Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D00	7782	2021-01-07	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.2	0.003	0.76	0.0	0.04	12.86	0.00	2.106	12.55	0.00	2.9	97.1	0.0	-0.04	1.93	0.83	0.67	—	38328	4824	12	0	12	0	0	logfile
✔	5G2X	3331	2021-01-06	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.77	0.0	0.04	19.72	0.01	2.050	32.35	0.00	17.6	81.1	1.3	-4.88	2.46	0.80	0.65	0.38	19072	487	3	704	0	0	0	logfile
✔	6KRE	0757	2021-01-08	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.03	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.80	0.0	0.05	12.53	0.00	2.094	18.43	0.02	5.5	94.5	0.1	-0.44	3.01	0.68	0.68	—	60321	7922	16	0	0	0	0	logfile
✔	6KS7	0759	2021-01-08	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.70	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.73	0.0	0.04	12.29	0.00	2.069	16.32	0.03	4.3	95.6	0.1	-0.11	1.96	0.75	0.69	—	62022	8131	16	0	0	0	0	logfile
✔	5oAF	3773	2021-01-06	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.21	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.69	0.0	0.04	12.89	0.00	2.145	14.26	0.00	4.7	95.3	0.0	-0.39	3.58	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	6K9L	9950	2021-01-06	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.003	0.69	0.0	0.04	10.04	0.00	2.091	14.04	0.00	8.5	91.5	0.0	0.58	0.85	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	5G2Y	3332	2021-01-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.00	0.0	0.05	23.93	0.01	1.967	73.15	0.00	0.0	0.0	0.0	—	3.27	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6KRD	0756	2021-01-08	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.69	0.0	0.04	12.21	0.00	2.109	12.75	0.01	3.8	96.1	0.1	0.02	1.90	0.64	0.60	—	61005	8006	16	0	0	0	0	logfile
✔	6KS8	0760	2021-01-08	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.75	0.0	0.05	11.99	0.00	2.070	20.09	0.01	4.4	95.6	0.0	-0.37	2.43	0.82	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	5GW4	9540	2021-01-08	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.76	0.0	0.04	12.01	0.00	2.002	17.63	0.03	4.2	95.7	0.1	0.24	3.45	0.79	0.69	—	64544	8446	16	0	0	0	0	logfile
✔	6HD5	0201	2021-01-05	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.85	0.0	0.04	12.16	0.01	2.070	25.16	0.10	7.7	92.2	0.1	-1.02	2.18	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	6NF8	9362	2021-01-08	2018-12-19	3.48	3.99	—	3.5	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.65	0.0	0.04	14.63	0.00	2.036	13.15	0.04	6.3	93.7	0.0	-0.16	3.20	0.83	0.78	1.47	65776	5509	32	952	147	0	0	logfile
✔	6MWQ	9277	2021-01-06	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.66	0.0	0.04	10.03	0.00	2.182	7.86	0.00	4.0	95.9	0.2	-1.09	1.37	0.79	0.83	2.28	22072	2873	8	0	0	0	0	logfile
✔	5N6W	3595	2021-01-07	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.003	0.71	0.0	0.04	11.93	0.01	1.877	17.10	0.00	14.4	85.1	0.5	-3.94	2.18	0.72	0.70	—	40752	2512	16	0	0	0	20032	logfile
✔	6NEQ	9358	2021-01-08	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.60	0.0	0.03	14.69	0.00	2.078	10.65	0.02	4.9	95.1	0.1	0.00	2.10	0.84	0.83	1.60	65776	5509	32	952	147	0	0	logfile
✔	6ZGG	11205	2021-01-06	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.72	0.0	0.04	9.76	0.00	2.111	11.36	0.00	6.0	93.9	0.0	-1.00	1.45	0.87	0.83	1.34	25096	3207	3	0	0	0	0	logfile
✔	6GC8	4383	2021-01-06	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.87	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.008	0.83	0.0	0.04	16.16	0.01	1.921	31.65	0.00	11.8	87.9	0.3	-2.53	2.96	0.83	0.79	0.66	88884	3090	42	3016	6	42	0	logfile
✔	6V3D	21033	2021-01-06	2019-11-25	2.95	3.39	—	3.2	0.002	0.46	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.006	0.67	0.0	0.04	15.32	0.01	1.817	6.92	0.08	4.8	95.1	0.1	-0.64	1.20	0.86	0.89	3.16	89040	3117	45	3007	108	231	0	logfile
✔	6KLH	0710	2021-01-06	2019-07-30	3.7	3.90	—	3.8	0.002	0.68	3.0	0.04	13.46	0.00	2.176	10.16	0.25	9.4	90.3	0.3	-3.61	0.78	0.74	0.87	3.8	0.003	0.75	0.0	0.04	13.38	0.00	1.950	12.15	0.04	9.9	90.0	0.1	-1.01	0.85	0.80	0.78	1.17	27569	3731	6	14	4	0	0	logfile
✔	6HD7	0202	2021-01-11	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.05	14.93	0.00	0.345	24.87	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.009	0.82	0.0	0.05	17.26	0.01	1.981	19.11	0.03	7.8	91.8	0.4	-1.43	2.23	0.76	0.86	2.14	141153	7514	52	3767	234	0	0	logfile

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