Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oJN	12956	2023-11-16	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.24	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.79	0.00	2.079	5.38	1.20	4.9	95.1	0.0	0.81	2.62	0.91	0.90	2.99	16991	2010	6	39	7	0	0	logfile
✔	6W18	21503	2023-11-15	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.37	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7Xo3	33335	2023-11-13	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	7TD2	25821	2023-11-15	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.89	0.00	2.175	2.14	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.003	0.48	0.0	0.04	14.65	0.00	1.964	5.31	0.14	3.0	97.0	0.0	1.66	1.22	0.54	0.79	3.15	13528	904	5	0	1	0	6632	logfile
✔	7PiM	13442	2023-11-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	8GS2	34218	2023-11-16	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.15	0.00	2.178	6.89	1.56	1.7	98.3	0.0	1.44	1.33	0.73	0.89	4.10	16935	1916	7	64	4	0	0	logfile
✔	7EU8	31309	2023-11-17	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	8.09	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.66	0.0	0.06	8.70	0.00	2.123	8.02	0.00	4.7	95.1	0.2	-0.32	1.42	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✘	5GW4	9540	2023-11-15	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7EoS	31229	2023-11-18	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	8.87	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.68	0.0	0.04	12.42	0.00	2.139	12.94	0.34	6.1	93.9	0.1	-0.43	1.30	0.90	0.83	1.30	24600	3106	8	0	18	0	0	logfile
✔	6QXF	4668	2023-11-21	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	7.01	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.63	0.0	0.04	14.05	0.00	2.106	11.03	0.10	2.3	97.6	0.1	1.79	2.77	0.89	0.86	1.53	34693	4088	30	50	8	0	0	logfile
✔	8E49	27884	2023-11-15	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.76	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.6	0.005	0.60	0.0	0.04	13.62	0.01	1.890	2.36	1.17	5.2	94.8	0.1	0.08	0.21	0.70	0.92	5.87	115871	1179	11	3016	1	0	41885	logfile
✔	8E3o	27869	2023-11-15	2022-08-17	1.99	2.75	2.52	2.6	0.006	0.42	0.0	0.05	12.90	0.02	1.955	2.37	0.74	4.6	95.1	0.3	-2.75	0.70	0.88	5.93	2.5	0.006	0.63	0.0	0.04	14.04	0.01	1.947	3.98	1.59	5.5	94.3	0.2	0.06	1.00	0.69	0.89	5.70	115702	1179	11	3015	2	0	41809	logfile
✔	8E3M	27868	2023-11-15	2022-08-17	2.25	2.92	2.58	2.7	0.005	0.42	0.0	0.07	13.14	0.02	1.973	2.01	1.27	4.0	96.0	0.0	0.83	0.71	0.91	5.18	2.7	0.005	0.62	0.0	0.04	14.24	0.01	1.964	3.51	1.27	5.1	94.8	0.2	0.20	0.25	0.69	0.90	5.59	115715	1179	11	3016	1	0	41815	logfile
✔	8DK1	27480	2023-11-17	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	12.85	0.00	2.260	3.98	1.49	3.6	96.4	0.0	2.59	0.62	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	7T8C	25744	2023-11-20	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7JLX	22383	2023-11-13	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	8BB1	15953	2023-11-16	2022-10-12	2.8	3.65	2.86	3.3	0.003	0.42	0.0	0.04	10.05	0.01	2.226	3.53	0.71	2.0	98.0	0.0	0.54	0.89	0.88	4.07	3.3	0.004	0.66	0.0	0.04	12.79	0.00	2.165	8.31	1.47	2.1	97.9	0.0	0.66	2.28	0.88	0.86	3.72	16168	2100	20	0	4	24	0	logfile
✔	7T4N	25681	2023-11-13	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7EBF	31053	2023-11-15	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	15.90	0.00	2.270	8.68	2.56	2.9	97.1	0.0	1.11	0.55	0.67	0.81	2.90	13052	1640	4	0	0	0	0	logfile
✔	8iP3	35630	2023-11-15	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.47	0.0	0.04	13.60	0.00	2.264	6.70	1.06	2.0	98.0	0.0	3.60	0.34	0.71	0.81	3.55	12868	1595	10	0	13	0	0	logfile

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