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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8C97 | 16504 | 2024-03-23 | 2023-01-21 | 4.07 | 4.81 | 4.16 | 4.0 | 0.002 | 0.39 | 0.0 | 0.03 | 23.09 | 0.00 | 1.904 | 5.95 | 0.00 | 4.6 | 95.2 | 0.2 | 0.72 | 0.80 | 0.75 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.03 | 23.84 | 0.00 | 1.806 | 22.26 | 0.00 | 8.3 | 91.4 | 0.3 | -1.49 | 0.75 | 0.80 | 0.83 | — | 36163 | 1077 | 12 | 1292 | 0 | 0 | 0 | logfile |
✔ | 7Xo9 | 33341 | 2024-03-11 | 2022-05-01 | 3.0 | 2.26 | 3.23 | 3.1 | 0.002 | 0.47 | 0.0 | 0.06 | 13.06 | 0.01 | 2.059 | 3.31 | 0.00 | 2.0 | 98.0 | 0.0 | -1.79 | 0.74 | 0.73 | 2.69 | 2.0 | 0.004 | 0.66 | 0.0 | 0.04 | 17.14 | 0.00 | 2.046 | 10.73 | 2.01 | 3.5 | 96.5 | 0.0 | 0.33 | 0.65 | 0.77 | 0.80 | 3.03 | 6483 | 793 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 8HoY | 34927 | 2024-03-16 | 2022-12-11 | 2.76 | 2.99 | 2.88 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 13.25 | 0.00 | 2.189 | 9.49 | 0.00 | 7.4 | 92.6 | 0.1 | -0.64 | 0.51 | 0.54 | 0.86 | 3.0 | 0.003 | 0.72 | 0.0 | 0.05 | 16.49 | 0.01 | 2.065 | 15.38 | 2.95 | 8.9 | 90.9 | 0.1 | -1.73 | 0.80 | 0.54 | 0.60 | 0.92 | 13454 | 1650 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oBR | 12801 | 2024-03-23 | 2021-04-23 | 2.8 | 2.88 | — | 2.9 | 0.002 | 0.49 | 1.0 | 0.03 | 23.16 | 0.00 | 1.835 | 8.03 | 2.55 | 4.6 | 95.3 | 0.0 | 0.58 | 0.61 | 0.80 | 2.85 | 2.8 | 0.006 | 0.66 | 2.0 | 0.04 | 23.79 | 0.01 | 1.862 | 9.15 | 4.00 | 5.6 | 94.3 | 0.1 | 0.16 | 1.20 | 0.64 | 0.86 | 3.00 | 146701 | 7484 | 60 | 4019 | 102 | 0 | 0 | logfile |
✔ | 8iP4 | 35631 | 2024-03-15 | 2023-03-14 | 2.7 | 3.34 | 2.82 | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 12.81 | 0.00 | 2.319 | 4.04 | 0.00 | 1.6 | 98.4 | 0.0 | 3.99 | 0.73 | 0.82 | 2.85 | 3.1 | 0.002 | 0.50 | 0.0 | 0.04 | 15.34 | 0.00 | 2.249 | 7.89 | 0.70 | 1.6 | 98.4 | 0.0 | 3.77 | 1.06 | 0.72 | 0.82 | 3.07 | 12933 | 1600 | 12 | 0 | 3 | 5 | 0 | logfile |
✔ | 7UG0 | 26482 | 2024-03-10 | 2022-03-23 | 2.55 | 3.24 | 2.49 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 11.57 | 0.00 | 2.287 | 2.34 | 0.00 | 1.0 | 99.0 | 0.0 | 2.00 | 0.56 | 0.90 | 3.59 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 12.64 | 0.00 | 2.212 | 4.68 | 0.62 | 0.7 | 99.3 | 0.0 | 3.98 | 1.26 | 0.53 | 0.87 | 2.05 | 3126 | 418 | 1 | 0 | 3 | 4 | 0 | logfile |
✔ | 7oDR | 12845 | 2024-03-10 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 16.55 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.71 | 1.0 | 0.04 | 19.07 | 0.01 | 1.903 | 10.44 | 2.27 | 2.2 | 97.8 | 0.0 | 0.74 | 1.25 | 0.76 | 0.84 | 2.81 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 7oZo | 13130 | 2024-03-11 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.62 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.003 | 0.71 | 0.0 | 0.05 | 16.89 | 0.00 | 2.129 | 15.52 | 2.81 | 3.6 | 96.4 | 0.0 | -0.14 | 1.27 | 0.82 | 0.78 | 0.99 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7UGJ | 26489 | 2024-03-10 | 2022-03-24 | 2.81 | 3.45 | 2.86 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 10.72 | 0.00 | 2.285 | 3.79 | 0.00 | 0.7 | 99.3 | 0.0 | 2.01 | 0.54 | 0.89 | 3.90 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 13.41 | 0.00 | 2.202 | 5.21 | 2.86 | 0.7 | 99.3 | 0.0 | 2.78 | 0.53 | 0.51 | 0.86 | 2.03 | 3095 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 8TQo | 41510 | 2024-03-15 | 2023-08-08 | 3.1 | 3.83 | 3.25 | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.86 | 0.00 | 2.202 | 8.77 | 0.16 | 4.5 | 95.5 | 0.0 | 0.14 | 0.76 | 0.83 | 1.75 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 17.14 | 0.00 | 2.210 | 8.36 | 3.33 | 4.7 | 95.3 | 0.0 | 0.61 | 1.01 | 0.71 | 0.80 | 2.49 | 11122 | 1437 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZN | 13129 | 2024-03-11 | 2021-06-28 | 3.5 | 3.79 | 3.49 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 14.10 | 0.00 | 2.073 | 4.61 | 0.00 | 2.0 | 98.0 | 0.0 | 1.13 | 0.77 | 0.72 | 1.17 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 16.88 | 0.00 | 2.138 | 14.22 | 2.99 | 3.3 | 96.7 | 0.0 | 0.03 | 0.83 | 0.79 | 0.78 | 1.46 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7QWR | 14192 | 2024-03-17 | 2022-01-25 | 2.9 | 2.44 | — | 2.9 | 0.002 | 0.47 | 0.0 | 0.03 | 22.87 | 0.00 | 2.054 | 7.58 | 0.72 | 5.1 | 94.8 | 0.1 | -0.61 | 0.48 | 0.71 | 2.26 | 2.7 | 0.008 | 0.94 | 0.0 | 0.05 | 24.15 | 0.01 | 1.795 | 9.20 | 6.93 | 7.3 | 92.6 | 0.1 | -1.29 | 1.42 | 0.53 | 0.82 | 2.98 | 134576 | 6621 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7WK7 | 32561 | 2024-03-15 | 2022-01-08 | 3.49 | 2.78 | — | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.206 | 5.49 | 3.12 | 4.5 | 95.4 | 0.1 | -3.90 | 0.77 | 0.76 | 2.02 | 3.0 | 0.004 | 0.74 | 0.0 | 0.04 | 14.90 | 0.00 | 2.193 | 15.64 | 4.63 | 7.0 | 92.9 | 0.2 | -0.97 | 0.73 | 0.80 | 0.80 | 2.20 | 10206 | 1330 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Wo9 | 32643 | 2024-03-15 | 2022-01-20 | 2.81 | 3.01 | — | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 13.97 | 0.00 | 2.227 | 5.86 | 0.00 | 4.2 | 95.8 | 0.0 | 1.49 | 0.70 | 0.78 | 2.04 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 16.17 | 0.00 | 2.216 | 5.82 | 1.01 | 4.7 | 95.3 | 0.0 | 1.94 | 0.74 | 0.71 | 0.80 | 1.84 | 12743 | 1581 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C95 | 16502 | 2024-03-24 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 24.56 | 0.01 | 1.894 | 49.43 | 0.00 | 10.6 | 89.4 | 0.0 | -1.86 | 1.96 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 8C98 | 16505 | 2024-03-21 | 2023-01-21 | 3.66 | 4.27 | 3.73 | 3.6 | 0.002 | 0.38 | 0.0 | 0.03 | 22.60 | 0.00 | 1.923 | 5.79 | 0.00 | 4.7 | 95.3 | 0.0 | 1.35 | 0.79 | 0.72 | 1.74 | 3.6 | 0.004 | 0.57 | 0.0 | 0.03 | 23.01 | 0.00 | 2.084 | 14.57 | 2.73 | 8.2 | 91.8 | 0.0 | -0.81 | 0.59 | 0.79 | 0.83 | 1.31 | 30284 | 1080 | 12 | 1018 | 0 | 0 | 0 | logfile |
✔ | 7Z8T | 14563 | 2024-03-17 | 2022-03-18 | 3.0 | 2.27 | 2.91 | 2.0 | 0.002 | 0.50 | 0.0 | 0.04 | 13.08 | 0.00 | 1.988 | 5.05 | 0.05 | 2.0 | 98.0 | 0.0 | 1.77 | 0.80 | 0.79 | 2.41 | 1.9 | 0.005 | 0.62 | 0.0 | 0.04 | 16.43 | 0.00 | 2.000 | 6.37 | 2.46 | 2.7 | 97.3 | 0.0 | 1.66 | 0.91 | 0.81 | 0.83 | 2.33 | 18077 | 2395 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PP4 | 13579 | 2024-03-19 | 2021-09-13 | 3.84 | 4.20 | 3.93 | 4.0 | 0.002 | 0.48 | 0.0 | 0.04 | 9.43 | 0.00 | 1.926 | 5.55 | 0.39 | 3.3 | 96.7 | 0.0 | -0.03 | 0.83 | 0.80 | 1.49 | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 13.80 | 0.00 | 2.140 | 10.49 | 2.41 | 4.3 | 95.7 | 0.0 | -0.13 | 1.35 | 0.84 | 0.84 | 1.21 | 23816 | 3059 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NFX | 12303 | 2024-03-24 | 2021-02-08 | 3.2 | 3.29 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 23.45 | 0.00 | 2.097 | 8.82 | 3.98 | 4.9 | 95.0 | 0.1 | 0.36 | 0.55 | 0.78 | 2.57 | 3.2 | 0.006 | 0.72 | 0.0 | 0.04 | 23.78 | 0.01 | 1.956 | 10.79 | 4.36 | 6.7 | 93.2 | 0.1 | -0.32 | 0.59 | 0.58 | 0.85 | 2.41 | 148232 | 7672 | 62 | 4018 | 30 | 0 | 0 | logfile |
✘ | 7PE7 | 13347 | 2024-03-11 | 2021-08-09 | 3.41 | 3.76 | — | 3.7 | 0.002 | 0.46 | 0.0 | 0.04 | 9.06 | 0.00 | 2.205 | 4.36 | 0.98 | 3.3 | 96.6 | 0.1 | -0.02 | 0.78 | 0.80 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58582 | 7664 | 16 | 0 | 6 | 0 | 0 | logfile |