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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JPT | 22422 | 2022-05-13 | 2020-08-09 | 3.2 | 3.54 | 3.50 | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.86 | 0.00 | 2.267 | 8.87 | 3.48 | 6.8 | 93.2 | 0.1 | -4.02 | 0.66 | 0.71 | 2.64 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.48 | 0.00 | 2.182 | 12.82 | 0.10 | 8.4 | 91.6 | 0.0 | -2.25 | 0.56 | 0.72 | 0.77 | 2.68 | 10220 | 1327 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2022-05-17 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 14.91 | 0.00 | 1.951 | 7.15 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 16.17 | 0.00 | 1.889 | 15.68 | 0.51 | 6.1 | 93.9 | 0.0 | -1.23 | 1.21 | 0.84 | 0.86 | 1.05 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 6ZQi | 11364 | 2022-05-12 | 2020-07-09 | 3.8 | 4.13 | 3.63 | 4.1 | 0.002 | 0.56 | 0.0 | 0.04 | 12.40 | 0.00 | 2.336 | 6.43 | 1.12 | 3.1 | 96.9 | 0.0 | -2.14 | 0.67 | 0.78 | 0.85 | 4.1 | 0.003 | 0.79 | 0.0 | 0.05 | 15.51 | 0.00 | 2.217 | 11.86 | 0.93 | 4.5 | 95.5 | 0.0 | -0.39 | 0.73 | 0.67 | 0.79 | 1.33 | 5032 | 655 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6YV1 | 10940 | 2022-05-12 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZoJ | 11320 | 2022-05-15 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.31 | 0.00 | 1.694 | 4.49 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | 2.9 | 0.007 | 0.69 | 0.0 | 0.04 | 16.02 | 0.01 | 1.068 | 5.53 | 2.64 | 3.5 | 96.5 | 0.0 | 0.48 | 2.45 | 0.81 | 0.87 | 3.31 | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✔ | 7C7A | 30297 | 2022-05-15 | 2020-05-24 | 2.8 | 3.32 | — | 3.1 | 0.002 | 0.58 | 0.0 | 0.04 | 14.30 | 0.00 | 2.157 | 8.79 | 0.04 | 5.9 | 94.0 | 0.1 | -2.84 | 0.79 | 0.71 | 0.74 | 3.1 | 0.008 | 0.90 | 1.0 | 0.04 | 16.43 | 0.01 | 1.702 | 13.67 | 2.74 | 6.7 | 93.3 | 0.0 | -0.44 | 0.88 | 0.84 | 0.82 | 1.32 | 27500 | 2519 | 16 | 339 | 4 | 0 | 0 | logfile |
✔ | 7C8K | 30306 | 2022-05-13 | 2020-06-02 | 3.2 | 3.18 | — | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 13.54 | 0.00 | 2.001 | 4.98 | 0.00 | 3.2 | 96.8 | 0.0 | -1.52 | 0.82 | 0.78 | 2.09 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 15.51 | 0.00 | 2.220 | 7.32 | 0.20 | 3.9 | 96.1 | 0.0 | 1.51 | 0.53 | 0.85 | 0.83 | 3.09 | 4853 | 596 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 6GC8 | 4383 | 2022-05-16 | 2018-04-17 | 3.8 | 4.18 | — | 3.9 | 0.002 | 0.57 | 0.0 | 0.03 | 12.93 | 0.00 | 2.129 | 3.91 | 0.16 | 6.3 | 93.5 | 0.2 | -4.04 | 0.71 | 0.60 | 0.92 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.79 | 0.01 | 1.574 | 21.78 | 0.32 | 9.0 | 90.9 | 0.1 | -2.06 | 1.97 | 0.82 | 0.78 | 0.65 | 88884 | 3090 | 42 | 3016 | 6 | 42 | 0 | logfile |
✔ | 6V4U | 21048 | 2022-05-12 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.40 | 0.01 | 2.190 | 11.62 | 0.20 | 11.9 | 88.1 | 0.0 | -1.59 | 0.78 | 0.76 | 0.67 | 1.58 | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C79 | 30296 | 2022-05-15 | 2020-05-24 | 2.5 | 3.14 | — | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.01 | 0.00 | 1.974 | 8.80 | 0.09 | 5.7 | 94.2 | 0.1 | -2.99 | 0.74 | 0.68 | 0.77 | 2.9 | 0.010 | 1.02 | 1.0 | 0.04 | 16.54 | 0.01 | 1.652 | 15.13 | 2.35 | 7.5 | 92.4 | 0.0 | -0.59 | 0.90 | 0.80 | 0.79 | 1.59 | 27324 | 2519 | 14 | 331 | 2 | 0 | 0 | logfile |
