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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6D00 | 7782 | 2021-01-07 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 3.91 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 12.86 | 0.00 | 2.106 | 12.55 | 0.00 | 2.9 | 97.1 | 0.0 | -0.04 | 1.93 | 0.83 | 0.67 | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2021-01-06 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 19.72 | 0.01 | 2.050 | 32.35 | 0.00 | 17.6 | 81.1 | 1.3 | -4.88 | 2.46 | 0.80 | 0.65 | 0.38 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2021-01-08 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.03 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.004 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.094 | 18.43 | 0.02 | 5.5 | 94.5 | 0.1 | -0.44 | 3.01 | 0.68 | 0.68 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2021-01-08 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.70 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 12.29 | 0.00 | 2.069 | 16.32 | 0.03 | 4.3 | 95.6 | 0.1 | -0.11 | 1.96 | 0.75 | 0.69 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oAF | 3773 | 2021-01-06 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.21 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 12.89 | 0.00 | 2.145 | 14.26 | 0.00 | 4.7 | 95.3 | 0.0 | -0.39 | 3.58 | 0.72 | 0.72 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2021-01-06 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.75 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 10.04 | 0.00 | 2.091 | 14.04 | 0.00 | 8.5 | 91.5 | 0.0 | 0.58 | 0.85 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2021-01-05 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 23.93 | 0.01 | 1.967 | 73.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.88 | 0.77 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2021-01-08 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.79 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.21 | 0.00 | 2.109 | 12.75 | 0.01 | 3.8 | 96.1 | 0.1 | 0.02 | 1.90 | 0.64 | 0.60 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2021-01-08 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.83 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.75 | 0.0 | 0.05 | 11.99 | 0.00 | 2.070 | 20.09 | 0.01 | 4.4 | 95.6 | 0.0 | -0.37 | 2.43 | 0.82 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GW4 | 9540 | 2021-01-08 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.48 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 12.01 | 0.00 | 2.002 | 17.63 | 0.03 | 4.2 | 95.7 | 0.1 | 0.24 | 3.45 | 0.79 | 0.69 | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2021-01-05 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.85 | 0.0 | 0.04 | 12.16 | 0.01 | 2.070 | 25.16 | 0.10 | 7.7 | 92.2 | 0.1 | -1.02 | 2.18 | 0.46 | 0.58 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2021-01-08 | 2018-12-19 | 3.48 | 3.99 | — | 3.5 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.03 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 14.63 | 0.00 | 2.036 | 13.15 | 0.04 | 6.3 | 93.7 | 0.0 | -0.16 | 3.20 | 0.83 | 0.78 | 1.47 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2021-01-06 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 10.03 | 0.00 | 2.182 | 7.86 | 0.00 | 4.0 | 95.9 | 0.2 | -1.09 | 1.37 | 0.79 | 0.83 | 2.28 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2021-01-07 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.28 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 11.93 | 0.01 | 1.877 | 17.10 | 0.00 | 14.4 | 85.1 | 0.5 | -3.94 | 2.18 | 0.72 | 0.70 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 6NEQ | 9358 | 2021-01-08 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.27 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.60 | 0.0 | 0.03 | 14.69 | 0.00 | 2.078 | 10.65 | 0.02 | 4.9 | 95.1 | 0.1 | 0.00 | 2.10 | 0.84 | 0.83 | 1.60 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6ZGG | 11205 | 2021-01-06 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.79 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.72 | 0.0 | 0.04 | 9.76 | 0.00 | 2.111 | 11.36 | 0.00 | 6.0 | 93.9 | 0.0 | -1.00 | 1.45 | 0.87 | 0.83 | 1.34 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC8 | 4383 | 2021-01-06 | 2018-04-17 | 3.8 | 4.18 | — | 3.9 | 0.002 | 0.57 | 0.0 | 0.03 | 12.93 | 0.00 | 2.129 | 3.87 | 0.16 | 6.3 | 93.5 | 0.2 | -4.04 | 0.71 | 0.60 | 0.92 | 3.9 | 0.008 | 0.83 | 0.0 | 0.04 | 16.16 | 0.01 | 1.921 | 31.65 | 0.00 | 11.8 | 87.9 | 0.3 | -2.53 | 2.96 | 0.83 | 0.79 | 0.66 | 88884 | 3090 | 42 | 3016 | 6 | 42 | 0 | logfile |
✔ | 6V3D | 21033 | 2021-01-06 | 2019-11-25 | 2.95 | 3.39 | — | 3.2 | 0.002 | 0.46 | 0.0 | 0.03 | 14.48 | 0.01 | 1.698 | 5.90 | 0.04 | 2.8 | 97.1 | 0.1 | -1.93 | 0.85 | 0.86 | 2.47 | 3.2 | 0.006 | 0.67 | 0.0 | 0.04 | 15.32 | 0.01 | 1.817 | 6.92 | 0.08 | 4.8 | 95.1 | 0.1 | -0.64 | 1.20 | 0.86 | 0.89 | 3.16 | 89040 | 3117 | 45 | 3007 | 108 | 231 | 0 | logfile |
✔ | 6KLH | 0710 | 2021-01-06 | 2019-07-30 | 3.7 | 3.90 | — | 3.8 | 0.002 | 0.68 | 3.0 | 0.04 | 13.46 | 0.00 | 2.176 | 10.16 | 0.25 | 9.4 | 90.3 | 0.3 | -3.61 | 0.78 | 0.74 | 0.87 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 13.38 | 0.00 | 1.950 | 12.15 | 0.04 | 9.9 | 90.0 | 0.1 | -1.01 | 0.85 | 0.80 | 0.78 | 1.17 | 27569 | 3731 | 6 | 14 | 4 | 0 | 0 | logfile |
✔ | 6HD7 | 0202 | 2021-01-11 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.05 | 14.93 | 0.00 | 0.345 | 24.87 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | 3.3 | 0.009 | 0.82 | 0.0 | 0.05 | 17.26 | 0.01 | 1.981 | 19.11 | 0.03 | 7.8 | 91.8 | 0.4 | -1.43 | 2.23 | 0.76 | 0.86 | 2.14 | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |