Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Xo7	33339	2022-12-18	2022-05-01	3.38	2.45	3.48	2.1	0.002	0.42	0.0	0.04	7.66	0.00	2.025	7.28	0.08	2.0	98.0	0.0	-3.21	0.62	0.55	1.27	2.1	0.003	0.70	0.0	0.04	13.66	0.00	2.027	10.03	0.38	4.1	95.9	0.0	-0.51	1.11	0.70	0.77	1.72	34209	4267	10	0	43	0	0	logfile
✔	7XoC	33344	2022-12-11	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.48	0.0	0.04	9.17	0.00	2.149	5.42	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.63	0.0	0.04	16.23	0.00	2.089	8.52	1.17	3.2	96.8	0.0	0.83	1.10	0.77	0.82	3.28	6432	786	5	0	5	0	0	logfile
✔	7VAF	31839	2022-12-11	2021-08-29	3.11	3.67	—	3.6	0.002	0.56	0.0	0.04	13.38	0.00	2.264	8.93	0.00	7.3	92.7	0.0	0.32	0.63	0.80	2.23	3.6	0.003	0.71	0.0	0.04	15.52	0.00	2.107	11.85	0.31	8.1	91.9	0.0	0.02	0.50	0.57	0.79	2.27	5625	734	3	0	0	0	0	logfile
✔	7PX8	13691	2022-12-14	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.79	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.49	0.0	0.04	13.57	0.00	2.222	4.24	0.23	2.4	97.6	0.0	0.12	0.20	0.79	0.88	3.28	21409	2798	4	0	0	0	0	logfile
✔	7PY5	13713	2022-12-16	2021-10-09	3.9	4.34	—	4.2	0.002	0.62	0.0	0.04	14.71	0.00	2.071	8.71	0.00	5.4	94.6	0.0	-1.41	0.80	0.79	1.13	4.2	0.006	0.75	0.0	0.05	16.65	0.00	1.877	13.78	0.49	7.5	92.5	0.0	-0.91	0.48	0.79	0.80	1.25	29959	3832	11	67	3	0	0	logfile
✔	7VAD	31837	2022-12-11	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.48	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.77	0.0	0.04	16.22	0.00	2.098	11.97	0.31	7.9	92.1	0.0	0.32	0.75	0.61	0.80	2.35	5697	743	3	0	0	0	0	logfile
✔	7XNo	33321	2022-12-13	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.51	0.0	0.04	12.91	0.00	2.215	5.90	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.37	0.00	2.207	5.84	1.81	5.2	94.7	0.1	1.75	0.29	0.69	0.87	3.07	15888	2085	15	0	3	0	0	logfile
✔	7ZDQ	14666	2022-12-11	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.55	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.0	0.003	0.50	0.0	0.04	16.19	0.00	2.212	6.38	0.30	2.4	97.6	0.0	1.36	0.26	0.72	0.84	3.18	6264	763	3	0	3	0	0	logfile
✔	7U32	26322	2022-12-16	2022-02-25	3.46	3.64	3.46	3.6	0.002	0.51	0.0	0.04	14.68	0.00	2.170	7.94	0.00	2.5	97.5	0.0	0.75	0.56	0.48	1.42	3.5	0.003	0.57	0.0	0.04	17.73	0.00	2.094	9.72	0.30	2.6	97.3	0.1	0.49	0.98	0.72	0.73	1.39	32150	3802	32	64	14	0	0	logfile
✔	7X9C	33071	2022-12-11	2022-03-15	3.0	3.24	—	3.2	0.002	0.51	0.0	0.04	10.16	0.00	2.208	8.90	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.003	0.68	0.0	0.04	14.73	0.00	2.165	12.97	2.12	3.2	96.8	0.0	-0.14	0.62	0.59	0.77	1.49	7219	945	5	0	0	0	0	logfile
✔	7LPN	23480	2022-12-13	2021-02-12	3.61	4.25	3.76	4.1	0.002	0.45	0.0	0.04	12.59	0.00	2.103	3.17	0.22	6.5	93.5	0.0	-0.80	0.81	0.82	2.63	4.1	0.006	0.68	0.0	0.04	14.17	0.00	2.241	8.26	0.44	8.4	91.6	0.0	-0.96	0.35	0.79	0.80	2.15	17787	2076	42	0	105	0	0	logfile
✔	7WHJ	32501	2022-12-15	2021-12-30	3.27	2.36	—	2.1	0.002	0.44	0.0	0.04	8.76	0.01	2.217	6.93	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.003	0.67	0.0	0.05	14.00	0.00	2.088	10.68	0.50	6.7	93.3	0.0	-1.50	0.62	0.77	0.78	2.47	27788	3499	9	0	40	0	0	logfile
✔	7Z1Z	14453	2022-12-19	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.004	0.78	0.0	0.05	18.31	0.00	2.067	15.01	0.23	3.9	96.1	0.0	-0.07	0.75	0.67	0.67	1.49	35605	4031	36	140	12	0	0	logfile
✔	7Q8S	13865	2022-12-14	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.004	0.58	0.0	0.05	13.10	0.00	2.117	4.06	0.23	3.9	96.1	0.0	0.89	0.55	0.70	0.89	3.68	19665	2485	15	0	10	0	0	logfile
✔	7MVZ	24059	2022-12-15	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.003	0.67	0.0	0.04	14.24	0.00	1.974	15.48	2.06	3.5	96.5	0.0	0.96	1.86	0.84	0.76	1.37	26733	1707	3	0	0	0	13421	logfile
✔	7UNT	26632	2022-12-11	2022-04-11	3.6	3.69	3.38	3.4	0.002	0.60	0.0	0.05	14.28	0.00	2.356	6.56	0.00	9.1	90.5	0.4	-1.58	0.47	0.73	1.84	3.5	0.004	0.67	0.0	0.05	15.69	0.00	2.256	9.21	0.70	10.3	89.4	0.2	-1.22	0.66	0.49	0.84	1.39	3270	472	1	1	0	0	0	logfile
✔	7W0D	32239	2022-12-14	2021-11-18	4.18	4.33	—	3.7	0.002	0.58	0.0	0.04	13.75	0.00	2.067	15.83	0.05	5.0	95.0	0.0	-0.30	0.91	0.80	—	3.7	0.002	0.60	0.0	0.04	14.08	0.00	1.993	15.00	0.00	5.0	95.0	0.0	-0.27	0.39	0.91	0.80	—	20322	2233	8	104	4	0	0	logfile
✔	7W0C	32238	2022-12-13	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.50	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.62	0.0	0.04	15.16	0.00	2.172	16.19	0.37	4.9	95.1	0.1	-0.01	0.46	0.86	0.74	0.42	13663	1492	5	72	2	0	0	logfile
✔	7WU2	32817	2022-12-11	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.70	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.56	0.0	0.04	16.03	0.00	2.187	7.28	2.51	3.1	96.9	0.0	0.92	1.20	0.65	0.81	3.13	7829	1010	5	0	0	0	0	logfile
✔	7N5B	24185	2022-12-12	2021-06-05	3.8	4.41	3.97	4.3	0.002	0.49	0.0	0.03	14.24	0.00	1.902	6.55	0.20	2.3	97.7	0.0	2.06	0.70	0.77	1.53	4.3	0.003	0.59	0.0	0.04	16.44	0.00	1.957	8.40	0.41	2.7	97.3	0.0	2.53	0.46	0.66	0.79	1.62	9122	1160	4	0	6	0	0	logfile

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