Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X34	22017	2021-05-05	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.73	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.004	0.69	0.0	0.04	9.85	0.00	2.078	16.42	0.00	5.6	94.4	0.0	0.07	1.04	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6KS8	0760	2021-05-07	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.74	0.0	0.04	11.89	0.00	2.048	17.59	0.03	3.9	96.0	0.0	-0.29	2.03	0.82	0.76	—	61943	8120	16	0	0	0	0	logfile
✔	6X32	22015	2021-05-06	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.005	0.70	0.0	0.04	13.49	0.01	2.121	8.75	0.43	3.3	96.7	0.0	0.57	1.69	0.59	0.73	1.83	114280	14744	16	0	1416	0	0	logfile
✔	7JLX	22383	2021-05-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	6.71	0.00	2.307	8.03	0.00	15.2	84.8	0.0	-1.73	2.43	0.51	0.54	—	3288	664	4	0	0	0	0	logfile
✘	5G2X	3331	2021-05-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19072	487	3	704	0	0	0	logfile
✔	6K9L	9950	2021-05-05	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.003	0.70	0.0	0.04	10.09	0.00	2.100	13.29	0.00	8.5	91.5	0.0	0.44	1.84	0.85	0.76	—	30601	5103	2	0	0	0	0	logfile
✔	6PLP	20371	2021-05-04	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.64	0.0	0.04	13.82	0.01	2.104	11.16	0.19	2.9	97.1	0.0	-0.87	0.81	0.42	0.72	3.02	14240	1730	15	0	20	0	0	logfile
✔	7JSH	22454	2021-05-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.003	1.03	0.0	0.04	12.68	0.00	2.049	9.94	0.00	19.1	80.7	0.2	-4.35	6.22	0.74	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	6PLQ	20372	2021-05-04	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.005	0.93	0.0	0.05	15.07	0.00	2.064	15.06	0.58	5.9	94.1	0.0	-1.61	2.46	0.75	0.84	2.50	14240	1730	15	0	20	0	0	logfile
✔	7JSE	22451	2021-05-04	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.10	0.0	0.09	14.72	0.00	2.167	9.64	0.00	19.6	80.4	0.0	-2.55	2.76	0.74	0.72	—	13288	3168	24	32	0	0	0	logfile
✔	7KoD	22972	2021-05-03	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.87	0.00	1.855	1.87	0.08	0.9	99.1	0.0	5.18	0.59	0.88	0.94	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	5G2Y	3332	2021-05-04	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.6	0.007	1.00	0.0	0.05	24.02	0.01	1.984	73.74	0.00	0.0	0.0	0.0	—	3.29	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6KRD	0756	2021-05-07	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.004	0.76	0.0	0.05	12.53	0.00	2.019	15.75	0.01	5.1	94.8	0.1	-0.44	3.29	0.67	0.67	—	61005	8006	16	0	0	0	0	logfile
✔	6KRE	0757	2021-05-07	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.03	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.74	0.0	0.05	12.37	0.00	2.020	15.66	0.00	4.4	95.6	0.1	-0.17	2.98	0.68	0.67	—	60321	7922	16	0	0	0	0	logfile
✘	6PM5	20388	2021-05-04	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.03	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	6XGC	22180	2021-05-04	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.004	0.68	0.0	0.04	11.77	0.00	2.103	11.75	0.05	5.0	95.0	0.0	-0.14	1.35	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6X35	22018	2021-05-06	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.63	0.0	0.04	11.71	0.00	1.840	7.81	0.01	3.3	96.7	0.0	0.97	1.70	0.55	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2021-05-06	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.19	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.65	0.0	0.04	11.85	0.00	2.117	8.64	0.00	3.8	96.2	0.0	0.26	0.70	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6KS7	0759	2021-05-07	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.70	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.75	0.0	0.04	12.48	0.00	2.059	16.62	0.03	4.3	95.7	0.0	-0.40	2.39	0.76	0.71	—	62022	8131	16	0	0	0	0	logfile
✔	5GW4	9540	2021-05-07	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.77	0.0	0.05	12.02	0.00	1.919	15.73	0.06	3.9	96.0	0.1	0.23	3.45	0.75	0.62	—	64544	8446	16	0	0	0	0	logfile

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