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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PiM | 13442 | 2022-12-12 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 46.38 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.46 | 0.0 | 0.03 | 11.74 | 0.00 | 1.950 | 63.22 | 0.00 | 1.7 | 98.3 | 0.0 | 1.07 | 1.08 | 0.82 | 0.76 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 6W18 | 21503 | 2022-12-13 | 2020-03-03 | 4.2 | 4.20 | 4.18 | 4.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.01 | 0.00 | 2.196 | 4.75 | 0.00 | 3.0 | 97.0 | 0.0 | -3.43 | 0.71 | 0.62 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.05 | 12.79 | 0.00 | 2.119 | 10.66 | 0.09 | 7.9 | 92.1 | 0.0 | -1.71 | 1.34 | 0.77 | 0.71 | — | 13151 | 1837 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7oJN | 12956 | 2022-12-13 | 2021-05-16 | 2.92 | 3.27 | 2.88 | 2.9 | 0.004 | 0.41 | 0.0 | 0.04 | 9.25 | 0.00 | 1.859 | 3.60 | 0.93 | 4.7 | 95.2 | 0.1 | 0.93 | 0.88 | 0.83 | 3.05 | 3.0 | 0.004 | 0.53 | 0.0 | 0.04 | 13.00 | 0.00 | 2.064 | 6.16 | 1.91 | 5.3 | 94.7 | 0.0 | 0.48 | 2.61 | 0.91 | 0.91 | 3.08 | 16991 | 2010 | 6 | 39 | 7 | 0 | 0 | logfile |
✔ | 7TD2 | 25821 | 2022-12-13 | 2021-12-30 | 3.11 | 3.30 | — | 3.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.78 | 0.00 | 2.175 | 2.29 | 0.42 | 1.1 | 98.9 | 0.0 | -0.58 | 0.53 | 0.76 | 2.85 | 3.2 | 0.004 | 0.51 | 0.0 | 0.04 | 14.66 | 0.00 | 1.960 | 6.12 | 0.42 | 3.9 | 96.1 | 0.0 | 1.21 | 1.23 | 0.54 | 0.79 | 3.15 | 13528 | 904 | 5 | 0 | 1 | 0 | 6632 | logfile |
✔ | 7WKD | 32565 | 2022-12-13 | 2022-01-09 | 3.01 | 2.29 | — | 3.1 | 0.007 | 0.41 | 1.0 | 0.04 | 7.82 | 0.00 | 1.978 | 7.01 | 0.31 | 1.4 | 98.6 | 0.0 | -1.70 | 0.68 | 0.66 | 1.77 | 3.1 | 0.017 | 0.74 | 0.0 | 0.04 | 14.54 | 0.00 | 1.933 | 13.40 | 0.21 | 2.8 | 97.2 | 0.0 | 0.58 | 1.04 | 0.72 | 0.74 | 2.53 | 17515 | 1120 | 6 | 0 | 0 | 0 | 8712 | logfile |
✔ | 7FiJ | 31599 | 2022-12-11 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.007 | 0.96 | 0.0 | 0.05 | 12.41 | 0.00 | 2.193 | 14.37 | 2.50 | 18.3 | 81.7 | 0.0 | -2.16 | 0.76 | 0.61 | 0.55 | 2.86 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXA | 32173 | 2022-12-21 | 2021-11-12 | 3.9 | 4.16 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.17 | 0.00 | 2.017 | 13.02 | 0.00 | 4.3 | 95.7 | 0.0 | -1.90 | 0.60 | 0.60 | 0.95 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 13.72 | 0.00 | 1.935 | 31.14 | 0.33 | 4.3 | 95.7 | 0.1 | -0.47 | 1.71 | 0.65 | 0.72 | 1.00 | 46176 | 3795 | 4 | 0 | 0 | 0 | 16288 | logfile |
✔ | 6ZGG | 11205 | 2022-12-15 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 11.44 | 0.00 | 2.162 | 8.29 | 0.11 | 4.8 | 95.2 | 0.0 | -0.69 | 1.77 | 0.87 | 0.82 | 1.14 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5S | 20654 | 2022-12-16 | 2019-08-28 | 3.07 | 3.44 | — | 3.4 | 0.003 | 0.41 | 0.0 | 0.07 | 12.04 | 0.00 | 2.078 | 6.02 | 0.00 | 3.3 | 96.7 | 0.0 | -3.21 | 0.81 | 0.80 | 4.41 | 3.3 | 0.005 | 0.51 | 0.0 | 0.04 | 13.52 | 0.00 | 2.085 | 7.07 | 0.00 | 4.9 | 95.1 | 0.0 | -0.13 | 1.23 | 0.83 | 0.83 | 4.47 | 21461 | 1504 | 12 | 0 | 20 | 0 | 9755 | logfile |
