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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KoD | 22972 | 2024-03-14 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.50 | 0.0 | 0.04 | 13.83 | 0.00 | 1.855 | 2.71 | 0.25 | 0.6 | 99.4 | 0.0 | 5.20 | 0.58 | 0.87 | 0.93 | 8.06 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 8FEL | 29032 | 2024-03-14 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.54 | 0.0 | 0.04 | 13.03 | 0.00 | 2.273 | 10.05 | 0.00 | 4.6 | 95.4 | 0.0 | -0.37 | 1.69 | 0.73 | 0.44 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i4H | 35173 | 2024-03-11 | 2023-01-19 | 3.81 | 3.30 | 3.92 | 3.7 | 0.001 | 0.43 | 0.0 | 0.04 | 9.23 | 0.00 | 2.262 | 10.14 | 5.85 | 7.4 | 92.6 | 0.0 | -4.65 | 0.69 | 0.64 | 1.02 | 3.6 | 0.004 | 0.90 | 0.0 | 0.05 | 14.40 | 0.01 | 2.151 | 22.47 | 5.71 | 14.5 | 85.5 | 0.0 | -3.14 | 1.85 | 0.72 | 0.69 | 1.32 | 6539 | 833 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oHD | 16880 | 2024-03-23 | 2023-03-21 | 3.1 | 3.56 | 3.03 | 3.2 | 0.001 | 0.31 | 0.0 | 0.03 | 21.90 | 0.00 | 1.823 | 2.53 | 0.46 | 1.7 | 98.3 | 0.0 | 2.80 | 0.90 | 0.91 | 3.55 | 3.2 | 0.004 | 0.49 | 0.0 | 0.03 | 21.88 | 0.00 | 1.835 | 5.53 | 1.61 | 2.3 | 97.6 | 0.0 | 1.60 | 0.29 | 0.90 | 0.93 | 3.68 | 146745 | 8224 | 62 | 3742 | 225 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2024-03-10 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.009 | 0.69 | 0.0 | 0.06 | 19.10 | 0.00 | 2.285 | 4.76 | 4.65 | 9.4 | 90.6 | 0.0 | -1.72 | 1.12 | 0.51 | 0.89 | 6.72 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PHP | 17670 | 2024-03-24 | 2023-06-20 | 2.56 | 2.99 | 2.40 | 2.8 | 0.001 | 0.32 | 0.0 | 0.04 | 12.91 | 0.00 | 2.357 | 1.69 | 0.00 | 1.5 | 98.5 | 0.0 | 1.55 | 0.77 | 0.89 | 3.59 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 15.67 | 0.00 | 2.173 | 6.09 | 1.71 | 2.0 | 98.0 | 0.0 | 1.80 | 1.35 | 0.76 | 0.91 | 3.20 | 40812 | 4968 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U1E | 26299 | 2024-03-17 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 12.91 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 12.47 | 0.00 | 2.150 | 12.07 | 0.00 | 4.9 | 95.1 | 0.0 | 0.07 | 0.59 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2024-03-19 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7LH3 | 23335 | 2024-03-15 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.71 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 10.57 | 0.00 | 2.271 | 9.94 | 0.00 | 2.4 | 97.6 | 0.0 | 1.82 | 1.10 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2024-03-24 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 11.33 | 0.01 | 1.844 | 23.01 | 0.00 | 16.5 | 82.9 | 0.6 | -3.97 | 1.95 | 0.72 | 0.73 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 6X33 | 22016 | 2024-03-12 | 2020-05-21 | 4.2 | 4.35 | — | 4.3 | 0.001 | 0.37 | 0.0 | 0.03 | 9.39 | 0.00 | 2.304 | 3.24 | 0.00 | 1.9 | 98.1 | 0.0 | -4.22 | 0.55 | 0.69 | — | 4.3 | 0.002 | 0.61 | 0.0 | 0.04 | 11.64 | 0.00 | 2.094 | 8.35 | 0.08 | 2.9 | 97.1 | 0.0 | 0.38 | 0.62 | 0.58 | 0.72 | — | 112372 | 14796 | 16 | 0 | 1436 | 0 | 0 | logfile |
✔ | 6X32 | 22015 | 2024-03-12 | 2020-05-21 | 3.8 | 3.75 | — | 3.9 | 0.001 | 0.36 | 0.0 | 0.03 | 7.99 | 0.00 | 2.266 | 3.27 | 0.00 | 1.4 | 98.6 | 0.0 | -3.72 | 0.56 | 0.69 | 2.26 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 13.13 | 0.00 | 2.125 | 8.65 | 2.35 | 2.9 | 97.1 | 0.0 | 0.59 | 1.67 | 0.60 | 0.73 | 1.88 | 114280 | 14744 | 16 | 0 | 1416 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2024-03-10 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 16.35 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.003 | 0.50 | 0.0 | 0.04 | 17.22 | 0.00 | 2.142 | 11.42 | 2.14 | 2.1 | 97.9 | 0.0 | 0.75 | 0.56 | 0.90 | 0.86 | 1.97 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2024-03-19 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2024-03-12 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 12.16 | 0.00 | 2.062 | 17.17 | 0.03 | 4.1 | 95.8 | 0.1 | -0.34 | 1.89 | 0.75 | 0.69 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2024-03-11 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 5oAF | 3773 | 2024-03-18 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.91 | 0.00 | 2.114 | 15.64 | 0.00 | 5.0 | 94.9 | 0.1 | -0.93 | 3.58 | 0.73 | 0.74 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2024-03-18 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 22.52 | 0.00 | 2.235 | 2.82 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 23.14 | 0.00 | 2.000 | 14.96 | 4.22 | 8.5 | 91.4 | 0.1 | -1.87 | 0.85 | 0.78 | 0.76 | 0.92 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 8GVC | 34290 | 2024-03-11 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.97 | 0.00 | 2.299 | 4.89 | 1.25 | 3.1 | 96.7 | 0.2 | 1.66 | 0.29 | 0.62 | 0.83 | 2.37 | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VLK | 32023 | 2024-03-21 | 2021-10-04 | 2.27 | 2.77 | — | 2.6 | 0.002 | 0.50 | 0.0 | 0.04 | 17.01 | 0.00 | 2.195 | 6.32 | 2.51 | 2.0 | 98.0 | 0.0 | 1.38 | 0.76 | 0.84 | 3.20 | 2.6 | 0.003 | 0.55 | 0.0 | 0.04 | 17.10 | 0.00 | 2.189 | 6.46 | 2.00 | 2.6 | 97.4 | 0.0 | 1.55 | 0.26 | 0.77 | 0.86 | 3.24 | 28774 | 3698 | 12 | 0 | 0 | 0 | 0 | logfile |