Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WB0	21583	2021-10-03	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.50	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.004	0.66	0.0	0.04	12.59	0.00	2.109	12.02	0.00	6.6	93.4	0.0	-1.70	1.33	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	6WB1	21584	2021-10-03	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	6.87	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.003	0.64	0.0	0.04	13.28	0.00	2.120	12.93	0.00	5.4	94.6	0.0	-0.70	0.81	0.88	0.84	—	8235	944	4	75	0	0	0	logfile
✔	6i52	4410	2021-10-03	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	9.98	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.8	0.004	0.82	0.0	0.05	17.91	0.01	2.100	23.96	0.00	11.1	88.2	0.7	-2.73	3.63	0.77	0.65	—	3856	432	4	20	0	0	0	logfile
✔	6F40	4180	2021-10-07	2017-11-29	3.7	3.79	—	3.7	0.002	0.64	0.0	0.04	14.80	0.01	2.166	7.36	0.84	10.9	89.0	0.1	-5.20	0.78	0.74	2.25	3.7	0.007	0.83	0.0	0.05	16.99	0.00	2.145	11.11	0.16	8.6	91.4	0.0	-2.42	0.69	0.81	0.79	1.73	47396	5667	28	113	7	0	0	logfile
✔	6UES	20755	2021-10-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.89	0.0	0.04	21.31	0.01	1.830	37.99	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6F41	4181	2021-10-07	2017-11-29	4.3	4.42	—	4.3	0.002	0.64	0.0	0.04	15.14	0.01	2.195	7.52	0.80	9.9	90.1	0.1	-4.92	0.82	0.78	—	4.3	0.004	0.77	0.0	0.05	15.69	0.00	1.979	14.22	0.00	9.8	90.2	0.0	-2.34	1.59	0.85	0.82	—	47788	5667	29	132	7	0	0	logfile
✔	5WVK	6694	2021-10-08	2016-12-25	4.2	4.73	—	4.3	0.002	0.43	0.0	0.04	7.38	0.00	2.151	7.46	0.01	6.6	93.3	0.2	-3.70	0.84	0.75	—	4.3	0.003	0.75	0.0	0.04	12.12	0.00	2.050	23.30	0.01	5.8	93.9	0.2	-1.03	2.39	0.88	0.81	—	105261	13392	47	0	0	0	0	logfile
✔	6GEJ	4395	2021-10-07	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.69	0.0	0.04	20.48	0.00	0.964	10.02	0.23	4.3	95.7	0.0	0.13	0.87	0.83	0.79	0.93	43702	4683	29	308	151	0	0	logfile
✔	6F44	4183	2021-10-07	2017-11-29	4.2	4.49	—	4.2	0.002	0.61	0.0	0.04	14.49	0.01	1.297	7.37	0.85	9.5	90.5	0.0	-4.81	0.87	0.76	—	4.2	0.003	0.73	0.0	0.04	14.87	0.00	2.077	12.99	0.00	7.4	92.6	0.0	-1.91	1.53	0.88	0.80	—	45251	5463	28	88	7	0	0	logfile
✔	6YDP	10778	2021-10-06	2020-03-20	3.0	3.11	3.00	3.1	0.002	0.50	0.0	0.03	15.87	0.00	1.147	8.21	1.48	3.7	96.2	0.0	-2.35	0.75	0.78	1.93	3.1	0.007	0.75	1.0	0.04	17.90	0.01	0.998	11.28	4.34	4.9	95.0	0.0	-0.31	1.57	0.80	0.87	2.15	179513	15179	122	2648	339	5	0	logfile
✔	6V3B	21032	2021-10-07	2019-11-25	2.91	3.09	—	3.0	0.002	0.51	0.0	0.03	14.38	0.01	1.895	5.91	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.006	0.73	0.0	0.04	16.25	0.01	1.760	6.96	3.20	5.1	94.9	0.1	-0.26	1.59	0.87	0.90	2.50	140290	5457	76	4535	95	398	0	logfile
✔	6V3D	21033	2021-10-06	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.003	0.63	0.0	0.04	15.92	0.01	1.936	7.47	3.53	3.9	96.0	0.1	-0.72	1.20	0.86	0.90	2.47	89040	3117	45	3007	108	231	0	logfile
✔	6KLH	0710	2021-10-05	2019-07-30	3.7	3.90	—	3.8	0.002	0.68	3.0	0.04	13.46	0.00	2.176	10.16	0.25	9.4	90.3	0.3	-3.61	0.78	0.74	0.87	3.8	0.003	0.82	0.0	0.04	16.07	0.00	1.978	13.06	0.53	9.4	90.5	0.1	-0.86	0.86	0.80	0.77	0.95	27569	3731	6	14	4	0	0	logfile
✔	6V4U	21048	2021-10-03	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.009	1.13	0.0	0.05	13.37	0.01	1.826	14.81	0.20	12.0	88.0	0.0	-1.74	0.82	0.76	0.68	1.05	7074	1106	3	0	0	0	0	logfile
✔	6LXE	30006	2021-10-03	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.76	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.004	0.86	0.0	0.05	14.77	0.01	2.176	28.70	0.00	10.6	89.4	0.0	-2.35	1.36	0.85	0.72	—	6519	813	4	0	2	0	0	logfile
✔	6NUE	0519	2021-10-04	2019-01-31	3.3	3.58	—	3.6	0.002	0.47	0.0	0.04	11.15	0.00	2.214	5.49	0.34	15.3	82.3	2.4	-5.57	0.58	0.57	0.80	3.6	0.009	1.04	1.0	0.04	16.39	0.01	1.832	12.88	0.29	8.3	91.5	0.2	-2.90	1.26	0.71	0.80	1.99	20175	2412	12	40	1	0	0	logfile
✔	6T9L	10415	2021-10-04	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.004	0.65	0.0	0.04	25.03	0.00	2.030	8.89	0.22	3.1	96.9	0.0	0.95	0.85	0.84	0.84	0.99	18157	1532	18	290	8	0	0	logfile
✔	6NUD	0516	2021-10-05	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.80	0.0	0.04	17.00	0.01	2.074	12.66	0.62	10.3	89.7	0.0	-2.19	2.06	0.73	0.76	1.58	20831	2420	13	68	1	0	0	logfile
✔	6oEM	20030	2021-10-04	2019-03-27	3.6	4.06	—	3.6	0.002	0.49	0.0	0.04	19.81	0.00	1.897	7.72	2.19	4.6	95.4	0.0	-2.82	0.87	0.77	1.51	3.6	0.005	0.81	0.0	0.04	21.83	0.00	2.022	13.20	0.06	6.6	93.4	0.0	-0.37	1.31	0.88	0.80	1.30	19707	2000	12	206	4	0	0	logfile
✔	6HD7	0202	2021-10-07	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.05	14.93	0.00	0.345	24.87	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.009	0.86	0.0	0.05	18.04	0.01	1.986	20.16	1.12	8.0	91.6	0.4	-1.31	1.94	0.76	0.87	1.76	141153	7514	52	3767	234	0	0	logfile

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