✔ | 6NUD | 0516 | 2022-05-14 | 2019-01-31 | 3.5 | 3.80 | — | 3.7 | 0.002 | 0.43 | 0.0 | 0.03 | 11.76 | 0.00 | 2.290 | 4.86 | 0.29 | 15.0 | 83.5 | 1.5 | -5.22 | 0.53 | 0.46 | 0.65 | 3.7 | 0.010 | 1.13 | 1.0 | 0.04 | 16.83 | 0.01 | 1.504 | 18.57 | 0.29 | 9.3 | 90.7 | 0.0 | -3.09 | 1.67 | 0.73 | 0.76 | 2.01 | 20831 | 2420 | 13 | 68 | 1 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2022-05-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.85 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 15.70 | 0.01 | 1.977 | 17.94 | 0.96 | 9.8 | 90.1 | 0.1 | -1.94 | 0.85 | 0.78 | 0.77 | 0.96 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2022-05-16 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 12.29 | 0.00 | 2.283 | 3.48 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 4.0 | 0.006 | 0.75 | 0.0 | 0.04 | 15.56 | 0.01 | 1.958 | 23.06 | 1.00 | 11.1 | 88.8 | 0.1 | -2.13 | 2.61 | 0.78 | 0.76 | 1.15 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 6NUE | 0519 | 2022-05-14 | 2019-01-31 | 3.3 | 3.58 | — | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 11.15 | 0.00 | 2.214 | 5.51 | 0.34 | 15.3 | 82.3 | 2.4 | -5.57 | 0.58 | 0.57 | 0.80 | 3.6 | 0.009 | 1.03 | 2.0 | 0.04 | 15.97 | 0.00 | 1.810 | 13.31 | 0.29 | 7.7 | 92.2 | 0.2 | -3.01 | 1.14 | 0.70 | 0.78 | 1.65 | 20175 | 2412 | 12 | 40 | 1 | 0 | 0 | logfile |
✔ | 6HD7 | 0202 | 2022-05-18 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 14.93 | 0.00 | 0.345 | 25.04 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 17.84 | 0.01 | 1.953 | 18.84 | 0.71 | 7.3 | 92.3 | 0.4 | -1.37 | 1.56 | 0.76 | 0.87 | 1.70 | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✔ | 6Y5H | 10697 | 2022-05-13 | 2020-02-25 | 3.0 | 3.10 | 3.04 | 3.1 | 0.002 | 0.56 | 0.0 | 0.07 | 14.94 | 0.01 | 2.238 | 3.19 | 0.70 | 4.1 | 95.9 | 0.0 | -2.50 | 0.53 | 0.56 | 0.43 | 3.1 | 0.005 | 0.64 | 0.0 | 0.05 | 17.36 | 0.00 | 2.146 | 4.46 | 3.83 | 3.2 | 96.8 | 0.0 | -0.48 | 1.11 | 0.77 | 0.87 | 3.53 | 11994 | 1470 | 18 | 0 | 33 | 0 | 0 | logfile |
✔ | 6ZQJ | 11366 | 2022-05-13 | 2020-07-09 | 4.2 | 3.97 | 4.23 | 4.3 | 0.002 | 0.55 | 0.0 | 0.04 | 12.29 | 0.00 | 2.286 | 6.57 | 1.55 | 2.9 | 97.0 | 0.1 | -2.13 | 0.67 | 0.75 | — | 4.2 | 0.004 | 0.87 | 0.0 | 0.05 | 13.96 | 0.00 | 2.139 | 12.94 | 0.00 | 5.6 | 94.4 | 0.0 | -1.11 | 2.03 | 0.70 | 0.79 | — | 15096 | 1965 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NDC | 12283 | 2022-05-16 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.002 | 0.52 | 0.0 | 0.04 | 11.62 | 0.00 | 2.118 | 3.67 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.14 | 0.00 | 2.100 | 9.52 | 0.03 | 3.6 | 96.4 | 0.0 | 0.30 | 1.80 | 0.85 | 0.79 | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |
✔ | 6LXE | 30006 | 2022-05-13 | 2020-02-10 | 4.2 | 4.23 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 15.29 | 0.00 | 2.030 | 17.23 | 0.14 | 8.7 | 91.3 | 0.0 | -3.22 | 0.85 | 0.70 | — | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 14.68 | 0.01 | 2.206 | 22.77 | 0.00 | 9.7 | 90.3 | 0.0 | -1.93 | 1.69 | 0.85 | 0.71 | — | 6519 | 813 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LXD | 30005 | 2022-05-13 | 2020-02-10 | 3.9 | 3.67 | — | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.46 | 0.00 | 2.239 | 15.47 | 0.70 | 9.3 | 90.7 | 0.0 | -3.27 | 0.87 | 0.79 | 0.87 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 15.09 | 0.00 | 2.121 | 19.79 | 0.58 | 9.2 | 90.8 | 0.0 | -1.41 | 0.67 | 0.88 | 0.79 | 1.02 | 9435 | 963 | 5 | 72 | 2 | 0 | 0 | logfile |