Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	7S3i	24825	2023-04-20	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	8EVU	28637	2023-04-22	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	7JGE	22324	2023-04-25	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.01	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.55	0.0	0.06	15.53	0.00	2.042	17.29	0.08	7.3	92.7	0.0	0.23	0.64	0.60	0.65	—	20315	1437	1	0	0	0	8508	logfile
✔	7R87	24310	2023-04-21	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.61	0.0	0.04	14.43	0.00	2.163	7.09	0.25	4.8	95.2	0.0	1.37	0.70	0.73	0.91	3.38	10793	1369	4	0	0	0	0	logfile
✔	8E4o	27894	2023-04-19	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7o73	12744	2023-04-27	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.41	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.005	0.72	0.0	0.04	16.75	0.00	1.931	12.06	0.44	3.5	96.5	0.0	0.24	1.31	0.80	0.82	1.76	73768	8880	43	130	22	0	0	logfile
✔	7UY6	26865	2023-04-24	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.003	0.52	0.0	0.04	17.90	0.00	2.205	5.26	1.63	2.2	97.8	0.1	1.20	1.19	0.70	0.83	2.85	18746	1847	9	170	1	0	0	logfile
✘	8A01	15044	2023-04-20	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	7WSE	32755	2023-04-22	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.63	0.0	0.04	15.09	0.00	2.026	7.56	1.73	2.7	97.3	0.0	0.62	1.41	0.60	0.79	2.12	6431	791	3	0	1	0	0	logfile
✔	7Z4K	14500	2023-04-23	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.69	0.0	0.04	16.91	0.00	2.146	21.08	0.25	4.4	95.6	0.0	0.02	1.90	0.88	0.80	0.62	14005	1360	4	138	0	0	0	logfile
✘	7WSF	32756	2023-04-23	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7170	879	3	0	1	0	0	logfile
✔	7XKH	33251	2023-04-27	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.61	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.003	0.51	0.0	0.04	14.24	0.00	2.214	2.58	0.00	2.4	97.6	0.0	0.83	1.12	0.87	0.91	2.74	25068	3257	9	0	1	0	0	logfile
✔	6T2V	10370	2023-04-26	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	8FM9	29289	2023-04-28	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.003	0.60	0.0	0.04	13.56	0.00	1.971	7.01	0.29	4.3	95.6	0.2	1.29	1.47	0.48	0.78	2.50	76764	7692	24	0	0	0	29916	logfile
✔	7EPD	31238	2023-04-24	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.004	0.64	0.0	0.04	14.15	0.00	2.224	13.87	0.45	5.3	94.7	0.0	0.04	1.20	0.75	0.74	1.44	10710	1569	2	0	0	0	0	logfile
✔	7WVV	32859	2023-04-20	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	7LZE	23605	2023-04-20	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.89	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.58	0.0	0.04	14.97	0.00	2.153	3.27	0.00	7.7	92.3	0.0	-0.99	1.12	0.77	0.85	2.67	7842	1011	9	0	9	0	0	logfile
✔	7Z4H	14497	2023-04-24	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.55	0.0	0.04	14.92	0.00	2.146	13.75	0.25	2.3	97.7	0.0	1.41	1.66	0.91	0.86	1.89	13900	1334	4	142	0	0	0	logfile
✔	7E33	30975	2023-04-20	2021-02-07	2.9	3.20	—	3.2	0.004	0.45	0.0	0.04	12.77	0.00	1.918	6.58	0.00	1.2	98.8	0.0	2.41	0.63	0.74	2.39	3.2	0.003	0.61	0.0	0.04	16.06	0.00	2.023	10.69	1.07	2.2	97.8	0.0	1.11	1.57	0.62	0.78	2.88	8538	1086	5	0	1	0	0	logfile

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