Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EW3	28641	2023-04-22	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.57	0.0	0.04	13.31	0.00	1.077	6.08	0.56	1.8	98.2	0.0	1.38	1.18	0.75	0.89	3.39	11902	1540	9	0	5	0	0	logfile
✔	7R88	24311	2023-04-21	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.003	0.58	0.0	0.04	15.10	0.00	2.222	6.59	0.25	4.4	95.6	0.0	1.28	1.34	0.71	0.88	2.75	10787	1368	4	0	0	0	0	logfile
✔	7S0F	24789	2023-04-23	2021-08-30	2.96	3.06	—	3.0	0.003	0.45	0.0	0.04	13.98	0.00	1.994	3.24	1.74	2.6	97.3	0.1	-1.72	0.49	0.74	2.57	3.0	0.004	0.55	0.0	0.04	16.82	0.00	2.134	5.83	3.21	3.5	96.4	0.1	0.82	1.33	0.51	0.79	2.45	13885	892	5	0	1	0	6887	logfile
✔	7JiC	22344	2023-04-20	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.66	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.003	0.68	0.0	0.04	14.28	0.00	2.237	10.88	0.35	3.4	96.6	0.0	0.17	2.01	0.69	0.81	2.57	5980	842	4	0	0	0	0	logfile
✔	7Yoo	33985	2023-04-21	2022-08-01	3.11	2.28	—	3.2	0.002	0.45	0.0	0.04	13.30	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.51	0.0	0.04	15.22	0.00	2.198	4.86	0.40	2.4	97.6	0.0	0.78	0.93	0.79	0.84	3.27	9188	1169	6	0	0	0	0	logfile
✔	7NKD	12438	2023-04-21	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	7EPD	31238	2023-04-24	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.004	0.64	0.0	0.04	14.15	0.00	2.224	13.87	0.45	5.3	94.7	0.0	0.04	1.20	0.75	0.74	1.44	10710	1569	2	0	0	0	0	logfile
✔	7LZE	23605	2023-04-20	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.89	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.58	0.0	0.04	14.97	0.00	2.153	3.27	0.00	7.7	92.3	0.0	-0.99	1.12	0.77	0.85	2.67	7842	1011	9	0	9	0	0	logfile
✔	7Z4C	14493	2023-04-24	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	15.32	0.00	2.232	8.05	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.003	0.58	0.0	0.04	16.67	0.00	2.163	12.60	0.08	2.9	97.1	0.0	1.05	0.96	0.91	0.84	1.31	14180	1357	4	148	0	0	0	logfile
✔	7WSH	32758	2023-04-22	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	9.90	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.003	0.59	0.0	0.04	15.50	0.00	2.123	9.77	2.01	1.8	98.2	0.0	1.20	0.84	0.72	0.85	3.53	6457	793	4	0	2	0	0	logfile
✔	7NVW	12615	2023-04-26	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	7WVV	32859	2023-04-20	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	7o75	12745	2023-04-27	2021-04-13	3.2	3.22	3.23	3.2	0.002	0.45	0.0	0.04	14.79	0.00	1.921	3.96	0.00	2.4	97.6	0.0	1.58	0.70	0.77	2.41	3.1	0.006	0.64	0.0	0.04	17.26	0.00	1.890	8.96	0.30	3.6	96.4	0.0	0.38	1.21	0.74	0.80	2.31	73885	8901	43	127	22	0	0	logfile
✔	7E33	30975	2023-04-20	2021-02-07	2.9	3.20	—	3.2	0.004	0.45	0.0	0.04	12.77	0.00	1.918	6.58	0.00	1.2	98.8	0.0	2.41	0.63	0.74	2.39	3.2	0.003	0.61	0.0	0.04	16.06	0.00	2.023	10.69	1.07	2.2	97.8	0.0	1.11	1.57	0.62	0.78	2.88	8538	1086	5	0	1	0	0	logfile
✔	7EoU	31231	2023-04-27	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	8.94	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.63	0.0	0.04	11.29	0.00	2.097	17.59	0.00	6.7	93.2	0.1	-0.41	1.64	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	7Z4H	14497	2023-04-24	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.55	0.0	0.04	14.92	0.00	2.146	13.75	0.25	2.3	97.7	0.0	1.41	1.66	0.91	0.86	1.89	13900	1334	4	142	0	0	0	logfile
✔	7QN8	14070	2023-04-24	2021-12-20	3.1	3.39	—	3.2	0.003	0.46	0.0	0.04	8.31	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.60	0.0	0.04	13.15	0.00	2.165	7.74	0.68	1.4	98.6	0.0	1.83	0.81	0.80	0.90	3.98	16755	1992	19	0	32	0	0	logfile
✔	7RZS	24776	2023-04-19	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7Z4i	14498	2023-04-23	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	15.03	0.00	2.236	7.91	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.004	0.51	0.0	0.04	16.22	0.00	2.153	9.27	0.17	2.2	97.8	0.0	1.51	2.26	0.87	0.84	2.63	13820	1338	5	137	2	0	0	logfile
✔	7ZZQ	15039	2023-04-25	2022-05-26	2.6	3.53	2.62	3.0	0.002	0.46	0.0	0.04	18.37	0.00	2.094	5.12	1.18	1.9	98.1	0.0	1.31	0.88	0.83	3.23	3.0	0.003	0.72	0.0	0.04	17.66	0.00	2.112	8.65	1.60	1.8	98.1	0.0	1.78	0.71	0.91	0.93	2.78	19527	2468	46	0	0	105	0	logfile

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