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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6L54 | 0837 | 2022-04-06 | 2019-10-22 | 3.43 | 3.58 | — | 3.5 | 0.002 | 0.49 | 0.0 | 0.03 | 7.60 | 0.00 | 1.978 | 61.69 | 0.79 | 8.8 | 91.2 | 0.0 | -3.87 | 0.77 | 0.72 | 1.74 | 3.5 | 0.011 | 0.97 | 0.0 | 0.04 | 14.18 | 0.01 | 1.792 | 71.51 | 0.25 | 12.8 | 87.2 | 0.0 | -2.18 | 0.75 | 0.81 | 0.78 | 2.03 | 20387 | 2608 | 3 | 0 | 2 | 0 | 857 | logfile |
✔ | 7C79 | 30296 | 2022-04-07 | 2020-05-24 | 2.5 | 3.14 | — | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.01 | 0.00 | 1.974 | 8.76 | 0.09 | 5.7 | 94.2 | 0.1 | -2.99 | 0.74 | 0.68 | 0.77 | 2.9 | 0.010 | 1.02 | 1.0 | 0.04 | 16.54 | 0.01 | 1.652 | 15.09 | 2.35 | 7.5 | 92.4 | 0.0 | -0.59 | 0.90 | 0.80 | 0.79 | 1.59 | 27324 | 2519 | 14 | 331 | 2 | 0 | 0 | logfile |
✔ | 6UVA | 20906 | 2022-04-04 | 2019-11-01 | 2.3 | 2.12 | 2.31 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 18.07 | 0.00 | 2.207 | 6.60 | 3.36 | 3.2 | 96.8 | 0.0 | -2.29 | 0.63 | 0.72 | 2.83 | 2.3 | 0.003 | 0.61 | 0.0 | 0.04 | 18.40 | 0.00 | 2.158 | 8.08 | 3.55 | 4.4 | 95.6 | 0.0 | 0.30 | 1.31 | 0.66 | 0.78 | 2.82 | 9561 | 1199 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A97 | 11687 | 2022-04-08 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.84 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 9.13 | 0.00 | 2.109 | 12.42 | 0.03 | 4.0 | 96.0 | 0.0 | -1.10 | 2.57 | 0.90 | 0.83 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WB0 | 21583 | 2022-04-04 | 2020-03-26 | 4.2 | 4.26 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.69 | 0.00 | 2.131 | 11.83 | 0.81 | 4.1 | 95.9 | 0.0 | -4.46 | 0.79 | 0.74 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 12.45 | 0.00 | 2.138 | 10.03 | 0.00 | 4.7 | 95.3 | 0.0 | -1.45 | 1.28 | 0.81 | 0.78 | — | 8518 | 948 | 4 | 77 | 0 | 0 | 0 | logfile |
✔ | 7NDB | 12282 | 2022-04-07 | 2021-01-30 | 4.6 | 5.10 | — | 4.9 | 0.002 | 0.52 | 0.0 | 0.04 | 11.41 | 0.00 | 2.174 | 5.04 | 0.72 | 4.5 | 95.3 | 0.1 | -0.78 | 0.82 | 0.72 | — | 4.9 | 0.003 | 0.68 | 0.0 | 0.05 | 12.09 | 0.00 | 2.116 | 16.00 | 0.03 | 4.2 | 95.7 | 0.0 | -0.42 | 0.95 | 0.84 | 0.77 | — | 27184 | 3460 | 19 | 0 | 50 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2022-04-04 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.62 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.005 | 0.82 | 1.0 | 0.05 | 15.39 | 0.01 | 2.081 | 20.71 | 0.70 | 5.3 | 94.6 | 0.1 | -0.82 | 1.89 | 0.84 | 0.78 | 0.91 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U6D | 20663 | 2022-04-06 | 2019-08-29 | 3.6 | 3.73 | — | 3.7 | 0.002 | 0.51 | 0.0 | 0.04 | 12.89 | 0.00 | 2.227 | 6.53 | 0.00 | 3.4 | 96.6 | 0.0 | -4.06 | 0.79 | 0.84 | 1.77 | 3.7 | 0.003 | 0.54 | 0.0 | 0.05 | 15.59 | 0.00 | 2.142 | 6.80 | 0.22 | 3.3 | 96.7 | 0.0 | -0.81 | 0.47 | 0.80 | 0.84 | 2.03 | 16770 | 2156 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TFK | 10493 | 2022-04-09 | 2019-11-14 | 2.9 | 3.06 | 2.94 | 3.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 1.917 | 7.26 | 0.24 | 9.1 | 90.9 | 0.0 | -2.49 | 0.72 | 0.77 | 2.62 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 13.82 | 0.00 | 1.936 | 8.49 | 1.67 | 7.6 | 92.2 | 0.1 | -0.88 | 0.72 | 0.72 | 0.78 | 2.62 | 43237 | 2724 | 5 | 0 | 1 | 0 | 21544 | logfile |
