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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2024-03-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BL6 | 12219 | 2024-03-19 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 22.70 | 0.00 | 2.117 | 10.95 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.03 | 23.88 | 0.00 | 1.985 | 24.44 | 1.27 | 6.9 | 93.0 | 0.1 | -1.13 | 3.11 | 0.94 | 0.84 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 7B0Y | 11972 | 2024-03-24 | 2020-11-23 | 3.6 | 3.87 | 3.41 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 17.19 | 0.00 | 1.954 | 4.30 | 0.02 | 2.1 | 97.9 | 0.0 | -2.96 | 0.75 | 0.78 | 2.05 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 18.89 | 0.00 | 2.017 | 11.26 | 1.95 | 4.5 | 95.5 | 0.0 | -0.12 | 1.23 | 0.75 | 0.78 | 1.75 | 43792 | 4745 | 31 | 274 | 9 | 0 | 0 | logfile |
✔ | 7U1E | 26299 | 2024-03-17 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 12.91 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 12.47 | 0.00 | 2.150 | 12.07 | 0.00 | 4.9 | 95.1 | 0.0 | 0.07 | 0.59 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 7T4N | 25681 | 2024-03-11 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.5 | 0.002 | 0.47 | 0.0 | 0.04 | 16.41 | 0.00 | 2.285 | 5.09 | 1.53 | 1.3 | 98.7 | 0.0 | 1.56 | 0.20 | 0.66 | 0.87 | 3.51 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8J8C | 36067 | 2024-03-15 | 2023-05-01 | 2.69 | 3.48 | 2.80 | 3.3 | 0.002 | 0.42 | 0.0 | 0.04 | 8.08 | 0.00 | 2.250 | 4.72 | 0.48 | 4.6 | 95.4 | 0.0 | 0.89 | 0.81 | 0.87 | 4.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 2.044 | 8.11 | 0.88 | 5.1 | 94.9 | 0.0 | 0.92 | 1.29 | 0.80 | 0.86 | 3.79 | 11650 | 1434 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i9U | 35284 | 2024-03-12 | 2023-02-07 | 3.1 | 3.25 | 3.24 | 3.3 | 0.001 | 0.42 | 0.0 | 0.04 | 15.88 | 0.00 | 2.250 | 4.20 | 1.78 | 12.1 | 87.2 | 0.7 | -2.67 | 0.56 | 0.55 | 0.11 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.77 | 0.00 | 2.177 | 5.95 | 2.02 | 5.5 | 94.4 | 0.1 | -0.46 | 0.71 | 0.69 | 0.74 | 0.59 | 65141 | 8483 | 28 | 0 | 10 | 0 | 0 | logfile |
✔ | 8SHS | 40493 | 2024-03-16 | 2023-04-14 | 2.66 | 3.50 | 2.78 | 3.3 | 0.002 | 0.42 | 0.0 | 0.04 | 8.94 | 0.00 | 2.309 | 5.02 | 0.50 | 1.2 | 98.8 | 0.0 | 1.56 | 0.85 | 0.81 | 3.60 | 3.3 | 0.004 | 0.47 | 0.0 | 0.04 | 13.64 | 0.00 | 2.271 | 4.35 | 0.82 | 1.8 | 98.2 | 0.0 | 1.57 | 0.46 | 0.78 | 0.85 | 3.86 | 15156 | 1976 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BHB | 16051 | 2024-03-20 | 2022-10-30 | 2.54 | 3.17 | 2.64 | 3.0 | 0.003 | 0.42 | 0.0 | 0.04 | 7.20 | 0.02 | 2.149 | 2.09 | 0.00 | 0.9 | 99.1 | 0.0 | 2.13 | 0.73 | 0.88 | 5.71 | 3.0 | 0.003 | 0.46 | 0.0 | 0.04 | 12.74 | 0.00 | 2.272 | 2.35 | 1.34 | 2.3 | 97.7 | 0.0 | 2.27 | 0.65 | 0.72 | 0.88 | 5.11 | 27250 | 1680 | 15 | 0 | 10 | 65 | 13415 | logfile |
