Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C8K	30306	2021-08-07	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.003	0.54	0.0	0.04	15.37	0.00	2.213	7.74	0.00	3.9	96.1	0.0	1.40	1.13	0.85	0.83	2.83	4853	596	3	0	6	0	0	logfile
✔	6ZQi	11364	2021-08-07	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.73	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.005	0.81	0.0	0.05	15.79	0.00	2.127	12.67	0.93	5.5	94.5	0.0	-0.60	0.76	0.69	0.80	1.15	5032	655	4	0	1	0	0	logfile
✔	6L54	0837	2021-08-09	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	60.56	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.012	0.89	2.0	0.04	14.06	0.01	1.943	68.40	0.30	11.6	88.4	0.1	-1.36	0.77	0.81	0.79	1.69	20387	2608	3	0	2	0	857	logfile
✔	6VRL	21370	2021-08-07	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	14.02	0.00	2.159	10.49	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.015	1.55	0.0	0.04	16.27	0.01	2.049	22.45	0.31	7.3	92.7	0.0	-1.28	0.77	0.50	0.70	1.48	6141	764	4	0	4	0	0	logfile
✔	6XJB	22205	2021-08-07	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.65	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.66	0.0	0.04	15.50	0.00	2.063	12.62	0.46	7.9	92.1	0.0	-1.38	1.84	0.88	0.86	2.30	10070	1277	1	0	0	0	0	logfile
✘	6NUD	0516	2021-08-09	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20831	2420	13	68	1	0	0	logfile
✔	6Y97	10733	2021-08-07	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.73	0.0	0.05	13.38	0.01	2.123	16.16	0.00	7.4	92.6	0.0	0.39	1.70	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6WB1	21584	2021-08-07	2020-03-26	4.7	4.87	—	4.6	0.002	0.51	0.0	0.04	12.49	0.00	2.204	6.87	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.004	0.68	0.0	0.04	13.31	0.00	2.117	13.47	0.00	5.3	94.7	0.0	-0.79	0.81	0.88	0.84	—	8235	944	4	75	0	0	0	logfile
✘	6WB2	21585	2021-08-07	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8407	946	4	75	0	0	0	logfile
✔	6FLP	4274	2021-08-09	2018-01-26	4.1	4.58	4.28	4.2	0.002	0.57	0.0	0.04	12.69	0.00	2.062	8.77	0.04	6.3	93.7	0.1	-3.10	0.85	0.83	—	4.2	0.007	0.82	0.0	0.05	15.18	0.00	2.135	18.04	0.00	11.5	88.4	0.1	-1.77	1.41	0.86	0.86	—	26512	3184	9	80	3	0	0	logfile
✘	6L53	0836	2021-08-08	2019-10-22	3.63	3.79	—	3.7	0.002	0.70	0.0	0.04	9.71	0.00	2.193	8.52	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✔	6T2V	10370	2021-08-09	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.74	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.006	0.82	0.0	0.04	15.92	0.00	2.057	20.79	0.21	5.6	94.4	0.0	-0.11	2.43	0.90	0.81	0.57	23826	2847	4	54	0	0	0	logfile
✔	6VRH	21368	2021-08-07	2020-02-07	3.3	3.68	3.56	3.6	0.002	0.53	0.0	0.04	12.92	0.00	2.212	9.75	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.59	0.0	0.04	15.08	0.00	2.144	10.49	0.31	5.7	94.3	0.0	-0.72	0.59	0.52	0.76	1.60	6142	764	4	0	5	0	0	logfile
✔	6RC8	4803	2021-08-10	2019-04-11	3.8	3.96	—	3.8	0.002	0.66	0.0	0.05	12.12	0.01	2.282	6.80	0.79	12.4	87.6	0.0	-5.76	0.68	0.86	2.14	3.8	0.004	0.82	0.0	0.05	14.25	0.00	2.041	9.90	0.42	10.5	89.5	0.0	-2.82	0.65	0.69	0.87	1.51	130152	16872	48	0	0	0	0	logfile
✔	6QXF	4668	2021-08-10	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	6.94	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.61	0.0	0.04	14.28	0.00	2.111	11.22	0.13	2.3	97.6	0.1	1.77	2.80	0.89	0.86	1.34	34693	4088	30	50	8	0	0	logfile
✔	7C79	30296	2021-08-09	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.76	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	2.9	0.006	0.85	1.0	0.04	16.35	0.01	2.065	12.38	2.53	6.7	93.2	0.0	-0.42	0.96	0.80	0.79	1.67	27324	2519	14	331	2	0	0	logfile
✔	6YDP	10778	2021-08-11	2020-03-20	3.0	3.11	3.00	3.1	0.002	0.50	0.0	0.03	15.87	0.00	1.147	8.21	1.48	3.7	96.2	0.0	-2.35	0.75	0.78	1.93	3.1	0.006	0.73	1.0	0.04	17.96	0.01	1.030	12.31	3.68	5.0	94.9	0.0	-0.41	1.57	0.80	0.87	2.15	179513	15179	122	2648	339	5	0	logfile
✔	7C7A	30297	2021-08-09	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.77	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.006	0.83	1.0	0.04	16.53	0.01	1.850	12.72	2.61	6.4	93.5	0.1	-0.28	0.94	0.85	0.82	1.31	27500	2519	16	339	4	0	0	logfile
✔	6ZQJ	11366	2021-08-08	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.29	0.00	2.286	6.10	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.005	0.90	0.0	0.05	13.82	0.00	2.115	14.07	0.06	6.7	93.3	0.0	-1.24	2.05	0.70	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	7A97	11687	2021-08-10	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.84	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.005	0.73	0.0	0.04	9.37	0.00	2.074	17.65	0.00	5.5	94.5	0.0	-0.98	2.61	0.90	0.84	—	34626	4373	5	0	0	0	0	logfile

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