0.04	16.34	0.00	2.026	10.97	0.47	5.9	94.0	0.1	-0.50	0.67	0.75	0.81	1.52	26915	3262	11	68	3	0	0	logfile
✔	7oo0	13003	2023-04-23	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	12.75	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.002	0.49	0.0	0.04	13.55	0.00	2.304	5.53	0.13	1.4	98.6	0.0	1.58	1.53	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	6CJQ	7482	2023-04-22	2018-02-26	3.42	3.51	—	3.5	0.009	1.36	0.0	0.06	12.07	0.01	2.306	5.41	0.60	7.0	93.0	0.0	-3.36	0.70	0.84	2.91	3.5	0.003	0.69	0.0	0.04	14.30	0.00	2.173	8.84	0.15	4.3	95.7	0.0	0.89	0.71	0.72	0.86	2.09	12768	1568	8	0	24	0	0	logfile
✔	7K4D	22665	2023-04-25	2020-09-15	3.66	4.18	—	4.3	0.010	1.22	0.0	0.06	12.05	0.01	2.205	3.98	0.38	9.1	90.9	0.0	-6.15	0.51	0.74	2.06	4.3	0.003	0.75	0.0	0.04	16.29	0.00	2.129	9.75	0.56	6.6	93.4	0.0	-1.56	0.86	0.54	0.76	1.33	19801	2448	8	0	7	0	0	logfile
✔	7WX3	32875	2023-04-20	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	0.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.003	0.63	0.0	0.04	16.88	0.00	2.057	6.23	0.11	1.6	98.4	0.0	-0.39	1.57	0.56	0.77	0.98	8472	1086	12	0	8	0	0	logfile
✔	8B8J	15914	2023-04-22	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.211	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.003	0.67	0.0	0.04	13.51	0.00	2.161	10.37	2.59	2.5	97.5	0.0	1.75	1.48	0.63	0.80	2.24	11686	1418	4	0	6	0	0	logfile
✔	8EHA	28145	2023-04-27	2022-09-14	3.7	3.76	3.69	3.7	0.005	0.62	0.0	0.04	15.06	0.00	1.996	7.24	3.77	6.4	93.6	0.0	-1.50	0.73	0.84	2.02	3.7	0.003	0.60	0.0	0.04	16.66	0.00	1.944	11.03	0.26	6.0	94.0	0.0	-0.63	0.37	0.73	0.84	1.49	26250	3190	11	64	4	0	0	logfile
✔	7F1R	31423	2023-04-20	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.28	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7oo6	13006	2023-04-23	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	11.12	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.42	0.0	0.04	13.98	0.00	2.360	8.12	0.20	1.3	98.7	0.0	2.26	1.12	0.63	0.82	2.27	14546	1827	14	0	14	0	0	logfile
✔	7K18	22621	2023-04-21	2020-09-07	3.3	3.43	—	3.4	0.006	1.09	1.0	0.05	18.25	0.01	1.936	21.56	3.41	7.9	91.8	0.3	-3.42	0.53	0.72	1.76	3.4	0.004	0.78	0.0	0.04	17.71	0.00	2.082	13.83	0.30	6.9	93.1	0.1	-0.22	0.67	0.52	0.75	1.49	9749	1195	6	0	19	0	0	logfile
✔	6Li3	0902	2023-04-20	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.003	0.65	0.0	0.04	16.65	0.00	2.150	9.72	0.33	3.8	96.2	0.0	-0.12	1.35	0.59	0.77	1.61	8289	1045	5	0	0	0	0	logfile
✔	7R76	24292	2023-04-23	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	5U6o	8511	2023-04-23	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.61	0.0	0.04	15.08	0.00	2.203	9.26	0.37	1.9	98.1	0.0	2.22	0.66	0.67	0.82	1.80	14480	1928	4	0	0	0	0	logfile
✔	7DFH	30664	2023-04-21	2020-11-08	2.97	3.14	—	3.1	0.008	0.93	0.0	0.06	13.96	0.01	2.159	5.69	0.09	3.4	96.6	0.0	-3.16	0.70	0.82	2.92	3.1	0.003	0.57	0.0	0.04	15.83	0.00	2.105	8.96	1.99	2.4	97.6	0.0	0.07	1.18	0.70	0.84	2.43	9980	1191	9	20	8	2	0	logfile
✔	7WLL	32587	2023-04-21	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	7RZE	24757	2023-04-23	2021-08-27	3.3	3.26	—	3.4	0.005	0.97	0.0	0.06	13.09	0.01	2.098	10.04	0.30	3.9	96.1	0.0	-3.81	0.64	0.77	2.14	3.3	0.003	0.66	0.0	0.04	16.27	0.00	2.209	7.84	0.65	4.7	95.3	0.0	-0.04	0.64	0.67	0.82	2.29	15545	1898	4	0	0	0	0	logfile
✔	6E1N	8958	2023-04-21	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.55	0.0	0.07	14.72	0.01	2.054	10.59	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.003	0.80	0.0	0.04	16.01	0.00	2.211	13.08	0.74	5.8	94.2	0.0	-0.96	0.89	0.52	0.72	0.61	10682	1278	6	0	24	2	0	logfile
✔	7RXA	24726	2023-04-20	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.004	0.59	0.0	0.04	13.97	0.00	2.236	3.35	0.00	5.0	95.0	0.0	0.66	0.32	0.67	0.85	2.86	8694	1156	4	0	8	0	0	logfile
✔	6CXC	7774	2023-04-23	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.78	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.006	0.93	0.0	0.05	16.08	0.01	2.004	29.78	0.75	9.0	91.0	0.0	-2.59	2.15	0.72	0.74	0.04	15196	1945	18	0	6	0	0	logfile
✔	6WXB	21954	2023-04-26	2020-05-10	2.9	3.45	2.92	3.4	0.007	0.85	0.0	0.05	13.74	0.00	2.307	1.70	0.71	5.6	94.4	0.0	-2.98	0.60	0.76	4.10	3.4	0.004	0.56	0.0	0.04	15.28	0.00	2.119	7.47	1.18	6.1	93.9	0.0	-0.62	1.59	0.56	0.75	3.70	22698	1455	6	0	15	0	11049	logfile

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