Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7WDF	32437	2023-02-28	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.44	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.003	0.79	0.0	0.05	14.33	0.00	2.088	18.37	0.45	4.6	95.4	0.0	-0.96	1.62	0.76	0.71	0.54	31998	4101	7	0	0	0	0	logfile
✔	6T9L	10415	2023-02-22	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.005	0.68	0.0	0.04	25.18	0.00	1.945	9.77	0.37	3.5	96.5	0.0	0.77	0.84	0.84	0.84	1.37	18157	1532	18	290	8	0	0	logfile
✔	7PKN	13473	2023-02-23	2021-08-25	3.2	3.78	—	3.4	0.002	0.55	0.0	0.04	12.63	0.00	2.106	6.10	0.00	2.6	97.4	0.0	2.14	0.77	0.75	1.23	3.4	0.003	0.66	0.0	0.04	15.57	0.00	2.177	7.92	0.34	3.2	96.8	0.0	1.86	1.01	0.82	0.85	1.91	18616	2310	12	0	0	1	0	logfile
✔	7R87	24310	2023-02-19	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.71	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.61	0.0	0.04	14.43	0.00	2.163	7.04	0.25	4.8	95.2	0.0	1.37	0.70	0.73	0.91	3.38	10793	1369	4	0	0	0	0	logfile
✘	5GW5	9541	2023-02-24	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7MVU	24056	2023-02-25	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7Q2X	13783	2023-02-22	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	6UES	20755	2023-02-17	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6RKV	4912	2023-02-21	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	4.5	0.004	0.79	0.0	0.05	15.32	0.01	2.138	16.10	0.00	6.7	93.3	0.0	-1.32	0.90	0.88	0.80	—	15460	1784	8	64	0	0	0	logfile
✔	7EoQ	31227	2023-02-25	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	10.21	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.59	0.0	0.04	11.26	0.00	2.196	13.19	0.00	6.8	93.2	0.0	-0.65	1.22	0.89	0.79	—	24742	3144	8	0	10	0	0	logfile
✔	6WTS	21898	2023-02-19	2020-05-03	3.3	3.77	—	3.8	0.002	0.48	0.0	0.04	11.63	0.00	2.272	5.08	0.41	3.9	96.0	0.1	-1.65	0.59	0.72	2.93	3.7	0.005	0.69	0.0	0.05	15.23	0.00	2.164	11.42	1.02	4.2	95.7	0.1	-0.73	0.60	0.48	0.78	2.74	9863	1287	8	0	10	0	0	logfile
✔	7S3i	24825	2023-02-18	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	7YES	33776	2023-02-21	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.004	0.57	0.0	0.04	15.80	0.00	2.183	5.41	0.25	7.0	92.3	0.6	0.93	0.89	0.82	0.87	2.53	14679	1863	6	0	1	0	0	logfile
✔	7DR6	30824	2023-02-23	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.90	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	7R8C	24315	2023-02-18	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	7R8D	24316	2023-02-18	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.46	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.4	0.004	0.62	0.0	0.04	15.91	0.00	2.226	7.01	0.32	5.2	94.8	0.0	0.41	0.92	0.63	0.87	2.20	8762	1090	4	0	8	0	0	logfile
✔	7ND9	12280	2023-02-26	2021-01-30	2.8	3.07	—	3.0	0.002	0.53	0.0	0.04	11.50	0.00	2.198	4.33	0.62	4.9	94.9	0.2	-0.76	0.75	0.83	2.70	3.0	0.003	0.59	0.0	0.04	14.45	0.00	2.201	7.29	1.61	2.9	97.0	0.1	0.33	1.03	0.74	0.87	2.54	27336	3482	19	0	50	0	0	logfile
✔	7VLY	32031	2023-02-20	2021-10-05	2.45	2.52	—	2.5	0.002	0.60	0.0	0.04	16.11	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.60	0.0	0.04	16.62	0.01	2.204	6.62	1.90	5.2	94.8	0.0	1.91	0.91	0.73	0.88	2.86	13347	1773	18	0	3	30	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile

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