Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2021-08-07	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	5G2Y	3332	2021-08-08	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.93	0.01	1.976	72.56	0.00	0.0	0.0	0.0	—	3.28	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	5G2X	3331	2021-08-08	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.99	0.0	0.05	21.03	0.01	1.921	46.80	0.23	20.8	77.9	1.3	-4.85	2.50	0.81	0.67	1.09	19072	487	3	704	0	0	0	logfile
✘	6PCH	20300	2021-08-10	2019-06-17	2.9	3.23	—	3.1	0.003	0.33	0.0	0.02	12.54	0.00	1.216	3.89	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72134	964	8	3015	1	0	0	logfile
✔	7o5H	12736	2021-08-10	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.007	0.72	0.0	0.04	14.86	0.01	1.179	14.09	0.56	4.2	95.8	0.0	0.21	1.49	0.87	0.85	1.47	34436	1730	22	964	167	0	0	logfile
✔	7KoD	22972	2021-08-10	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.81	0.00	1.878	1.88	0.11	0.9	99.1	0.0	5.24	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	6X32	22015	2021-08-09	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.007	0.72	3.0	0.04	13.43	0.01	2.158	7.74	0.26	2.8	97.2	0.0	0.78	1.68	0.60	0.73	1.78	114280	14744	16	0	1416	0	0	logfile
✔	6XLF	22242	2021-08-08	2020-06-28	3.15	3.29	—	3.2	0.001	0.36	0.0	0.04	12.66	0.00	2.115	6.23	1.20	1.6	98.4	0.0	-4.12	0.75	0.79	2.37	3.2	0.005	0.62	0.0	0.05	15.83	0.00	1.930	10.34	0.53	4.0	96.0	0.0	-1.10	2.48	0.78	0.85	2.91	13653	1680	6	0	6	0	0	logfile
✔	6MWQ	9277	2021-08-09	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.008	0.94	1.0	0.04	13.37	0.00	2.073	8.95	1.32	3.7	96.1	0.2	-1.15	1.35	0.80	0.85	1.81	22072	2873	8	0	0	0	0	logfile
✔	6XLG	22243	2021-08-08	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.004	0.60	0.0	0.04	16.75	0.00	1.989	9.68	2.00	2.3	97.7	0.0	-0.27	3.19	0.77	0.88	4.05	12258	1504	6	0	6	0	0	logfile
✔	5N6W	3595	2021-08-11	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	6XLE	22241	2021-08-08	2020-06-28	2.74	2.85	—	2.8	0.001	0.36	0.0	0.04	9.93	0.00	2.095	5.07	0.07	1.4	98.6	0.0	-3.54	0.75	0.80	3.20	2.8	0.004	0.59	0.0	0.04	16.52	0.00	1.972	8.38	1.11	2.9	97.1	0.0	-0.38	1.32	0.79	0.86	3.43	12240	1502	6	0	6	0	0	logfile
✔	6XLD	22240	2021-08-08	2020-06-28	3.66	3.78	—	3.7	0.001	0.37	0.0	0.04	9.87	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.004	0.62	0.0	0.04	14.60	0.00	1.923	10.95	0.08	3.5	96.5	0.0	-0.45	1.40	0.80	0.81	2.44	10992	1349	5	0	4	0	0	logfile
✔	6NEQ	9358	2021-08-09	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.006	0.67	0.0	0.03	16.26	0.00	2.095	11.27	0.35	5.1	94.9	0.1	0.02	2.05	0.85	0.84	1.31	65776	5509	32	952	147	0	0	logfile
✔	6X35	22018	2021-08-09	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.80	2.0	0.04	11.60	0.01	1.614	11.87	0.01	4.1	95.9	0.0	0.71	1.71	0.57	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2021-08-09	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.19	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.67	0.0	0.04	11.75	0.00	2.108	9.44	0.12	4.1	95.9	0.0	0.15	0.72	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6YW5	10958	2021-08-08	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.003	0.51	0.0	0.03	14.01	0.00	1.907	4.18	0.59	2.2	97.8	0.0	1.39	0.64	0.73	0.88	3.97	167548	7528	47	1435	120	0	76656	logfile
✔	6XLC	22239	2021-08-07	2020-06-28	3.66	3.01	—	3.7	0.001	0.38	0.0	0.04	12.67	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.004	0.65	0.0	0.04	15.92	0.01	1.913	13.20	0.46	2.8	97.2	0.0	-0.39	1.48	0.72	0.75	2.05	9858	1212	4	0	4	0	0	logfile
✔	7JSE	22451	2021-08-08	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.12	0.0	0.09	14.79	0.00	2.151	10.99	0.00	21.9	78.1	0.0	-2.77	2.79	0.69	0.70	—	13288	3168	24	32	0	0	0	logfile
✔	6NF8	9362	2021-08-09	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.005	0.77	0.0	0.04	16.07	0.01	2.045	13.54	0.37	5.6	94.4	0.0	-0.36	3.21	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile

• Page 1 of 276
• next →