Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J2Q	9771	2022-07-02	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.79	0.0	0.04	15.52	0.01	2.019	16.08	0.55	4.3	95.6	0.1	-0.65	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	6J2X	9772	2022-07-02	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.73	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.006	0.88	1.0	0.05	15.41	0.01	1.603	21.95	0.40	4.7	95.2	0.2	-0.89	1.88	0.84	0.77	0.95	106176	13501	47	0	0	0	0	logfile
✔	7QNB	14073	2022-07-04	2021-12-20	3.1	3.62	—	3.3	0.002	0.40	0.0	0.04	9.33	0.00	2.241	5.57	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.65	0.0	0.04	12.91	0.00	2.134	8.56	0.38	2.4	97.6	0.0	1.24	2.14	0.78	0.89	3.66	14793	1767	15	0	24	0	0	logfile
✘	7QND	14075	2022-07-04	2021-12-20	3.4	3.55	—	3.4	0.002	0.40	0.0	0.04	7.68	0.00	1.229	5.00	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16810	1995	19	0	33	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7oo8	13007	2022-07-04	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✘	7oDT	12847	2022-07-03	2021-04-30	3.1	3.31	—	3.1	0.002	0.40	0.0	0.03	10.95	0.00	1.207	5.39	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110473	9585	71	1526	110	0	0	logfile
✘	7P7T	13244	2022-07-09	2021-07-20	2.9	3.42	2.91	2.2	0.003	0.40	0.0	0.03	13.97	0.00	0.923	4.50	0.66	2.6	97.4	0.0	0.93	0.89	0.91	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149080	6097	68	4697	307	1	0	logfile
✔	6W18	21503	2022-07-03	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.79	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.1	0.007	0.90	0.0	0.05	13.19	0.01	2.028	17.62	0.09	12.6	87.4	0.0	-2.30	1.61	0.78	0.73	—	13151	1837	9	0	3	0	0	logfile
✔	6U5S	20654	2022-07-06	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.005	0.49	0.0	0.04	13.55	0.00	2.091	7.11	0.00	4.2	95.8	0.0	-0.08	1.23	0.83	0.83	4.36	21461	1504	8	0	20	0	9755	logfile
✘	7EoR	31228	2022-07-05	2021-04-22	4.0	4.40	—	4.1	0.002	0.41	0.0	0.04	8.96	0.00	1.192	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24204	3030	8	0	16	0	0	logfile
✔	7VXA	32173	2022-07-07	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	13.02	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.005	0.74	0.0	0.04	13.79	0.00	1.906	34.19	0.15	4.8	95.2	0.1	-0.61	1.69	0.65	0.72	1.08	46176	3795	4	0	0	0	16288	logfile
✘	7TD2	25821	2022-07-03	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.69	0.00	1.185	2.29	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13528	904	5	0	1	0	6632	logfile
✔	7VXB	32174	2022-07-06	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.40	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.009	0.97	1.0	0.04	14.21	0.01	2.006	15.11	0.18	3.7	96.2	0.1	-0.16	1.15	0.66	0.75	1.06	29888	3795	4	0	0	0	0	logfile
✘	7PiM	13442	2022-07-03	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	46.18	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11844	1412	12	0	8	0	524	logfile
✔	7WKD	32565	2022-07-04	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	7.01	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.69	0.01	1.894	14.99	0.42	4.0	96.0	0.0	0.31	1.03	0.73	0.75	2.46	17515	1120	6	0	0	0	8712	logfile
✔	7TB3	25791	2022-07-08	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.57	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.64	0.0	0.04	15.25	0.00	2.145	9.47	1.65	3.0	97.0	0.0	3.19	0.98	0.73	0.84	2.00	48000	5832	24	0	0	0	0	logfile
✘	7QN8	14070	2022-07-04	2021-12-20	3.1	3.39	—	3.2	0.002	0.41	0.0	0.04	8.22	0.00	1.323	4.17	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16755	1992	19	0	32	0	0	logfile
✔	6WCB	21605	2022-07-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	7PE8	13348	2022-07-06	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.56	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.70	0.00	2.206	7.16	0.17	3.6	96.4	0.0	0.72	0.49	0.80	0.83	1.84	29291	3832	8	0	3	0	0	logfile

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