Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XQG	33395	2023-09-30	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	11.19	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.78	0.0	0.04	15.05	0.00	2.291	8.32	0.19	3.6	96.4	0.0	2.37	0.77	0.80	0.85	1.40	10206	1206	12	0	12	0	0	logfile
✔	7XoN	33353	2023-09-27	2022-05-01	3.1	3.66	2.94	3.3	0.002	0.47	0.0	0.04	12.44	0.00	2.325	9.45	0.00	1.5	98.5	0.0	2.61	0.57	0.88	2.21	3.3	0.005	0.58	0.0	0.04	14.07	0.00	2.288	10.09	0.50	1.3	98.7	0.0	2.41	0.41	0.59	0.91	2.35	3855	524	1	0	0	0	0	logfile
✔	7JGF	22325	2023-09-27	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7WVW	32860	2023-09-28	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.35	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.66	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile
✔	7F1Q	31422	2023-09-29	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.003	0.62	0.0	0.04	15.78	0.00	2.108	12.36	2.44	3.2	96.8	0.0	0.60	0.68	0.61	0.80	3.52	7123	938	4	0	0	0	0	logfile
✔	7Li7	23362	2023-09-28	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.21	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	12.76	0.00	2.215	13.30	0.00	5.8	94.2	0.0	-1.41	0.98	0.66	0.77	—	6177	765	5	0	13	0	0	logfile
✔	7CUN	30473	2023-09-29	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.88	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.007	0.83	0.0	0.05	14.25	0.00	2.026	13.10	0.73	9.6	90.2	0.2	-0.62	1.28	0.81	0.78	1.70	57642	7839	14	0	307	0	0	logfile
✔	7Y66	33635	2023-09-30	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.59	0.0	0.04	15.39	0.00	2.213	5.90	1.96	3.0	97.0	0.0	0.77	0.41	0.79	0.81	2.21	8917	1139	6	0	2	0	0	logfile
✔	7X9C	33071	2023-09-28	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.76	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	7WL2	32574	2023-09-30	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.70	0.0	0.04	14.83	0.00	2.087	11.94	0.71	6.1	93.8	0.2	0.10	0.62	0.80	0.81	2.48	10198	1330	2	0	0	0	0	logfile
✔	8DPi	27636	2023-09-28	2022-07-15	3.4	2.28	3.42	2.1	0.002	0.55	0.0	0.06	9.34	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.61	0.0	0.04	13.73	0.00	2.045	7.24	0.37	2.8	97.2	0.0	0.80	0.58	0.75	0.73	2.05	8150	1093	6	0	2	0	0	logfile
✔	6WB2	21585	2023-09-29	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.172	9.61	0.00	3.5	96.5	0.0	-0.41	0.65	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7P1J	13162	2023-09-28	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	8BDZ	15995	2023-09-27	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.004	0.58	0.0	0.04	14.08	0.00	2.208	9.58	0.27	1.7	98.3	0.0	3.07	0.44	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	7M42	23662	2023-09-28	2021-03-19	3.3	3.66	—	3.6	0.002	0.56	0.0	0.04	12.89	0.00	2.128	6.83	1.22	3.5	96.4	0.1	-2.65	0.63	0.65	3.52	3.6	0.003	0.62	0.0	0.04	14.81	0.00	2.071	7.59	0.22	5.1	94.8	0.1	-0.97	0.95	0.68	0.84	3.57	8115	1070	6	0	3	0	0	logfile
✔	7SZi	25567	2023-09-28	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7oZP	13131	2023-09-28	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.96	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	7oZN	13129	2023-09-28	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.69	0.00	2.069	15.15	0.51	3.5	96.5	0.0	-0.01	0.84	0.80	0.78	1.48	54330	6774	32	0	10	0	0	logfile
✘	7QFQ	13947	2023-09-30	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	6Y97	10733	2023-09-27	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.33	0.00	2.077	12.75	0.00	7.2	92.8	0.0	0.76	1.20	0.71	0.71	—	4366	564	4	0	0	0	0	logfile

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