Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PiM	13442	2022-12-12	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	46.38	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	11.74	0.00	1.950	63.22	0.00	1.7	98.3	0.0	1.07	1.08	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	6W18	21503	2022-12-13	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.73	0.0	0.05	12.79	0.00	2.119	10.66	0.09	7.9	92.1	0.0	-1.71	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7oJN	12956	2022-12-13	2021-05-16	2.92	3.27	2.88	2.9	0.004	0.41	0.0	0.04	9.25	0.00	1.859	3.60	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.004	0.53	0.0	0.04	13.00	0.00	2.064	6.16	1.91	5.3	94.7	0.0	0.48	2.61	0.91	0.91	3.08	16991	2010	6	39	7	0	0	logfile
✔	7TD2	25821	2022-12-13	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.78	0.00	2.175	2.29	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.004	0.51	0.0	0.04	14.66	0.00	1.960	6.12	0.42	3.9	96.1	0.0	1.21	1.23	0.54	0.79	3.15	13528	904	5	0	1	0	6632	logfile
✔	7WKD	32565	2022-12-13	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	7.01	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.74	0.0	0.04	14.54	0.00	1.933	13.40	0.21	2.8	97.2	0.0	0.58	1.04	0.72	0.74	2.53	17515	1120	6	0	0	0	8712	logfile
✔	7FiJ	31599	2022-12-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7VXA	32173	2022-12-21	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	13.02	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.003	0.58	0.0	0.04	13.72	0.00	1.935	31.14	0.33	4.3	95.7	0.1	-0.47	1.71	0.65	0.72	1.00	46176	3795	4	0	0	0	16288	logfile
✔	6ZGG	11205	2022-12-15	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.003	0.65	0.0	0.04	11.44	0.00	2.162	8.29	0.11	4.8	95.2	0.0	-0.69	1.77	0.87	0.82	1.14	25096	3207	3	0	0	0	0	logfile
✔	6U5S	20654	2022-12-16	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.005	0.51	0.0	0.04	13.52	0.00	2.085	7.07	0.00	4.9	95.1	0.0	-0.13	1.23	0.83	0.83	4.47	21461	1504	12	0	20	0	9755	logfile
✔	7WoG	32651	2022-12-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.0	0.003	0.73	0.0	0.04	10.85	0.01	2.047	20.44	0.00	13.8	86.2	0.0	-2.46	1.00	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7PE8	13348	2022-12-16	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.56	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.003	0.53	0.0	0.04	12.65	0.00	2.199	7.25	0.34	4.1	95.9	0.0	0.68	0.49	0.80	0.83	1.93	29291	3832	8	0	3	0	0	logfile
✔	7UVT	26816	2022-12-12	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.71	0.0	0.04	18.04	0.01	1.910	21.51	0.00	0.0	0.0	0.0	—	0.47	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7EU8	31309	2022-12-14	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.003	0.58	0.0	0.04	8.85	0.00	2.112	8.24	0.00	4.3	95.5	0.2	-0.27	1.40	0.78	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	6WCB	21605	2022-12-12	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.48	0.0	0.03	15.53	0.00	2.084	3.96	0.16	1.5	98.5	0.0	3.59	1.29	0.54	0.79	2.38	11647	734	6	0	7	40	5904	logfile
✔	7QN6	14068	2022-12-13	2021-12-20	2.9	2.96	—	2.9	0.002	0.41	0.0	0.04	9.96	0.00	2.205	5.26	0.39	0.9	99.1	0.0	2.50	0.74	0.86	4.53	2.9	0.004	0.68	0.0	0.05	15.24	0.00	2.036	8.85	3.14	2.1	97.9	0.0	1.37	1.48	0.76	0.90	4.34	16821	1995	20	0	32	0	0	logfile
✔	7Xo3	33335	2022-12-11	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.004	0.58	0.0	0.05	16.32	0.00	2.257	2.82	2.65	12.3	87.7	0.0	-1.83	2.17	0.48	0.85	5.48	2598	378	6	0	0	0	0	logfile
✔	7VXB	32174	2022-12-16	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.40	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.003	0.66	0.0	0.04	14.28	0.00	2.009	12.67	0.42	3.7	96.2	0.1	0.04	1.18	0.66	0.75	1.10	29888	3795	4	0	0	0	0	logfile
✔	6X34	22017	2022-12-17	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.002	0.67	0.0	0.04	9.61	0.00	2.134	10.72	0.02	3.5	96.5	0.0	0.44	0.94	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	7TB3	25791	2022-12-22	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.57	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.004	0.66	0.0	0.04	15.18	0.00	2.152	9.23	1.88	3.0	97.0	0.0	3.05	0.99	0.74	0.86	2.01	48000	5832	24	0	0	0	0	logfile
✔	6PCT	20307	2022-12-14	2019-06-18	2.8	3.01	—	2.9	0.006	0.41	2.0	0.03	12.70	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.60	0.0	0.03	14.49	0.01	2.104	8.47	4.34	6.0	93.9	0.1	-0.86	0.93	0.67	0.88	4.41	72198	964	8	3015	1	0	0	logfile

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