Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L54	0837	2022-04-06	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.69	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.011	0.97	0.0	0.04	14.18	0.01	1.792	71.51	0.25	12.8	87.2	0.0	-2.18	0.75	0.81	0.78	2.03	20387	2608	3	0	2	0	857	logfile
✔	7C79	30296	2022-04-07	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.76	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	2.9	0.010	1.02	1.0	0.04	16.54	0.01	1.652	15.09	2.35	7.5	92.4	0.0	-0.59	0.90	0.80	0.79	1.59	27324	2519	14	331	2	0	0	logfile
✔	6UVA	20906	2022-04-04	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	7A97	11687	2022-04-08	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.84	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.003	0.68	0.0	0.04	9.13	0.00	2.109	12.42	0.03	4.0	96.0	0.0	-1.10	2.57	0.90	0.83	—	34626	4373	5	0	0	0	0	logfile
✔	6WB0	21583	2022-04-04	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.83	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.003	0.60	0.0	0.04	12.45	0.00	2.138	10.03	0.00	4.7	95.3	0.0	-1.45	1.28	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	7NDB	12282	2022-04-07	2021-01-30	4.6	5.10	—	4.9	0.002	0.52	0.0	0.04	11.41	0.00	2.174	5.04	0.72	4.5	95.3	0.1	-0.78	0.82	0.72	—	4.9	0.003	0.68	0.0	0.05	12.09	0.00	2.116	16.00	0.03	4.2	95.7	0.0	-0.42	0.95	0.84	0.77	—	27184	3460	19	0	50	0	0	logfile
✔	6J2X	9772	2022-04-04	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.62	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.005	0.82	1.0	0.05	15.39	0.01	2.081	20.71	0.70	5.3	94.6	0.1	-0.82	1.89	0.84	0.78	0.91	106176	13501	47	0	0	0	0	logfile
✔	6U6D	20663	2022-04-06	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.003	0.54	0.0	0.05	15.59	0.00	2.142	6.80	0.22	3.3	96.7	0.0	-0.81	0.47	0.80	0.84	2.03	16770	2156	10	0	2	0	0	logfile
✔	6TFK	10493	2022-04-09	2019-11-14	2.9	3.06	2.94	3.1	0.002	0.47	0.0	0.04	9.64	0.00	1.917	7.26	0.24	9.1	90.9	0.0	-2.49	0.72	0.77	2.62	3.0	0.004	0.60	0.0	0.04	13.82	0.00	1.936	8.49	1.67	7.6	92.2	0.1	-0.88	0.72	0.72	0.78	2.62	43237	2724	5	0	1	0	21544	logfile
✔	5MBV	3460	2022-04-07	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	6.92	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.008	0.95	1.0	0.04	13.34	0.00	2.107	13.54	0.16	4.0	96.0	0.0	1.06	0.86	0.88	0.83	1.51	24118	3014	5	0	0	0	0	logfile
✔	6Wi9	21683	2022-04-04	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.37	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.09	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6W18	21503	2022-04-05	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.79	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.1	0.007	0.90	0.0	0.05	13.19	0.01	2.028	17.50	0.09	12.6	87.4	0.0	-2.30	1.61	0.78	0.73	—	13151	1837	9	0	3	0	0	logfile
✔	6T2U	10369	2022-04-07	2019-10-09	3.6	4.08	—	3.6	0.002	0.48	1.0	0.04	13.04	0.01	2.211	4.72	2.98	2.0	98.0	0.0	-3.59	0.85	0.71	0.66	3.6	0.004	0.69	0.0	0.04	15.81	0.00	2.156	13.19	0.25	4.9	95.1	0.0	0.47	3.52	0.87	0.77	0.69	23826	2847	4	54	0	0	0	logfile
✔	6T2V	10370	2022-04-07	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.76	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.81	0.00	2.092	16.82	0.08	4.5	95.5	0.0	0.41	2.39	0.90	0.80	0.58	23826	2847	4	54	0	0	0	logfile
✔	6LXD	30005	2022-04-05	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.36	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.77	0.0	0.04	15.09	0.00	2.121	19.41	0.58	9.2	90.8	0.0	-1.41	0.67	0.88	0.79	1.02	9435	963	5	72	2	0	0	logfile
✔	6F40	4180	2022-04-09	2017-11-29	3.7	3.79	—	3.7	0.002	0.64	0.0	0.04	14.80	0.01	2.166	7.39	0.84	10.9	89.0	0.1	-5.20	0.78	0.74	2.25	3.7	0.004	0.83	0.0	0.05	17.15	0.00	2.017	11.79	0.26	9.1	90.9	0.0	-2.60	0.68	0.81	0.79	1.83	47396	5667	28	113	7	0	0	logfile
✔	6V4U	21048	2022-04-04	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.003	0.72	0.0	0.04	13.40	0.01	2.190	11.46	0.20	11.9	88.1	0.0	-1.59	0.78	0.76	0.67	1.58	7074	1106	3	0	0	0	0	logfile
✔	6LXE	30006	2022-04-05	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.80	0.0	0.04	14.68	0.01	2.206	22.38	0.00	9.7	90.3	0.0	-1.93	1.69	0.85	0.71	—	6519	813	4	0	2	0	0	logfile
✔	6Y5H	10697	2022-04-05	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	2.93	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.005	0.64	0.0	0.05	17.36	0.00	2.146	4.25	3.83	3.2	96.8	0.0	-0.48	1.11	0.77	0.87	3.53	11994	1470	18	0	33	0	0	logfile
✔	6TFJ	10492	2022-04-09	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.76	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.56	0.0	0.04	14.94	0.00	1.962	9.16	1.53	7.1	92.9	0.1	-0.73	1.31	0.70	0.75	2.11	48340	3058	4	0	0	0	24098	logfile

• ← previous
• Page 4 of 366
• next →