✔ | 5MBV | 3460 | 2022-04-07 | 2016-11-08 | 3.8 | 4.14 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.21 | 0.00 | 2.172 | 6.92 | 0.74 | 4.7 | 95.2 | 0.1 | -3.37 | 0.87 | 0.81 | 0.98 | 3.8 | 0.008 | 0.95 | 1.0 | 0.04 | 13.34 | 0.00 | 2.107 | 13.54 | 0.16 | 4.0 | 96.0 | 0.0 | 1.06 | 0.86 | 0.88 | 0.83 | 1.51 | 24118 | 3014 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Wi9 | 21683 | 2022-04-04 | 2020-04-09 | 4.3 | 4.37 | 4.24 | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 12.85 | 0.00 | 2.214 | 5.37 | 0.00 | 4.2 | 95.8 | 0.0 | -3.72 | 0.77 | 0.78 | — | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 13.93 | 0.00 | 2.087 | 14.09 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.80 | 0.78 | 0.78 | — | 8550 | 1108 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W18 | 21503 | 2022-04-05 | 2020-03-03 | 4.2 | 4.20 | 4.18 | 4.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.01 | 0.00 | 2.196 | 4.79 | 0.00 | 3.0 | 97.0 | 0.0 | -3.43 | 0.71 | 0.62 | — | 4.1 | 0.007 | 0.90 | 0.0 | 0.05 | 13.19 | 0.01 | 2.028 | 17.50 | 0.09 | 12.6 | 87.4 | 0.0 | -2.30 | 1.61 | 0.78 | 0.73 | — | 13151 | 1837 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6T2U | 10369 | 2022-04-07 | 2019-10-09 | 3.6 | 4.08 | — | 3.6 | 0.002 | 0.48 | 1.0 | 0.04 | 13.04 | 0.01 | 2.211 | 4.72 | 2.98 | 2.0 | 98.0 | 0.0 | -3.59 | 0.85 | 0.71 | 0.66 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 15.81 | 0.00 | 2.156 | 13.19 | 0.25 | 4.9 | 95.1 | 0.0 | 0.47 | 3.52 | 0.87 | 0.77 | 0.69 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 6T2V | 10370 | 2022-04-07 | 2019-10-09 | 3.8 | 4.58 | — | 3.8 | 0.002 | 0.45 | 0.0 | 0.03 | 13.03 | 0.01 | 2.213 | 4.76 | 3.02 | 2.0 | 98.0 | 0.0 | -3.62 | 0.88 | 0.73 | 0.79 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.81 | 0.00 | 2.092 | 16.82 | 0.08 | 4.5 | 95.5 | 0.0 | 0.41 | 2.39 | 0.90 | 0.80 | 0.58 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 6LXD | 30005 | 2022-04-05 | 2020-02-10 | 3.9 | 3.67 | — | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.46 | 0.00 | 2.239 | 15.36 | 0.70 | 9.3 | 90.7 | 0.0 | -3.27 | 0.87 | 0.79 | 0.87 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 15.09 | 0.00 | 2.121 | 19.41 | 0.58 | 9.2 | 90.8 | 0.0 | -1.41 | 0.67 | 0.88 | 0.79 | 1.02 | 9435 | 963 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 6F40 | 4180 | 2022-04-09 | 2017-11-29 | 3.7 | 3.79 | — | 3.7 | 0.002 | 0.64 | 0.0 | 0.04 | 14.80 | 0.01 | 2.166 | 7.39 | 0.84 | 10.9 | 89.0 | 0.1 | -5.20 | 0.78 | 0.74 | 2.25 | 3.7 | 0.004 | 0.83 | 0.0 | 0.05 | 17.15 | 0.00 | 2.017 | 11.79 | 0.26 | 9.1 | 90.9 | 0.0 | -2.60 | 0.68 | 0.81 | 0.79 | 1.83 | 47396 | 5667 | 28 | 113 | 7 | 0 | 0 | logfile |
✔ | 6V4U | 21048 | 2022-04-04 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.40 | 0.01 | 2.190 | 11.46 | 0.20 | 11.9 | 88.1 | 0.0 | -1.59 | 0.78 | 0.76 | 0.67 | 1.58 | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LXE | 30006 | 2022-04-05 | 2020-02-10 | 4.2 | 4.23 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 15.29 | 0.00 | 2.030 | 16.92 | 0.14 | 8.7 | 91.3 | 0.0 | -3.22 | 0.85 | 0.70 | — | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 14.68 | 0.01 | 2.206 | 22.38 | 0.00 | 9.7 | 90.3 | 0.0 | -1.93 | 1.69 | 0.85 | 0.71 | — | 6519 | 813 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Y5H | 10697 | 2022-04-05 | 2020-02-25 | 3.0 | 3.10 | 3.04 | 3.1 | 0.002 | 0.56 | 0.0 | 0.07 | 14.94 | 0.01 | 2.238 | 2.93 | 0.70 | 4.1 | 95.9 | 0.0 | -2.50 | 0.53 | 0.56 | 0.43 | 3.1 | 0.005 | 0.64 | 0.0 | 0.05 | 17.36 | 0.00 | 2.146 | 4.25 | 3.83 | 3.2 | 96.8 | 0.0 | -0.48 | 1.11 | 0.77 | 0.87 | 3.53 | 11994 | 1470 | 18 | 0 | 33 | 0 | 0 | logfile |
✔ | 6TFJ | 10492 | 2022-04-09 | 2019-11-14 | 2.9 | 3.01 | 2.90 | 3.0 | 0.002 | 0.43 | 0.0 | 0.04 | 9.89 | 0.00 | 2.013 | 6.76 | 0.11 | 8.4 | 91.6 | 0.0 | -2.53 | 0.70 | 0.73 | 2.51 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 14.94 | 0.00 | 1.962 | 9.16 | 1.53 | 7.1 | 92.9 | 0.1 | -0.73 | 1.31 | 0.70 | 0.75 | 2.11 | 48340 | 3058 | 4 | 0 | 0 | 0 | 24098 | logfile |