Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JPT	22422	2022-05-13	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.87	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.82	0.10	8.4	91.6	0.0	-2.25	0.56	0.72	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	6VWN	21422	2022-05-17	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.15	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.68	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile
✔	6ZQi	11364	2022-05-12	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	6.43	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.86	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✘	6YV1	10940	2022-05-12	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6ZoJ	11320	2022-05-15	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile
✔	7C7A	30297	2022-05-15	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.79	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.008	0.90	1.0	0.04	16.43	0.01	1.702	13.67	2.74	6.7	93.3	0.0	-0.44	0.88	0.84	0.82	1.32	27500	2519	16	339	4	0	0	logfile
✔	7C8K	30306	2022-05-13	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.98	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.32	0.20	3.9	96.1	0.0	1.51	0.53	0.85	0.83	3.09	4853	596	3	0	6	0	0	logfile
✔	6GC8	4383	2022-05-16	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.91	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.005	0.72	0.0	0.04	15.79	0.01	1.574	21.78	0.32	9.0	90.9	0.1	-2.06	1.97	0.82	0.78	0.65	88884	3090	42	3016	6	42	0	logfile
✔	6V4U	21048	2022-05-12	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.003	0.72	0.0	0.04	13.40	0.01	2.190	11.62	0.20	11.9	88.1	0.0	-1.59	0.78	0.76	0.67	1.58	7074	1106	3	0	0	0	0	logfile
✔	7C79	30296	2022-05-15	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.80	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	2.9	0.010	1.02	1.0	0.04	16.54	0.01	1.652	15.13	2.35	7.5	92.4	0.0	-0.59	0.90	0.80	0.79	1.59	27324	2519	14	331	2	0	0	logfile
✔	6NUD	0516	2022-05-14	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.86	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.010	1.13	1.0	0.04	16.83	0.01	1.504	18.57	0.29	9.3	90.7	0.0	-3.09	1.67	0.73	0.76	2.01	20831	2420	13	68	1	0	0	logfile
✔	6GBZ	4378	2022-05-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.85	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.70	0.01	1.977	17.94	0.96	9.8	90.1	0.1	-1.94	0.85	0.78	0.77	0.96	86401	3074	29	2908	0	0	0	logfile
✔	6GC0	4379	2022-05-16	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.48	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	4.0	0.006	0.75	0.0	0.04	15.56	0.01	1.958	23.06	1.00	11.1	88.8	0.1	-2.13	2.61	0.78	0.76	1.15	84138	2950	28	2848	0	0	0	logfile
✔	6NUE	0519	2022-05-14	2019-01-31	3.3	3.58	—	3.6	0.002	0.47	0.0	0.04	11.15	0.00	2.214	5.51	0.34	15.3	82.3	2.4	-5.57	0.58	0.57	0.80	3.6	0.009	1.03	2.0	0.04	15.97	0.00	1.810	13.31	0.29	7.7	92.2	0.2	-3.01	1.14	0.70	0.78	1.65	20175	2412	12	40	1	0	0	logfile
✔	6HD7	0202	2022-05-18	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	25.04	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.79	0.0	0.04	17.84	0.01	1.953	18.84	0.71	7.3	92.3	0.4	-1.37	1.56	0.76	0.87	1.70	141153	7514	52	3767	234	0	0	logfile
✔	6Y5H	10697	2022-05-13	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	3.19	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.005	0.64	0.0	0.05	17.36	0.00	2.146	4.46	3.83	3.2	96.8	0.0	-0.48	1.11	0.77	0.87	3.53	11994	1470	18	0	33	0	0	logfile
✔	6ZQJ	11366	2022-05-13	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.29	0.00	2.286	6.57	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.87	0.0	0.05	13.96	0.00	2.139	12.94	0.00	5.6	94.4	0.0	-1.11	2.03	0.70	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	7NDC	12283	2022-05-16	2021-01-30	4.1	4.42	—	4.2	0.002	0.52	0.0	0.04	11.62	0.00	2.118	3.67	0.37	3.9	96.1	0.0	-0.43	0.83	0.75	—	4.2	0.003	0.59	0.0	0.04	12.14	0.00	2.100	9.52	0.03	3.6	96.4	0.0	0.30	1.80	0.85	0.79	—	30645	3852	27	0	54	0	0	logfile
✔	6LXE	30006	2022-05-13	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	17.23	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.80	0.0	0.04	14.68	0.01	2.206	22.77	0.00	9.7	90.3	0.0	-1.93	1.69	0.85	0.71	—	6519	813	4	0	2	0	0	logfile
✔	6LXD	30005	2022-05-13	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.47	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.77	0.0	0.04	15.09	0.00	2.121	19.79	0.58	9.2	90.8	0.0	-1.41	0.67	0.88	0.79	1.02	9435	963	5	72	2	0	0	logfile

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