Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2022-04-04	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	5G2Y	3332	2022-04-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5G2X	3331	2022-04-06	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	7KoD	22972	2022-04-06	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7o5H	12736	2022-04-08	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.55	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile
✔	7R9U	24331	2022-04-04	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.53	0.0	0.04	8.66	0.00	1.913	10.10	0.00	3.8	96.2	0.0	0.26	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7R9K	24328	2022-04-04	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.52	0.0	0.04	8.10	0.00	1.907	9.19	0.00	5.0	95.0	0.0	0.38	1.77	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	5N6W	3595	2022-04-09	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.021	1.61	1.0	0.04	10.59	0.01	1.586	23.47	0.04	11.8	87.5	0.6	-4.11	1.47	0.68	0.64	—	40752	2512	16	0	0	0	20032	logfile
✔	6X32	22015	2022-04-05	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.008	0.84	3.0	0.04	13.31	0.01	1.508	10.98	0.16	2.8	97.2	0.0	0.31	1.67	0.60	0.73	1.88	114280	14744	16	0	1416	0	0	logfile
✔	6MWQ	9277	2022-04-06	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.75	0.0	0.04	13.37	0.00	2.114	9.31	2.04	4.9	94.9	0.2	-1.32	1.34	0.78	0.86	1.93	22072	2873	8	0	0	0	0	logfile
✔	7Fii	31598	2022-04-05	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.52	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6XLG	22243	2022-04-05	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.56	0.0	0.04	16.65	0.00	2.000	8.70	1.78	2.2	97.8	0.0	-0.16	3.07	0.77	0.88	4.10	12258	1504	6	0	6	0	0	logfile
✔	6X35	22018	2022-04-05	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.007	0.77	1.0	0.04	11.45	0.01	2.167	10.22	0.00	3.8	96.2	0.0	0.78	1.69	0.58	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2022-04-05	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.20	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.68	0.0	0.04	11.88	0.00	2.069	10.18	0.05	3.9	96.1	0.0	0.00	0.68	0.58	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	7TJ2	25915	2022-04-06	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	8.62	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.005	0.59	0.0	0.04	13.55	0.00	2.183	6.46	0.28	3.4	96.6	0.0	-0.19	2.83	0.71	0.82	3.48	17083	2007	8	62	0	0	0	logfile
✔	7R9E	24324	2022-04-04	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.58	0.0	0.04	9.06	0.00	2.156	9.58	0.00	5.2	94.8	0.0	0.03	2.07	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	6NEQ	9358	2022-04-05	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.00	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile
✔	6YW5	10958	2022-04-11	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.52	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.002	0.51	0.0	0.03	13.94	0.00	1.860	4.33	0.66	2.4	97.6	0.0	1.20	0.63	0.73	0.88	4.10	167548	7528	47	1435	120	0	76656	logfile
✔	7VX9	32172	2022-04-09	2021-11-12	4.0	4.30	—	4.2	0.002	0.37	0.0	0.04	7.20	0.00	2.022	12.45	0.00	4.1	95.8	0.1	-2.09	0.63	0.59	—	4.1	0.003	0.64	0.0	0.04	14.40	0.00	1.913	37.84	0.48	3.9	96.0	0.2	-0.67	1.39	0.67	0.72	—	46098	3789	4	0	0	0	16250	logfile
✔	5ZBo	6746	2022-04-08	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.77	1.0	0.04	13.18	0.00	2.045	19.38	0.00	5.9	94.1	0.0	-2.25	2.94	0.74	0.79	—	89100	10860	60	0	0	0	0	logfile

• Page 1 of 366
• next →