Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7ZR8	14886	2022-11-29	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✔	7DoU	30800	2022-11-29	2020-12-17	3.0	3.06	—	3.1	0.003	0.67	0.0	0.05	12.73	0.00	2.164	9.00	0.00	9.8	90.2	0.0	-1.42	0.47	0.82	2.63	3.1	0.005	0.74	0.0	0.05	18.53	0.00	2.211	10.04	2.83	8.5	91.5	0.0	-0.98	1.37	0.49	0.85	2.42	2841	372	3	0	0	0	0	logfile
✔	7WS2	32741	2022-11-29	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.67	0.0	0.05	15.31	0.00	2.124	9.67	0.27	6.4	93.6	0.0	-1.84	0.48	0.69	0.82	3.35	3343	431	3	0	0	0	0	logfile
✔	6WM0	21846	2022-11-29	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.64	0.0	0.04	16.30	0.00	2.226	7.39	0.47	3.0	97.0	0.0	3.21	2.37	0.73	0.81	2.04	4105	510	3	0	5	0	0	logfile
✔	7P6D	13226	2022-11-29	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.009	0.80	0.0	0.06	13.82	0.00	2.022	7.32	0.81	13.6	86.0	0.4	-3.19	2.42	0.47	0.83	4.68	4340	575	5	0	0	0	0	logfile
✔	7Z4Z	14511	2022-11-29	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	3.9	0.003	0.84	0.0	0.05	16.82	0.00	2.218	11.94	0.22	13.8	85.9	0.3	-1.64	0.79	0.58	0.73	—	4817	673	4	0	0	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7V22	31634	2022-11-29	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.04	15.65	0.00	2.182	11.91	0.00	12.1	87.5	0.4	-2.40	0.56	0.54	0.80	3.45	1958	240	1	0	0	0	0	logfile
✔	7TPG	26054	2022-11-29	2022-01-25	3.23	3.54	—	3.5	0.003	1.06	0.0	0.04	13.88	0.00	2.078	7.39	0.20	3.5	96.5	0.0	0.79	0.63	0.78	2.30	3.5	0.003	0.56	0.0	0.04	16.05	0.00	2.241	7.29	0.40	3.5	96.5	0.0	0.50	2.28	0.63	0.81	2.02	4777	626	4	0	1	0	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7U16	26279	2022-11-29	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	6Y5L	10701	2022-11-29	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	6.30	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.54	0.01	2.257	20.21	0.00	3.9	96.1	0.0	-0.04	1.09	0.69	0.74	0.99	3855	477	9	0	3	0	0	logfile
✔	7WLC	32581	2022-11-29	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.80	0.0	0.05	16.30	0.00	2.168	18.87	0.84	8.7	91.3	0.0	-1.89	0.52	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7RTV	24690	2022-11-29	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7U10	26273	2022-11-29	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.03	0.00	2.205	12.01	2.91	7.5	92.5	0.0	-3.34	2.75	0.28	0.68	3.19	3429	405	6	0	12	0	0	logfile
✔	7WED	32447	2022-11-29	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.003	0.71	0.0	0.04	16.62	0.00	2.245	8.04	1.09	8.0	92.0	0.0	-1.22	1.14	0.56	0.78	2.03	3358	431	3	0	0	0	0	logfile
✔	7LTo	23517	2022-11-29	2021-02-19	3.2	3.37	—	3.3	0.003	0.71	0.0	0.05	15.41	0.00	2.232	11.24	3.25	9.1	90.9	0.0	-4.26	0.71	0.77	2.73	3.3	0.003	0.72	0.0	0.04	16.89	0.00	2.090	8.35	1.42	7.5	92.5	0.0	-0.66	1.17	0.72	0.79	2.36	4754	605	2	0	0	0	0	logfile
✔	7P9U	13266	2022-11-29	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.23	0.00	2.129	13.05	0.93	6.4	93.2	0.4	0.32	0.42	0.52	0.76	1.01	3943	503	2	0	0	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	6WQK	21871	2022-11-29	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile

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