Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZQi	11364	2022-07-03	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	6.43	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.86	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	6ZQJ	11366	2022-07-04	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.29	0.00	2.286	6.57	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.87	0.0	0.05	13.96	0.00	2.139	12.94	0.00	5.6	94.4	0.0	-1.11	2.03	0.70	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	7CUN	30473	2022-07-03	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.95	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.009	0.89	0.0	0.04	13.98	0.01	1.600	12.10	0.19	8.4	91.4	0.2	-0.27	1.24	0.79	0.74	1.65	57642	7839	14	0	307	0	0	logfile
✔	7KMS	22927	2022-07-07	2020-11-03	3.64	4.47	3.77	3.7	0.002	0.46	0.0	0.04	13.82	0.00	2.079	3.40	0.00	4.3	95.7	0.0	0.04	0.86	0.79	1.47	3.7	0.003	0.58	0.0	0.04	15.05	0.00	2.154	10.58	0.05	5.0	95.0	0.0	-0.33	0.42	0.88	0.83	1.40	39677	4887	20	0	71	0	0	logfile
✘	6X36	22019	2022-07-06	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✔	7CR3	30446	2022-07-04	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.86	0.0	0.04	16.84	0.00	2.167	16.43	0.24	3.4	96.6	0.0	0.79	2.00	0.60	0.73	1.15	15924	1968	8	0	0	0	0	logfile
✔	7JiL	22345	2022-07-06	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.70	0.00	1.987	6.79	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.006	0.66	0.0	0.04	15.72	0.01	1.810	6.11	4.58	11.6	88.4	0.1	-2.24	0.38	0.75	0.79	2.71	133098	5314	64	4327	325	36	0	logfile
✔	7C7A	30297	2022-07-05	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.79	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.008	0.90	1.0	0.04	16.43	0.01	1.702	13.67	2.74	6.7	93.3	0.0	-0.44	0.88	0.84	0.82	1.32	27500	2519	16	339	4	0	0	logfile
✔	7L2Z	23146	2022-07-03	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.70	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.004	0.62	0.0	0.05	14.08	0.00	1.862	7.08	0.33	6.9	93.1	0.0	-1.38	0.78	0.77	0.82	2.26	59631	3866	6	0	0	0	29676	logfile
✘	7A8P	11679	2022-07-03	2020-08-30	3.5	3.61	3.44	3.6	0.002	0.46	0.0	0.03	15.74	0.00	1.213	2.86	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7305	911	1	0	1	0	0	logfile
✔	7C79	30296	2022-07-05	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.80	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	2.9	0.010	1.02	1.0	0.04	16.54	0.01	1.652	15.13	2.35	7.5	92.4	0.0	-0.59	0.90	0.80	0.79	1.59	27324	2519	14	331	2	0	0	logfile
✔	7ND5	12276	2022-07-05	2021-01-30	3.4	3.66	—	3.5	0.002	0.52	0.0	0.04	11.27	0.00	2.167	4.27	0.32	3.6	96.3	0.0	-0.49	0.77	0.73	1.55	3.5	0.008	0.84	1.0	0.05	13.89	0.00	2.144	9.90	0.32	3.8	96.1	0.1	0.23	0.71	0.79	0.78	1.78	26710	3406	19	0	49	0	0	logfile
✔	7B0Y	11972	2022-07-07	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.48	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.006	0.76	1.0	0.04	17.28	0.00	2.099	12.40	0.14	3.2	96.8	0.0	-0.18	1.23	0.75	0.78	1.75	43792	4745	31	274	9	0	0	logfile
✔	7ND3	12274	2022-07-05	2021-01-30	3.7	3.99	—	3.8	0.002	0.51	0.0	0.04	11.23	0.00	2.159	3.57	0.64	3.7	96.2	0.1	-0.43	0.82	0.83	1.98	3.8	0.006	0.69	0.0	0.04	13.64	0.00	2.067	10.48	0.38	4.6	95.3	0.1	0.11	0.71	0.83	0.85	1.84	25050	3194	19	0	49	0	0	logfile
✔	7D59	30578	2022-07-07	2020-09-25	3.1	3.84	—	3.5	0.002	0.61	0.0	0.54	14.30	0.00	2.196	7.62	0.00	4.5	95.4	0.1	-3.52	0.85	0.79	0.90	3.5	0.006	1.10	0.0	0.17	16.20	0.00	2.123	11.58	0.34	5.7	94.3	0.0	-0.96	0.85	0.87	0.85	1.62	39898	5010	23	0	8	0	0	logfile
✔	6X87	22089	2022-07-07	2020-06-01	3.2	3.56	—	3.5	0.002	0.52	0.0	0.04	11.69	0.01	2.262	5.90	0.11	4.2	95.8	0.0	-1.72	0.60	0.62	2.46	3.5	0.008	0.87	1.0	0.04	14.89	0.01	2.096	11.35	0.38	2.7	97.3	0.0	-0.29	0.72	0.68	0.77	2.78	23173	3085	15	0	0	0	0	logfile
✔	7LQW	23490	2022-07-05	2021-02-15	4.47	7.28	4.96	4.6	0.002	0.77	1.0	0.05	13.42	0.00	0.911	5.69	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	4.7	0.003	0.65	0.0	0.04	13.02	0.00	2.100	19.03	0.08	6.7	93.2	0.1	-1.19	0.89	0.88	0.83	—	25332	3374	8	0	26	0	0	logfile
✔	7D58	30577	2022-07-07	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✔	6XAS	22114	2022-07-07	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	5.01	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.004	0.65	0.0	0.04	14.63	0.00	1.805	9.32	0.20	4.4	95.6	0.0	-0.24	0.76	0.61	0.54	1.64	46887	5804	16	73	3	0	0	logfile
✔	7JiC	22344	2022-07-03	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.84	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.008	1.09	0.0	0.04	14.28	0.00	2.219	11.50	0.17	4.0	96.0	0.0	0.43	2.00	0.68	0.81	2.60	5980	842	4	0	0	0	0	logfile

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