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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SCH | 25035 | 2023-12-09 | 2021-09-28 | 3.1 | 2.24 | 3.07 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 11.90 | 0.00 | 2.218 | 9.09 | 0.19 | 4.1 | 95.9 | 0.0 | 0.02 | 0.78 | 0.75 | 3.40 | 2.0 | 0.003 | 0.60 | 0.0 | 0.04 | 15.40 | 0.00 | 2.124 | 10.13 | 0.75 | 4.8 | 95.2 | 0.0 | 0.52 | 0.41 | 0.78 | 0.80 | 2.71 | 9711 | 1190 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XP6 | 33366 | 2023-12-08 | 2022-05-03 | 3.01 | 2.40 | 3.14 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.31 | 0.01 | 2.100 | 7.69 | 0.00 | 2.6 | 97.4 | 0.0 | 1.78 | 0.74 | 0.75 | 2.85 | 2.1 | 0.004 | 0.61 | 0.0 | 0.04 | 14.83 | 0.00 | 2.215 | 9.26 | 0.44 | 3.1 | 96.9 | 0.0 | 1.43 | 0.46 | 0.75 | 0.77 | 2.38 | 8336 | 1051 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PF5 | 13368 | 2023-12-10 | 2021-08-11 | 3.8 | 4.51 | — | 3.4 | 0.006 | 0.89 | 0.0 | 0.05 | 28.94 | 0.01 | 2.264 | 6.06 | 0.00 | 1.8 | 98.2 | 0.0 | -0.59 | 0.87 | 0.80 | 0.89 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 28.88 | 0.00 | 2.079 | 18.60 | 0.29 | 3.2 | 96.8 | 0.0 | 0.81 | 1.25 | 0.87 | 0.82 | 0.58 | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2023-12-08 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 17.15 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 15.78 | 0.00 | 2.186 | 6.22 | 0.00 | 4.2 | 95.8 | 0.0 | 3.70 | 1.65 | 0.61 | 0.73 | 0.04 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7S62 | 24847 | 2023-12-09 | 2021-09-12 | 3.65 | 3.86 | 3.61 | 3.8 | 0.005 | 0.72 | 0.0 | 0.05 | 19.02 | 0.01 | 1.694 | 11.28 | 0.08 | 8.9 | 91.0 | 0.1 | -1.38 | 0.66 | 0.78 | 1.97 | 3.8 | 0.003 | 0.69 | 0.0 | 0.05 | 16.81 | 0.01 | 2.184 | 10.82 | 0.58 | 8.8 | 91.1 | 0.1 | -1.26 | 0.35 | 0.66 | 0.77 | 1.21 | 11013 | 1382 | 1 | 0 | 17 | 0 | 0 | logfile |
✔ | 8E3Q | 27870 | 2023-12-10 | 2022-08-17 | 2.68 | 2.93 | 2.73 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.14 | 0.00 | 2.219 | 8.89 | 0.14 | 4.7 | 95.0 | 0.3 | -0.58 | 0.74 | 0.84 | 4.68 | 2.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.17 | 0.00 | 2.166 | 8.77 | 1.65 | 4.7 | 95.1 | 0.2 | -0.53 | 0.37 | 0.74 | 0.85 | 4.06 | 12739 | 1603 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DPi | 27636 | 2023-12-08 | 2022-07-15 | 3.4 | 2.28 | 3.42 | 2.1 | 0.002 | 0.55 | 0.0 | 0.06 | 10.82 | 0.00 | 2.211 | 4.16 | 0.98 | 1.3 | 98.6 | 0.1 | 1.79 | 0.73 | 0.68 | 1.99 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.09 | 0.00 | 2.058 | 6.49 | 0.98 | 2.7 | 97.3 | 0.0 | 0.63 | 0.59 | 0.75 | 0.73 | 2.13 | 8150 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7QB9 | 13882 | 2023-12-07 | 2021-11-18 | 3.1 | 3.36 | 3.16 | 3.4 | 0.008 | 1.01 | 0.0 | 0.06 | 12.61 | 0.01 | 2.291 | 2.92 | 0.00 | 3.5 | 96.5 | 0.0 | -2.92 | 0.56 | 0.81 | 2.83 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 12.34 | 0.00 | 2.213 | 3.98 | 0.19 | 2.2 | 97.8 | 0.0 | 2.48 | 0.38 | 0.54 | 0.82 | 2.18 | 5419 | 598 | 4 | 0 | 26 | 0 | 0 | logfile |
✔ | 7YUY | 34115 | 2023-12-09 | 2022-08-18 | 3.5 | 3.66 | 3.45 | 3.6 | 0.006 | 0.87 | 0.0 | 0.05 | 15.15 | 0.01 | 2.081 | 7.73 | 0.32 | 9.7 | 90.1 | 0.2 | -2.51 | 0.69 | 0.85 | 3.04 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 15.96 | 0.00 | 2.181 | 5.28 | 0.16 | 8.7 | 91.1 | 0.2 | -0.81 | 0.99 | 0.69 | 0.85 | 1.78 | 12391 | 1503 | 4 | 0 | 31 | 0 | 0 | logfile |