✔ | 7WoG | 32651 | 2022-12-11 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.0 | 0.003 | 0.73 | 0.0 | 0.04 | 10.85 | 0.01 | 2.047 | 20.44 | 0.00 | 13.8 | 86.2 | 0.0 | -2.46 | 1.00 | 0.54 | 0.54 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PE8 | 13348 | 2022-12-16 | 2021-08-09 | 3.2 | 3.51 | — | 3.4 | 0.002 | 0.41 | 0.0 | 0.04 | 8.71 | 0.00 | 2.255 | 4.56 | 1.65 | 3.2 | 96.8 | 0.0 | -0.20 | 0.79 | 0.81 | 2.75 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 12.65 | 0.00 | 2.199 | 7.25 | 0.34 | 4.1 | 95.9 | 0.0 | 0.68 | 0.49 | 0.80 | 0.83 | 1.93 | 29291 | 3832 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2022-12-12 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 16.13 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.71 | 0.0 | 0.04 | 18.04 | 0.01 | 1.910 | 21.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.77 | 0.76 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7EU8 | 31309 | 2022-12-14 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.41 | 0.0 | 0.04 | 8.07 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 8.85 | 0.00 | 2.112 | 8.24 | 0.00 | 4.3 | 95.5 | 0.2 | -0.27 | 1.40 | 0.78 | 0.69 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6WCB | 21605 | 2022-12-12 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 15.53 | 0.00 | 2.084 | 3.96 | 0.16 | 1.5 | 98.5 | 0.0 | 3.59 | 1.29 | 0.54 | 0.79 | 2.38 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |
✔ | 7QN6 | 14068 | 2022-12-13 | 2021-12-20 | 2.9 | 2.96 | — | 2.9 | 0.002 | 0.41 | 0.0 | 0.04 | 9.96 | 0.00 | 2.205 | 5.26 | 0.39 | 0.9 | 99.1 | 0.0 | 2.50 | 0.74 | 0.86 | 4.53 | 2.9 | 0.004 | 0.68 | 0.0 | 0.05 | 15.24 | 0.00 | 2.036 | 8.85 | 3.14 | 2.1 | 97.9 | 0.0 | 1.37 | 1.48 | 0.76 | 0.90 | 4.34 | 16821 | 1995 | 20 | 0 | 32 | 0 | 0 | logfile |
✔ | 7Xo3 | 33335 | 2022-12-11 | 2022-04-30 | 2.6 | 2.32 | 1.68 | 2.7 | 0.002 | 0.41 | 0.0 | 0.05 | 12.37 | 0.00 | 2.223 | 4.70 | 0.00 | 8.2 | 91.8 | 0.0 | -3.31 | 0.45 | 0.81 | 5.78 | 2.7 | 0.004 | 0.58 | 0.0 | 0.05 | 16.32 | 0.00 | 2.257 | 2.82 | 2.65 | 12.3 | 87.7 | 0.0 | -1.83 | 2.17 | 0.48 | 0.85 | 5.48 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXB | 32174 | 2022-12-16 | 2021-11-12 | 3.9 | 4.21 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.20 | 0.00 | 2.045 | 12.40 | 0.00 | 4.1 | 95.8 | 0.0 | -1.93 | 0.60 | 0.62 | 0.94 | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 14.28 | 0.00 | 2.009 | 12.67 | 0.42 | 3.7 | 96.2 | 0.1 | 0.04 | 1.18 | 0.66 | 0.75 | 1.10 | 29888 | 3795 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2022-12-17 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.87 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.002 | 0.67 | 0.0 | 0.04 | 9.61 | 0.00 | 2.134 | 10.72 | 0.02 | 3.5 | 96.5 | 0.0 | 0.44 | 0.94 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 7TB3 | 25791 | 2022-12-22 | 2021-12-21 | 2.57 | 3.30 | — | 3.1 | 0.002 | 0.41 | 0.0 | 0.03 | 9.42 | 0.00 | 2.212 | 4.57 | 1.06 | 9.5 | 90.1 | 0.4 | 0.76 | 0.74 | 0.74 | 1.78 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 15.18 | 0.00 | 2.152 | 9.23 | 1.88 | 3.0 | 97.0 | 0.0 | 3.05 | 0.99 | 0.74 | 0.86 | 2.01 | 48000 | 5832 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PCT | 20307 | 2022-12-14 | 2019-06-18 | 2.8 | 3.01 | — | 2.9 | 0.006 | 0.41 | 2.0 | 0.03 | 12.70 | 0.02 | 1.891 | 2.99 | 2.50 | 6.3 | 93.6 | 0.1 | -3.70 | 0.66 | 0.85 | 4.28 | 2.9 | 0.004 | 0.60 | 0.0 | 0.03 | 14.49 | 0.01 | 2.104 | 8.47 | 4.34 | 6.0 | 93.9 | 0.1 | -0.86 | 0.93 | 0.67 | 0.88 | 4.41 | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |