Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2021-08-07	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	7EoS	31229	2021-08-09	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.51	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.67	0.0	0.04	12.78	0.00	2.091	14.40	0.11	6.7	93.3	0.1	-0.45	1.72	0.90	0.83	1.39	24600	3106	8	0	18	0	0	logfile
✔	6XGC	22180	2021-08-08	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.004	0.68	0.0	0.04	11.59	0.00	2.197	11.78	0.05	3.5	96.5	0.0	0.01	1.34	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6X33	22016	2021-08-09	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.19	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.67	0.0	0.04	11.75	0.00	2.108	9.44	0.12	4.1	95.9	0.0	0.15	0.72	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	7JSE	22451	2021-08-08	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.12	0.0	0.09	14.79	0.00	2.151	10.99	0.00	21.9	78.1	0.0	-2.77	2.79	0.69	0.70	—	13288	3168	24	32	0	0	0	logfile
✔	7KoD	22972	2021-08-10	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.81	0.00	1.878	1.88	0.11	0.9	99.1	0.0	5.24	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	6HD5	0201	2021-08-07	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	6PM5	20388	2021-08-08	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.03	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.05	14.12	0.00	2.287	5.75	0.47	3.3	96.7	0.0	-0.20	1.12	0.57	0.85	3.95	13975	1735	15	0	15	0	0	logfile
✔	6PLP	20371	2021-08-08	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.63	0.0	0.04	13.63	0.01	2.085	10.07	0.39	3.0	97.0	0.0	-0.84	1.80	0.50	0.79	2.65	14240	1730	15	0	20	0	0	logfile
✔	6X35	22018	2021-08-09	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.80	2.0	0.04	11.60	0.01	1.614	11.87	0.01	4.1	95.9	0.0	0.71	1.71	0.57	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6X32	22015	2021-08-09	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.007	0.72	3.0	0.04	13.43	0.01	2.158	7.74	0.26	2.8	97.2	0.0	0.78	1.68	0.60	0.73	1.78	114280	14744	16	0	1416	0	0	logfile
✔	6PLQ	20372	2021-08-08	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.8	0.004	0.87	0.0	0.05	14.71	0.01	2.123	13.23	0.32	4.3	95.7	0.0	-1.02	2.46	0.76	0.84	2.17	14240	1730	15	0	20	0	0	logfile
✔	7JLX	22383	2021-08-07	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6X34	22017	2021-08-13	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.73	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.66	0.0	0.04	9.74	0.00	2.039	14.09	0.00	4.8	95.2	0.0	0.36	1.04	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6NEQ	9358	2021-08-09	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.006	0.67	0.0	0.03	16.26	0.00	2.095	11.27	0.35	5.1	94.9	0.1	0.02	2.05	0.85	0.84	1.31	65776	5509	32	952	147	0	0	logfile
✔	6NF8	9362	2021-08-09	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.005	0.77	0.0	0.04	16.07	0.01	2.045	13.54	0.37	5.6	94.4	0.0	-0.36	3.21	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile
✔	5N6W	3595	2021-08-11	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	6ZGG	11205	2021-08-09	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.70	0.0	0.04	11.49	0.00	2.135	10.33	0.25	5.2	94.8	0.0	-0.79	1.45	0.87	0.83	1.21	25096	3207	3	0	0	0	0	logfile
✔	6XLD	22240	2021-08-08	2020-06-28	3.66	3.78	—	3.7	0.001	0.37	0.0	0.04	9.87	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.004	0.62	0.0	0.04	14.60	0.00	1.923	10.95	0.08	3.5	96.5	0.0	-0.45	1.40	0.80	0.81	2.44	10992	1349	5	0	4	0	0	logfile
✔	6XLC	22239	2021-08-07	2020-06-28	3.66	3.01	—	3.7	0.001	0.38	0.0	0.04	12.67	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.004	0.65	0.0	0.04	15.92	0.01	1.913	13.20	0.46	2.8	97.2	0.0	-0.39	1.48	0.72	0.75	2.05	9858	1212	4	0	4	0	0	logfile

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