Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CTT	30469	2021-12-01	2020-08-20	3.2	3.41	—	3.4	0.009	0.51	0.0	0.04	12.54	0.00	2.123	10.28	0.45	4.7	95.3	0.0	-2.80	0.71	0.76	2.65	3.4	0.003	0.61	0.0	0.04	14.51	0.00	2.179	12.78	0.79	4.4	95.5	0.1	-0.64	0.44	0.70	0.77	2.43	8912	1031	7	34	4	0	0	logfile
✔	7P54	13194	2021-12-01	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.98	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.82	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	6WB0	21583	2021-12-01	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.83	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.003	0.60	0.0	0.04	12.45	0.00	2.138	10.03	0.00	4.7	95.3	0.0	-1.45	1.28	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	6TKo	10515	2021-12-01	2019-11-28	3.3	3.40	3.22	3.6	0.005	0.51	0.0	0.04	12.62	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.005	0.75	0.0	0.04	15.16	0.01	2.016	15.87	0.47	2.6	97.4	0.0	0.05	1.73	0.77	0.81	2.52	8085	1052	5	0	1	0	0	logfile
✔	7KCL	22812	2021-12-02	2020-10-06	3.14	3.19	—	3.2	0.002	0.51	0.0	0.04	15.80	0.00	2.009	10.47	0.00	4.7	95.3	0.0	-0.08	0.76	0.84	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10057	1249	5	0	6	0	0	logfile
✔	7oZU	13135	2021-12-01	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.45	0.0	0.04	14.71	0.00	2.066	6.77	0.23	2.3	97.7	0.0	0.67	1.89	0.75	0.86	3.12	8408	991	6	21	3	0	0	logfile
✔	7E32	30974	2021-12-01	2021-02-07	2.9	3.21	—	3.1	0.003	0.52	0.0	0.04	12.57	0.00	1.970	5.64	0.10	2.1	97.9	0.0	2.17	0.62	0.74	2.89	3.1	0.004	0.61	0.0	0.04	15.63	0.00	2.058	9.68	1.46	3.5	96.5	0.0	0.47	0.53	0.64	0.80	3.11	8797	1117	5	0	2	0	0	logfile
✔	7KAQ	22780	2021-12-02	2020-10-01	4.0	4.57	4.07	4.2	0.003	0.52	0.0	0.04	11.53	0.00	2.158	7.51	0.00	2.3	97.7	0.0	-1.00	0.62	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10753	1346	7	0	56	0	0	logfile
✔	7FAS	31505	2021-12-02	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.05	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.34	0.00	2.180	9.50	0.09	5.0	95.0	0.0	1.02	0.44	0.73	0.75	0.92	10173	1229	1	0	0	0	0	logfile
✔	7NVV	12614	2021-12-01	2021-03-16	2.9	3.23	2.79	3.1	0.003	0.52	0.0	0.04	17.40	0.00	1.984	3.96	0.00	2.7	97.3	0.0	1.30	0.74	0.80	3.40	3.1	0.004	0.67	0.0	0.04	20.28	0.00	1.917	10.53	2.89	3.1	96.9	0.0	-0.09	0.66	0.74	0.83	3.10	9071	975	9	50	27	0	0	logfile
✔	7A8P	11679	2021-12-01	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.6	0.008	1.04	0.0	0.04	17.11	0.01	2.072	9.21	0.25	2.0	98.0	0.0	2.25	0.46	0.74	0.80	1.99	7305	911	1	0	1	0	0	logfile
✔	6Z3Y	11066	2021-12-01	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.35	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	7KAo	22778	2021-12-02	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.70	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.51	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	7JPT	22422	2021-12-02	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.51	0.10	8.4	91.6	0.0	-2.25	0.56	0.73	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	7KAH	22770	2021-12-02	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.003	0.58	0.0	0.04	14.66	0.00	2.172	5.59	0.54	3.0	97.0	0.0	1.88	1.26	0.69	0.87	1.89	10495	1349	6	0	0	0	0	logfile
✔	7AAP	11692	2021-12-01	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.52	0.0	0.04	14.63	0.00	2.181	5.75	0.81	2.0	98.0	0.0	0.43	0.82	0.80	0.90	4.36	9446	1120	9	21	7	0	0	logfile
✔	7DDo	30655	2021-12-01	2020-10-29	3.4	3.24	—	3.2	0.002	0.53	0.0	0.04	14.10	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.003	0.60	0.0	0.04	15.87	0.00	2.026	10.39	0.43	2.7	97.3	0.0	1.01	0.35	0.74	0.81	2.23	6468	791	4	0	5	0	0	logfile
✔	7KAi	22771	2021-12-02	2020-10-01	3.2	3.86	3.25	3.5	0.003	0.53	0.0	0.04	12.28	0.00	2.229	4.23	0.00	3.6	96.4	0.0	-1.28	0.67	0.85	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10718	1343	7	0	56	0	0	logfile
✔	7V8B	31796	2021-12-01	2021-08-22	3.2	3.85	—	3.6	0.002	0.53	0.0	0.04	14.54	0.00	2.308	6.09	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.003	0.59	0.0	0.04	15.76	0.00	2.247	5.86	0.29	5.2	94.7	0.1	0.43	1.15	0.80	0.88	2.36	6650	797	9	0	14	0	0	logfile
✔	7oNi	12995	2021-12-01	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.12	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.81	0.00	2.220	6.89	0.00	4.2	95.8	0.0	1.41	0.40	0.88	0.87	2.12	8840	1141	6	0	7	0	0	logfile

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