✔ | 7EU8 | 31309 | 2024-03-17 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.10 | 8.95 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.002 | 0.64 | 0.0 | 0.06 | 8.96 | 0.00 | 2.120 | 8.02 | 0.00 | 4.6 | 95.2 | 0.2 | -0.29 | 1.41 | 0.79 | 0.70 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7EBF | 31053 | 2024-03-15 | 2021-03-09 | 2.63 | 2.31 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 11.01 | 0.00 | 2.294 | 5.76 | 2.11 | 2.0 | 98.0 | 0.0 | 1.61 | 0.65 | 0.78 | 2.64 | 2.3 | 0.005 | 0.60 | 0.0 | 0.04 | 15.95 | 0.00 | 2.240 | 9.84 | 4.14 | 3.1 | 96.9 | 0.0 | 0.77 | 0.54 | 0.67 | 0.81 | 3.23 | 13052 | 1640 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oRB | 17119 | 2024-03-25 | 2023-04-13 | 3.25 | 3.32 | 3.30 | 3.3 | 0.002 | 0.42 | 0.0 | 0.04 | 7.78 | 0.00 | 2.322 | 3.83 | 0.47 | 4.1 | 95.9 | 0.0 | 1.51 | 0.76 | 0.77 | 2.18 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 12.98 | 0.00 | 2.323 | 6.38 | 2.49 | 2.6 | 97.0 | 0.4 | 0.88 | 1.78 | 0.77 | 0.80 | 2.58 | 45984 | 5928 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WU9 | 32824 | 2024-03-11 | 2022-02-07 | 3.375 | 3.51 | 3.21 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 13.28 | 0.00 | 2.137 | 6.33 | 0.00 | 3.0 | 97.0 | 0.0 | 1.21 | 0.71 | 0.82 | 3.04 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.36 | 0.00 | 2.208 | 7.68 | 2.44 | 2.4 | 97.6 | 0.0 | 1.17 | 0.78 | 0.69 | 0.84 | 2.26 | 7369 | 1030 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TTB | 41604 | 2024-03-18 | 2023-08-13 | 2.77 | 3.26 | 2.76 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 7.77 | 0.00 | 1.428 | 3.70 | 0.00 | 1.6 | 98.4 | 0.0 | 1.83 | 0.83 | 0.87 | 5.03 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 11.55 | 0.00 | 1.975 | 4.88 | 0.41 | 2.1 | 97.9 | 0.0 | 1.20 | 1.02 | 0.84 | 0.88 | 4.52 | 21905 | 1376 | 5 | 0 | 2 | 0 | 10903 | logfile |
✔ | 7EoS | 31229 | 2024-03-19 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.002 | 0.42 | 0.0 | 0.04 | 9.75 | 0.00 | 2.254 | 6.49 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.002 | 0.65 | 0.0 | 0.04 | 12.37 | 0.00 | 2.048 | 12.13 | 1.93 | 5.5 | 94.4 | 0.1 | -0.39 | 1.68 | 0.90 | 0.82 | 1.19 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8HK3 | 34843 | 2024-03-11 | 2022-11-24 | 3.2 | 2.28 | 3.11 | 2.1 | 0.002 | 0.42 | 0.0 | 0.04 | 6.31 | 0.00 | 2.069 | 3.40 | 0.11 | 0.9 | 99.1 | 0.0 | -1.02 | 0.74 | 0.73 | 3.34 | 2.1 | 0.003 | 0.57 | 0.0 | 0.04 | 13.55 | 0.00 | 2.146 | 6.74 | 2.45 | 3.0 | 97.0 | 0.0 | 0.97 | 1.21 | 0.77 | 0.79 | 3.00 | 8746 | 1135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK1 | 27480 | 2024-03-18 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 12.80 | 0.00 | 2.259 | 4.00 | 1.10 | 3.7 | 96.3 | 0.0 | 2.59 | 0.63 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iP3 | 35630 | 2024-03-15 | 2023-03-14 | 2.6 | 3.21 | 2.64 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 10.76 | 0.00 | 2.255 | 5.46 | 0.00 | 1.9 | 98.1 | 0.0 | 3.79 | 0.76 | 0.84 | 3.68 | 3.0 | 0.003 | 0.47 | 0.0 | 0.04 | 13.72 | 0.00 | 2.265 | 6.81 | 1.20 | 1.9 | 98.1 | 0.0 | 3.60 | 0.32 | 0.71 | 0.81 | 3.66 | 12868 | 1595 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 6QXF | 4668 | 2024-03-22 | 2019-03-07 | 3.6 | 4.31 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.04 | 11.23 | 0.00 | 2.203 | 7.01 | 0.73 | 2.2 | 97.7 | 0.1 | -1.19 | 0.90 | 0.86 | 1.38 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 14.34 | 0.00 | 2.100 | 11.33 | 1.17 | 2.4 | 97.5 | 0.1 | 1.85 | 2.77 | 0.89 | 0.86 | 1.61 | 34693 | 4088 | 30 | 50 | 8 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2024-03-10 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |