Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S85	10116	2023-04-24	2019-07-08	4.2	4.30	—	4.2	0.008	1.01	3.0	0.06	19.02	0.01	1.775	18.62	1.03	7.8	91.9	0.3	-3.59	0.84	0.82	—	4.1	0.007	0.79	0.0	0.04	18.12	0.00	1.874	19.05	0.00	7.5	92.4	0.1	-1.13	1.04	0.85	0.84	—	13018	1486	10	63	8	0	0	logfile
✔	8FX8	29526	2023-04-24	2023-01-24	3.26	3.88	3.11	3.5	0.005	0.56	0.0	0.04	13.47	0.00	2.256	4.66	0.00	3.4	96.6	0.0	1.64	0.77	0.84	3.57	3.5	0.002	0.52	0.0	0.04	14.28	0.00	2.252	3.96	0.12	3.6	96.4	0.0	2.30	0.29	0.78	0.86	3.26	18077	2388	12	0	5	4	0	logfile
✔	7M68	23690	2023-04-26	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.54	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✔	7RoZ	24610	2023-04-20	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.004	0.68	0.0	0.04	15.55	0.00	2.050	14.87	0.39	8.3	91.7	0.0	-1.04	1.16	0.85	0.83	2.86	7774	1064	1	0	1	0	0	logfile
✔	6ZP4	11335	2023-04-23	2020-07-08	2.9	2.98	—	2.6	0.007	0.92	0.0	0.05	15.90	0.01	2.079	4.90	0.33	5.3	94.7	0.1	-3.82	0.84	0.81	2.89	2.6	0.005	0.71	0.0	0.04	16.50	0.00	1.891	10.59	2.41	5.4	94.6	0.0	-0.43	0.45	0.89	0.88	2.55	117784	10408	59	1796	6	0	0	logfile
✔	7K9L	22754	2023-04-21	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.75	0.0	0.04	14.11	0.00	2.177	19.89	0.00	4.1	95.9	0.0	0.32	1.01	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	7VHM	31999	2023-04-27	2021-09-22	3.2	3.32	—	3.3	0.004	0.66	0.0	0.05	14.39	0.01	2.124	10.68	0.00	6.6	93.4	0.0	-2.95	0.73	0.80	2.94	3.3	0.006	0.64	0.0	0.05	15.42	0.00	2.149	9.85	0.36	7.3	92.7	0.0	-1.83	0.29	0.74	0.85	2.81	24972	3237	3	0	0	0	0	logfile
✔	6WJJ	21694	2023-04-20	2020-04-13	3.8	3.85	—	3.8	0.008	1.05	3.0	0.06	10.44	0.01	2.163	4.56	0.89	5.8	94.2	0.0	-3.43	0.74	0.81	2.71	3.8	0.002	0.56	0.0	0.04	14.15	0.00	2.130	7.82	0.23	3.3	96.7	0.0	-0.01	1.31	0.74	0.80	1.86	56908	7076	24	0	24	0	0	logfile
✔	5KUF	8289	2023-04-26	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.003	0.69	0.0	0.04	13.57	0.00	2.155	13.20	0.35	5.9	94.1	0.0	-1.38	1.57	0.61	0.71	1.29	23728	3000	8	0	4	0	0	logfile
✔	7SVR	25452	2023-04-20	2021-11-19	3.9	4.11	—	4.1	0.004	0.80	0.0	0.05	14.31	0.00	2.213	6.79	0.00	4.3	95.7	0.0	-2.10	0.63	0.74	1.24	4.0	0.004	0.68	0.0	0.04	16.79	0.00	2.243	8.51	0.68	7.1	92.9	0.0	0.26	0.49	0.65	0.76	0.97	7841	1134	3	0	20	0	0	logfile
✔	6SNi	10258	2023-04-20	2019-08-24	3.0	3.18	—	3.2	0.020	1.04	0.0	0.11	14.15	0.00	2.044	24.53	8.07	9.2	90.5	0.2	-4.21	0.64	0.73	2.67	3.3	0.003	0.63	0.0	0.04	14.90	0.01	2.154	6.40	3.60	4.6	95.4	0.0	0.04	1.26	0.66	0.85	2.21	7510	918	7	0	8	7	0	logfile
✔	6T72	10389	2023-04-27	2019-10-21	3.7	3.79	—	3.8	0.008	1.55	0.0	0.11	14.78	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.55	0.0	0.03	15.25	0.00	2.116	3.29	0.38	2.0	98.0	0.0	1.85	1.24	0.78	0.87	1.54	26278	3388	42	0	210	0	0	logfile
✔	7TCG	25811	2023-04-21	2021-12-23	3.8	3.89	3.84	3.9	0.004	1.15	0.0	0.04	15.72	0.00	2.138	5.54	0.00	7.9	92.1	0.0	-0.53	0.67	0.81	1.03	3.9	0.002	0.66	0.0	0.04	17.01	0.00	2.132	6.43	0.31	7.1	92.9	0.0	-0.18	0.93	0.67	0.82	0.85	8891	1123	4	0	1	0	0	logfile
✔	7VAP	31857	2023-04-29	2021-08-30	3.0	2.45	2.98	2.9	0.004	0.54	0.0	0.04	13.36	0.00	1.645	3.89	0.00	2.0	98.0	0.0	1.43	0.54	0.79	3.19	2.9	0.003	0.58	0.0	0.04	17.12	0.00	1.931	5.93	2.50	2.3	97.7	0.0	0.60	0.62	0.63	0.85	2.90	29558	3788	15	0	6	0	0	logfile
✔	7KTQ	23026	2023-04-22	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.33	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.55	0.0	0.03	29.41	0.00	2.071	5.72	0.64	2.3	97.7	0.0	3.03	1.42	0.78	0.88	2.44	12745	752	10	331	0	0	0	logfile
✔	7FBi	31515	2023-04-20	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	6JPU	9871	2023-04-29	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.08	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.003	0.67	0.0	0.04	13.41	0.00	1.861	100.50	0.00	10.5	89.5	0.0	-1.47	1.12	0.80	0.78	—	30378	3462	6	0	0	0	2610	logfile
✔	6CNN	7538	2023-04-23	2018-03-08	3.5	3.63	—	3.6	0.008	1.07	0.0	0.05	10.14	0.01	2.016	1.24	0.00	4.0	96.0	0.0	-4.29	0.66	0.83	2.52	3.6	0.004	0.64	0.0	0.04	15.00	0.00	2.169	5.20	0.40	2.9	97.0	0.0	2.05	0.74	0.67	0.84	1.97	15740	2024	16	0	28	0	0	logfile
✔	6W4S	21539	2023-04-20	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.003	0.60	0.0	0.04	15.27	0.00	2.146	9.20	0.19	3.8	96.2	0.0	1.79	0.46	0.57	0.84	2.13	4986	650	3	0	0	0	0	logfile
✔	6WBV	21599	2023-04-21	2020-03-27	2.5	2.82	2.57	2.7	0.006	0.94	2.0	0.05	15.30	0.01	1.797	7.03	4.26	3.5	96.5	0.0	-0.54	0.67	0.87	4.32	2.7	0.003	0.62	0.0	0.04	16.03	0.00	1.979	7.18	2.66	2.4	97.6	0.0	2.21	0.96	0.67	0.89	3.61	6860	892	7	0	4	11	0	logfile

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