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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7EoS | 31229 | 2023-02-25 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.001 | 0.40 | 0.0 | 0.04 | 9.12 | 0.00 | 2.254 | 6.49 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 12.64 | 0.00 | 2.106 | 15.01 | 0.30 | 6.6 | 93.3 | 0.1 | -0.26 | 2.26 | 0.90 | 0.83 | 1.47 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-02-22 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.001 | 0.39 | 0.0 | 0.04 | 7.78 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.21 | 0.00 | 2.210 | 11.27 | 0.00 | 3.3 | 96.7 | 0.0 | -0.05 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2023-02-27 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.75 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.20 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | 1.80 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-02-25 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-02-24 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-02-23 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-02-25 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-02-23 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.70 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2023-02-17 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 9.12 | 0.00 | 2.270 | 6.37 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.002 | 0.50 | 0.0 | 0.04 | 11.60 | 0.00 | 2.170 | 10.39 | 0.00 | 2.6 | 97.4 | 0.0 | 0.62 | 0.58 | 0.90 | 0.85 | 2.17 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6ZGG | 11205 | 2023-02-25 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 11.39 | 0.00 | 2.111 | 11.42 | 0.36 | 5.9 | 94.0 | 0.0 | -0.97 | 1.78 | 0.87 | 0.83 | 1.19 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-02-23 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoD | 22972 | 2023-02-26 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.49 | 0.0 | 0.04 | 13.86 | 0.00 | 1.860 | 2.84 | 0.22 | 0.6 | 99.4 | 0.0 | 5.19 | 0.83 | 0.87 | 0.93 | 8.00 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✘ | 6PM5 | 20388 | 2023-02-21 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-02-17 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-02-20 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-02-22 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.03 | 18.97 | 0.00 | 2.000 | 29.45 | 0.91 | 18.5 | 80.5 | 1.1 | -5.04 | 2.32 | 0.80 | 0.65 | 0.86 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-02-23 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLP | 20371 | 2023-02-21 | 2019-07-01 | 3.3 | 3.51 | — | 3.8 | 0.001 | 0.46 | 0.0 | 0.04 | 7.10 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.44 | 0.72 | 3.32 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 13.63 | 0.00 | 2.098 | 10.70 | 0.19 | 3.6 | 96.4 | 0.0 | -0.94 | 1.22 | 0.44 | 0.75 | 2.95 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 5oAF | 3773 | 2023-02-23 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.004 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.119 | 16.11 | 0.00 | 4.4 | 95.5 | 0.1 | -0.37 | 3.72 | 0.73 | 0.73 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |