Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JPT	22422	2021-12-02	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.51	0.10	8.4	91.6	0.0	-2.25	0.56	0.73	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	6W1N	21513	2021-12-01	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.43	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.77	0.0	0.04	14.18	0.00	2.104	11.97	0.22	3.1	96.9	0.0	0.83	0.77	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7C76	30293	2021-12-01	2020-05-23	3.4	3.82	—	3.7	0.002	0.56	0.0	0.04	16.02	0.00	2.219	9.46	1.91	5.8	94.1	0.1	-2.76	0.62	0.76	1.72	3.7	0.006	0.83	0.0	0.05	17.24	0.01	2.084	18.00	0.57	6.3	93.6	0.1	-0.89	1.38	0.60	0.80	2.25	9762	1174	11	0	25	0	0	logfile
✔	7LZE	23605	2021-12-01	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.6	0.004	0.56	0.0	0.04	14.83	0.00	2.158	3.40	0.00	7.3	92.7	0.0	-0.75	1.12	0.78	0.85	2.79	7842	1011	9	0	9	0	0	logfile
✔	7R8D	24316	2021-12-01	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.46	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.003	0.56	0.0	0.04	15.90	0.00	2.230	6.45	0.54	5.0	95.0	0.0	0.75	0.91	0.64	0.87	1.94	8762	1090	4	0	8	0	0	logfile
✔	7R89	24312	2021-12-02	2021-06-26	2.6	2.92	—	2.9	0.002	0.56	0.0	0.04	14.72	0.00	2.221	7.78	3.39	3.8	96.2	0.0	-1.46	0.71	0.86	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10531	1332	5	0	1	0	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	6VX4	21429	2021-12-01	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.008	0.93	0.0	0.05	16.40	0.01	2.123	25.72	0.47	7.7	92.3	0.0	-1.75	1.49	0.84	0.83	2.48	9813	1265	9	0	0	0	0	logfile
✔	7Fii	31598	2021-12-01	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.52	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7KAL	22774	2021-12-02	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10789	1429	7	0	0	0	0	logfile
✔	6WFQ	21652	2021-12-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.46	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✔	6XMF	22257	2021-12-01	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.63	0.20	9.8	90.2	0.0	-0.48	0.47	0.72	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7V84	31789	2021-12-01	2021-08-22	3.0	3.81	—	3.5	0.002	0.49	0.0	0.04	15.06	0.00	2.199	5.87	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.59	0.0	0.05	16.32	0.00	2.178	7.41	0.57	4.7	95.3	0.0	-0.04	0.36	0.78	0.84	2.95	6636	797	9	0	13	0	0	logfile
✔	7C8K	30306	2021-12-01	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.1	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.11	0.20	3.9	96.1	0.0	1.51	0.53	0.84	0.81	3.09	4853	596	3	0	6	0	0	logfile
✔	7DDo	30655	2021-12-01	2020-10-29	3.4	3.24	—	3.2	0.002	0.53	0.0	0.04	14.10	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.003	0.60	0.0	0.04	15.87	0.00	2.026	10.39	0.43	2.7	97.3	0.0	1.01	0.35	0.74	0.81	2.23	6468	791	4	0	5	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7JGG	22326	2021-12-01	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.13	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.22	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7PE7	13347	2021-12-02	2021-08-09	3.41	3.76	—	3.7	0.002	0.46	0.0	0.13	9.06	0.00	2.205	4.31	0.98	3.3	96.6	0.1	-0.02	0.78	0.80	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58582	7664	16	0	6	0	0	logfile
✔	6i52	4410	2021-12-01	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.82	0.0	0.05	18.33	0.01	2.108	21.29	0.00	10.1	89.2	0.7	-2.91	3.57	0.76	0.61	—	3856	432	4	20	0	0	0	logfile

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