Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S3i	24825	2022-12-11	2021-09-07	2.51	2.95	2.28	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	6.17	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.002	0.48	0.0	0.04	16.10	0.00	2.163	6.60	1.04	1.7	98.3	0.0	2.05	0.93	0.76	0.88	3.45	8094	1023	5	0	0	0	0	logfile
✔	7WHJ	32501	2022-12-15	2021-12-30	3.27	2.36	—	2.1	0.002	0.44	0.0	0.04	8.76	0.01	2.217	6.93	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.003	0.67	0.0	0.05	14.00	0.00	2.088	10.68	0.50	6.7	93.3	0.0	-1.50	0.62	0.77	0.78	2.47	27788	3499	9	0	40	0	0	logfile
✔	7Z4K	14500	2022-12-13	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.47	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	4.0	0.004	0.70	0.0	0.04	16.96	0.00	2.136	22.49	0.57	5.6	94.4	0.0	-0.13	1.90	0.88	0.80	0.75	14005	1360	4	138	0	0	0	logfile
✔	7JGE	22324	2022-12-14	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.14	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.56	0.0	0.06	15.47	0.00	2.040	18.11	0.15	8.2	91.8	0.0	0.11	0.64	0.57	0.59	—	20315	1437	1	0	0	0	8508	logfile
✔	7Q8S	13865	2022-12-14	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.004	0.58	0.0	0.05	13.10	0.00	2.117	4.06	0.23	3.9	96.1	0.0	0.89	0.55	0.70	0.89	3.68	19665	2485	15	0	10	0	0	logfile
✔	6WB2	21585	2022-12-12	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.98	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.55	0.0	0.04	11.96	0.00	2.190	9.09	0.00	3.0	97.0	0.0	-0.28	0.63	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7S0G	24790	2022-12-13	2021-08-30	3.86	3.93	—	3.9	0.003	0.44	0.0	0.04	12.41	0.00	1.898	3.97	0.00	3.3	96.7	0.0	-1.90	0.49	0.72	2.15	3.9	0.003	0.53	0.0	0.04	15.85	0.00	1.942	9.81	0.13	4.5	95.5	0.0	0.10	2.29	0.49	0.72	1.97	13846	893	5	0	1	0	6854	logfile
✔	7R87	24310	2022-12-12	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.61	0.0	0.04	14.37	0.00	2.175	7.18	0.25	4.6	95.4	0.0	1.32	0.70	0.73	0.91	3.42	10793	1369	4	0	0	0	0	logfile
✔	8CYA	27072	2022-12-12	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.86	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.003	0.49	0.0	0.04	13.01	0.00	1.985	10.09	0.44	5.0	94.9	0.2	0.12	0.39	0.85	0.79	2.18	57833	3681	29	0	88	0	27935	logfile
✔	8CYB	27073	2022-12-11	2022-05-23	2.7	3.56	2.88	3.2	0.002	0.44	1.0	0.04	13.75	0.00	1.966	7.39	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.003	0.50	1.0	0.04	14.56	0.00	1.953	8.98	0.60	5.6	94.1	0.3	-0.44	0.39	0.80	0.78	2.08	54126	3432	29	0	114	0	25897	logfile
✔	7P0M	13148	2022-12-15	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.70	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.53	0.00	1.963	9.50	2.10	1.8	98.2	0.0	1.52	0.25	0.96	0.89	2.20	25185	3185	19	0	45	0	0	logfile
✔	7LBE	23252	2022-12-13	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.62	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.60	0.0	0.04	15.74	0.00	2.115	7.32	1.57	3.4	96.6	0.0	0.72	0.44	0.70	0.85	2.90	13511	1653	13	0	27	0	0	logfile
✔	7o73	12744	2022-12-14	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.41	0.00	1.888	4.37	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.005	0.72	0.0	0.04	16.76	0.00	1.945	12.01	0.30	3.5	96.5	0.0	0.24	1.31	0.79	0.81	1.70	73768	8880	43	130	22	0	0	logfile
✔	7QV5	14167	2022-12-11	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.41	0.00	2.460	1.08	0.00	2.1	97.9	0.0	-1.42	0.86	0.50	0.90	6.99	5562	342	27	0	18	0	2997	logfile
✘	7SZi	25567	2022-12-18	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	4.06	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8089	1038	4	0	0	0	0	logfile
✔	7XSK	33425	2022-12-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.66	0.0	0.04	18.19	0.01	1.742	27.91	0.00	0.0	0.0	0.0	—	1.08	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	6ZLG	11265	2022-12-18	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33008	4072	24	0	0	0	0	logfile
✔	7XKH	33251	2022-12-15	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.65	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.002	0.49	0.0	0.04	14.25	0.00	2.218	2.75	0.00	2.3	97.7	0.0	0.94	1.12	0.87	0.91	2.79	25068	3257	9	0	1	0	0	logfile
✔	8EVU	28637	2022-12-12	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.75	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.54	0.0	0.04	13.46	0.00	1.105	4.75	0.56	2.4	97.6	0.0	1.43	0.42	0.76	0.91	3.98	11902	1540	9	0	5	0	0	logfile
✔	8E4o	27894	2022-12-11	2022-08-18	3.43	3.87	3.39	3.6	0.003	0.44	0.0	0.03	11.04	0.00	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.6	0.003	0.50	0.0	0.03	13.27	0.00	2.035	7.01	0.04	2.6	97.4	0.0	2.75	0.72	0.72	0.80	1.90	53496	3588	8	0	4	0	26024	logfile

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