Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7VXB	32174	2023-04-29	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.33	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.12	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	7oJN	12956	2023-04-24	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.23	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.90	0.00	2.095	5.50	1.53	5.0	95.0	0.0	0.73	2.62	0.91	0.90	3.01	16991	2010	6	39	7	0	0	logfile
✔	7UVT	26816	2023-04-22	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7oDR	12845	2023-04-19	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile
✔	6WCB	21605	2023-04-22	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	7oDT	12847	2023-04-21	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile
✔	6W18	21503	2023-04-22	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.37	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7PE8	13348	2023-04-29	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.13	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	7T4N	25681	2023-04-20	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7T8C	25744	2023-04-28	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7U1E	26299	2023-04-24	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.36	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.005	0.72	0.0	0.05	11.96	0.00	2.129	15.55	0.00	6.0	94.0	0.0	0.02	0.62	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7EU8	31309	2023-04-24	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7WU9	32824	2023-04-20	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.62	0.0	0.04	15.22	0.00	2.261	8.40	0.43	3.0	97.0	0.0	1.17	0.82	0.68	0.83	2.14	7369	1030	5	0	0	0	0	logfile
✔	8DK1	27480	2023-04-25	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	12.85	0.00	2.260	3.98	1.49	3.6	96.4	0.0	2.59	0.62	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	7oZN	13129	2023-04-20	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.69	0.00	2.069	15.15	0.51	3.5	96.5	0.0	-0.01	0.84	0.80	0.78	1.48	54330	6774	32	0	10	0	0	logfile
✔	8GS2	34218	2023-04-24	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	7EoS	31229	2023-04-27	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	8.87	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.68	0.0	0.04	12.42	0.00	2.139	12.94	0.34	6.1	93.9	0.1	-0.43	1.30	0.90	0.83	1.30	24600	3106	8	0	18	0	0	logfile

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