Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A05	15048	2023-08-09	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7SJ4	25153	2023-08-09	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.86	0.00	2.263	6.56	1.86	1.9	98.1	0.0	1.57	3.30	0.59	0.71	2.52	3909	481	4	0	0	24	0	logfile
✔	8FZ6	29604	2023-08-27	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	2.7	0.005	0.59	0.0	0.05	17.17	0.00	2.144	7.03	2.44	1.8	98.2	0.0	1.54	0.94	0.80	0.91	3.82	49780	6404	30	0	0	0	0	logfile
✔	7Y5G	33619	2023-08-09	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	8iP5	35632	2023-08-12	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.002	0.49	0.0	0.04	15.44	0.00	2.247	6.28	0.35	1.6	98.4	0.0	3.63	0.56	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	6PCT	20307	2023-08-17	2019-06-18	2.8	3.01	—	2.9	0.006	0.43	2.0	0.03	12.76	0.03	1.891	2.96	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.70	0.0	0.04	14.72	0.01	2.058	8.14	3.81	6.8	93.1	0.1	-1.02	0.41	0.68	0.88	4.35	72198	964	8	3015	1	0	0	logfile
✔	6XLB	22238	2023-08-12	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile
✔	8CQR	16799	2023-08-11	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.003	0.59	0.0	0.04	14.87	0.00	2.256	14.83	0.58	4.5	95.5	0.0	1.38	1.56	0.45	0.67	0.47	9708	618	6	0	0	0	5010	logfile
✔	6VX4	21429	2023-08-11	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.004	0.80	0.0	0.05	15.92	0.00	2.105	22.34	0.38	6.3	93.7	0.0	-1.35	1.49	0.84	0.83	2.39	9813	1265	9	0	0	0	0	logfile
✔	8EVU	28637	2023-08-12	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	7WK7	32561	2023-08-11	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.004	0.78	0.0	0.05	14.91	0.00	2.207	15.16	0.98	6.4	93.5	0.1	-1.05	0.77	0.79	0.80	2.02	10206	1330	4	0	2	0	0	logfile
✔	8JD2	36173	2023-08-12	2023-05-12	2.8	2.97	2.79	3.0	0.002	0.44	0.0	0.04	13.33	0.00	2.213	4.22	0.20	4.9	95.1	0.0	-0.38	0.66	0.79	3.20	3.0	0.003	0.55	0.0	0.04	14.64	0.00	2.137	6.33	2.73	6.3	93.7	0.0	-0.19	0.44	0.67	0.82	3.09	10730	1501	4	0	2	0	0	logfile
✔	7UY6	26865	2023-08-15	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.003	0.52	0.0	0.04	17.90	0.00	2.205	5.26	1.63	2.2	97.8	0.1	1.20	1.19	0.70	0.83	2.85	18746	1847	9	170	1	0	0	logfile
✔	7XKH	33251	2023-08-18	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.61	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.003	0.51	0.0	0.04	14.24	0.00	2.214	2.58	0.00	2.4	97.6	0.0	0.83	1.12	0.87	0.91	2.74	25068	3257	9	0	1	0	0	logfile
✔	7o73	12744	2023-08-18	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.41	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.005	0.72	0.0	0.04	16.75	0.00	1.931	12.06	0.44	3.5	96.5	0.0	0.24	1.31	0.80	0.82	1.76	73768	8880	43	130	22	0	0	logfile
✔	7WSE	32755	2023-08-12	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.63	0.0	0.04	15.09	0.00	2.026	7.56	1.73	2.7	97.3	0.0	0.62	1.41	0.60	0.79	2.12	6431	791	3	0	1	0	0	logfile
✔	6WB2	21585	2023-08-10	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	8BFB	16019	2023-08-09	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.008	0.62	0.0	0.05	17.53	0.00	2.364	6.10	0.00	2.8	97.2	0.0	-3.12	1.03	0.52	0.86	7.13	2860	380	10	0	0	0	0	logfile
✔	8E4o	27894	2023-08-09	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7S0G	24790	2023-08-13	2021-08-30	3.86	3.93	—	3.9	0.003	0.44	0.0	0.04	12.41	0.00	1.898	3.75	0.00	3.3	96.7	0.0	-1.90	0.49	0.72	2.15	3.9	0.003	0.54	0.0	0.04	15.92	0.00	1.940	10.17	0.40	4.4	95.6	0.0	0.02	2.30	0.48	0.72	2.04	13846	893	5	0	1	0	6854	logfile

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