Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F0J	31399	2023-04-22	2021-06-04	2.9	2.91	2.89	2.9	0.002	0.54	0.0	0.04	13.59	0.01	2.281	9.77	0.00	6.3	93.7	0.0	0.67	0.59	0.73	1.26	3.0	0.003	0.60	0.0	0.04	17.04	0.01	2.223	9.41	1.73	6.5	93.5	0.0	1.03	0.61	0.61	0.78	1.48	12424	1544	8	0	4	0	0	logfile
✔	6U6D	20663	2023-04-24	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.59	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.003	0.52	0.0	0.04	15.56	0.00	2.136	6.68	0.16	3.6	96.4	0.0	-0.37	0.48	0.81	0.84	2.10	16770	2156	10	0	2	0	0	logfile
✔	8HR7	34962	2023-04-24	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	6LXD	30005	2023-04-23	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.36	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.79	0.0	0.04	15.12	0.00	2.107	19.85	0.12	9.6	90.4	0.0	-1.50	0.67	0.88	0.80	0.85	9435	963	5	72	2	0	0	logfile
✔	7V19	26954	2023-04-21	2022-05-11	3.3	3.11	3.32	3.2	0.002	0.51	0.0	0.04	11.13	0.01	2.186	4.92	1.16	1.6	98.4	0.0	1.59	0.52	0.80	3.44	3.2	0.002	0.51	0.0	0.04	14.35	0.00	2.188	6.77	0.21	1.5	98.5	0.0	2.18	0.63	0.54	0.83	2.64	8936	1114	8	0	8	0	0	logfile
✔	7Xo9	33341	2023-04-20	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.17	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.003	0.64	0.0	0.04	17.46	0.00	2.129	9.86	1.87	2.8	97.2	0.0	0.54	0.65	0.76	0.79	2.77	6483	793	2	0	5	0	0	logfile
✔	6V4U	21048	2023-04-20	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.005	0.88	0.0	0.05	13.39	0.01	2.103	18.42	0.81	16.6	83.4	0.0	-2.30	0.90	0.77	0.69	1.61	7074	1106	3	0	0	0	0	logfile
✔	7CKL	30387	2023-04-22	2020-07-17	3.88	4.01	—	3.9	0.002	0.56	0.0	0.04	13.09	0.00	2.244	10.45	0.00	6.8	93.1	0.1	-2.17	0.73	0.75	1.49	3.9	0.003	0.78	0.0	0.04	15.87	0.00	2.026	13.03	0.16	7.0	93.0	0.0	0.21	0.70	0.73	0.76	1.33	11521	1464	4	0	3	0	0	logfile
✔	7R7C	24297	2023-04-23	2021-06-24	3.71	3.61	3.17	3.3	0.002	0.53	0.0	0.04	15.84	0.00	2.134	11.12	0.00	4.8	95.2	0.0	-0.30	0.74	0.77	2.08	3.3	0.005	0.67	0.0	0.04	17.37	0.00	2.088	15.46	0.45	6.1	93.9	0.0	-0.63	0.43	0.75	0.79	1.91	14950	1273	11	226	0	0	0	logfile
✔	7T4N	25681	2023-04-20	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7MFE	23814	2023-04-20	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.003	0.69	0.0	0.04	15.41	0.00	2.119	16.38	0.00	5.6	94.4	0.0	-1.25	0.57	0.62	0.63	—	6844	859	4	0	2	0	0	logfile
✔	7QPG	14120	2023-04-20	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.003	0.67	0.0	0.04	13.10	0.00	2.137	11.18	0.11	3.0	97.0	0.0	1.12	0.84	0.88	0.76	0.33	57164	7156	6	0	0	0	0	logfile
✔	7R9o	24330	2023-04-20	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6LXE	30006	2023-04-22	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.79	0.0	0.04	14.69	0.00	2.204	23.00	0.00	9.3	90.7	0.0	-2.10	1.69	0.85	0.71	—	6519	813	4	0	2	0	0	logfile
✔	7R9E	24324	2023-04-20	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7oDR	12845	2023-04-19	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile
✔	8AP8	15561	2023-04-22	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.003	0.51	0.0	0.04	13.75	0.00	2.107	5.71	0.78	3.4	96.6	0.0	2.09	1.18	0.73	0.84	1.53	12083	767	5	0	0	0	6098	logfile
✔	6ZQi	11364	2023-04-20	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.41	0.00	2.336	6.03	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.81	0.0	0.05	15.75	0.00	2.169	10.96	0.37	5.7	94.3	0.0	-0.46	0.72	0.67	0.80	1.24	5032	655	4	0	1	0	0	logfile
✔	7N9Q	24259	2023-04-20	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	8FM9	29289	2023-04-28	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.003	0.60	0.0	0.04	13.56	0.00	1.971	7.01	0.29	4.3	95.6	0.2	1.29	1.47	0.48	0.78	2.50	76764	7692	24	0	0	0	29916	logfile

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