Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FEJ	29029	2023-08-11	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.56	0.0	0.04	12.24	0.00	2.204	9.64	0.00	6.1	93.7	0.2	-0.44	1.31	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8FEL	29032	2023-08-11	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	5N6W	3595	2023-08-25	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.003	0.69	0.0	0.04	11.38	0.01	1.946	14.52	0.13	11.9	87.4	0.7	-3.87	1.92	0.71	0.71	—	40752	2512	16	0	0	0	20032	logfile
✔	8C9A	16507	2023-08-15	2023-01-21	4.86	5.39	4.92	4.8	0.001	0.45	0.0	0.04	13.85	0.00	1.924	6.58	0.23	3.6	96.4	0.0	1.73	0.82	0.76	—	4.8	0.006	0.85	0.0	0.05	18.91	0.01	1.999	43.68	0.00	8.9	91.1	0.0	-2.30	2.13	0.85	0.85	—	18059	525	7	650	0	0	0	logfile
✔	7Xo2	33334	2023-08-09	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	8PHP	17670	2023-08-25	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.002	0.51	0.0	0.04	15.75	0.00	2.185	6.11	1.09	1.9	98.1	0.0	2.08	1.36	0.75	0.90	2.84	40812	4968	24	0	0	0	0	logfile
✔	6KRD	0756	2023-08-11	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	6KRE	0757	2023-08-11	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.71	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✔	8H8B	34541	2023-08-10	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	6X35	22018	2023-08-11	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6ZGG	11205	2023-08-18	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	6KS8	0760	2023-08-11	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6KS7	0759	2023-08-12	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	8DPi	27636	2023-08-10	2022-07-15	3.4	2.28	3.42	2.1	0.002	0.55	0.0	0.06	9.34	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.61	0.0	0.04	13.73	0.00	2.045	7.24	0.37	2.8	97.2	0.0	0.80	0.58	0.75	0.73	2.05	8150	1093	6	0	2	0	0	logfile
✔	7VLK	32023	2023-08-20	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.32	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.19	0.00	2.164	6.61	3.05	2.5	97.5	0.0	1.53	0.26	0.77	0.86	3.20	28774	3698	12	0	0	0	0	logfile
✔	8HR8	34963	2023-08-26	2022-12-15	3.3	3.38	3.32	3.3	0.002	0.46	1.0	0.04	14.94	0.00	2.116	9.71	0.02	3.0	97.0	0.0	-0.57	0.73	0.82	2.48	3.3	0.002	0.50	0.0	0.04	16.52	0.00	2.149	10.67	0.16	2.8	97.2	0.0	0.50	1.10	0.74	0.84	1.94	46688	5839	12	0	5	0	0	logfile
✔	7UiC	26543	2023-08-15	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.3	0.002	0.68	0.0	0.04	15.13	0.00	2.104	15.60	0.15	2.4	97.5	0.0	0.58	0.65	0.81	0.72	0.01	17303	2138	6	0	0	0	0	logfile
✔	6GC0	4379	2023-08-21	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.007	0.85	0.0	0.04	16.11	0.01	1.926	27.32	2.22	11.9	88.0	0.1	-2.44	2.62	0.78	0.77	1.09	84138	2950	28	2848	0	0	0	logfile
✔	7YCG	33738	2023-08-10	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.04	15.89	0.00	1.846	33.51	0.00	0.0	0.0	0.0	—	0.32	0.95	0.89	—	8661	0	2	404	4	0	0	logfile
✔	7V0X	26952	2023-08-09	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile

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