✔ | 8HBD | 34619 | 2023-12-08 | 2022-10-28 | 2.99 | 2.40 | 2.80 | 3.0 | 0.003 | 0.71 | 0.0 | 0.04 | 16.47 | 0.00 | 1.912 | 13.34 | 1.85 | 3.8 | 96.0 | 0.2 | 0.26 | 0.74 | 0.76 | 1.67 | 2.2 | 0.003 | 0.70 | 0.0 | 0.04 | 17.55 | 0.00 | 2.050 | 14.61 | 2.62 | 3.7 | 96.3 | 0.0 | 0.20 | 0.59 | 0.76 | 0.79 | 1.63 | 8803 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LH2 | 23334 | 2023-12-09 | 2021-01-21 | 3.43 | 4.01 | — | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 13.02 | 0.00 | 2.030 | 7.06 | 0.18 | 2.7 | 97.3 | 0.0 | 0.96 | 0.66 | 0.82 | 1.96 | 3.9 | 0.004 | 0.61 | 0.0 | 0.04 | 14.58 | 0.00 | 2.172 | 7.66 | 0.26 | 3.3 | 96.7 | 0.0 | 1.07 | 0.78 | 0.68 | 0.86 | 2.23 | 10528 | 1360 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RAV | 24387 | 2023-12-08 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.92 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | 2.2 | 0.003 | 0.85 | 0.0 | 0.05 | 17.66 | 0.00 | 2.141 | 16.84 | 0.15 | 15.3 | 84.6 | 0.1 | -2.91 | 0.45 | 0.73 | 0.73 | 1.99 | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YK6 | 33888 | 2023-12-08 | 2022-07-21 | 3.03 | 2.39 | 3.06 | 2.1 | 0.006 | 0.73 | 0.0 | 0.05 | 14.22 | 0.01 | 2.130 | 11.24 | 0.21 | 5.5 | 94.4 | 0.1 | -0.18 | 0.73 | 0.74 | 2.51 | 2.1 | 0.003 | 0.62 | 0.0 | 0.04 | 16.30 | 0.00 | 2.127 | 10.54 | 0.32 | 5.0 | 95.0 | 0.0 | 0.28 | 1.13 | 0.73 | 0.75 | 2.05 | 8736 | 1118 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y67 | 33636 | 2023-12-09 | 2022-06-18 | 2.8 | 2.24 | 2.75 | 2.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.09 | 0.01 | 1.877 | 7.05 | 0.10 | 2.5 | 97.5 | 0.0 | 0.59 | 0.78 | 0.77 | 2.53 | 2.1 | 0.004 | 0.59 | 0.0 | 0.04 | 16.70 | 0.00 | 2.145 | 5.24 | 2.29 | 3.6 | 96.4 | 0.0 | 0.45 | 0.48 | 0.81 | 0.82 | 2.59 | 8889 | 1135 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-12-09 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.57 | 0.0 | 0.03 | 10.49 | 0.00 | 2.035 | 10.98 | 0.00 | 5.0 | 95.0 | 0.0 | -0.56 | 1.47 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 6M5U | 30093 | 2023-12-09 | 2020-03-11 | 3.8 | 3.78 | — | 3.8 | 0.007 | 0.86 | 1.0 | 0.05 | 16.07 | 0.00 | 2.210 | 18.52 | 5.59 | 9.0 | 90.8 | 0.2 | -3.03 | 0.62 | 0.81 | 1.90 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.64 | 0.00 | 2.217 | 10.64 | 0.27 | 8.1 | 91.9 | 0.0 | -0.18 | 2.21 | 0.64 | 0.82 | 1.45 | 10549 | 1359 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6oY3 | 20221 | 2023-12-09 | 2019-05-14 | 4.0 | 4.14 | — | 4.1 | 0.009 | 1.10 | 0.0 | 0.06 | 15.73 | 0.01 | 2.285 | 9.49 | 0.40 | 6.9 | 92.9 | 0.2 | -6.09 | 0.68 | 0.81 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 16.85 | 0.00 | 2.257 | 8.23 | 0.20 | 3.6 | 96.4 | 0.1 | -1.51 | 0.51 | 0.68 | 0.80 | — | 9534 | 1188 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XP5 | 33365 | 2023-12-08 | 2022-05-03 | 3.08 | 2.39 | 3.13 | 2.1 | 0.004 | 0.59 | 0.0 | 0.04 | 12.66 | 0.00 | 2.198 | 8.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.69 | 0.74 | 0.75 | 2.94 | 2.1 | 0.005 | 0.64 | 0.0 | 0.04 | 15.41 | 0.00 | 1.995 | 9.56 | 0.22 | 3.4 | 96.6 | 0.0 | 1.55 | 1.11 | 0.75 | 0.78 | 2.32 | 8381 | 1059 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2023-12-09 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.07 | 0.01 | 2.120 | 15.81 | 0.19 | 9.8 | 90.2 | 0.0 | -3.13 | 1.76 | 0.54 | 0.59 | 0.81 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-12-09 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.12 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.003 | 0.58 | 0.0 | 0.03 | 27.35 | 0.00 | 2.125 | 9.43 | 0.83 | 2.3 | 97.7 | 0.0 | 2.18 | 0.57 | 0.70 | 0.79 | 0.98 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |