Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DVU	27745	2023-04-20	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	13.39	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.004	0.57	0.0	0.04	15.42	0.00	2.030	6.08	2.01	7.8	92.2	0.0	0.24	0.42	0.70	0.84	3.74	6170	669	3	36	3	0	0	logfile
✔	8DVS	27744	2023-04-20	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	13.64	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.002	0.54	0.0	0.04	15.88	0.00	2.201	6.40	2.63	7.4	92.6	0.0	0.64	0.45	0.71	0.85	3.21	6058	682	3	26	3	0	0	logfile
✔	7UY5	26863	2023-04-28	2022-05-06	3.5	3.20	3.49	3.3	0.002	0.46	0.0	0.04	16.22	0.00	2.182	6.99	0.04	2.8	97.2	0.0	0.64	0.76	0.72	1.86	3.3	0.003	0.53	0.0	0.04	17.50	0.00	2.172	9.06	0.16	3.7	96.3	0.0	0.48	0.40	0.78	0.75	1.77	25772	2690	13	170	2	0	0	logfile
✔	7VXi	32180	2023-04-27	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	7XJL	33231	2023-04-20	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.71	0.0	0.04	15.86	0.00	2.122	16.26	0.58	3.0	97.0	0.0	0.94	0.47	0.62	0.77	1.62	8527	1137	6	0	0	0	0	logfile
✘	8A01	15044	2023-04-20	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	7VAD	31837	2023-04-20	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.79	0.0	0.05	16.16	0.00	2.118	14.59	1.08	8.1	91.9	0.0	0.14	0.78	0.62	0.81	2.30	5697	743	3	0	0	0	0	logfile
✔	6KS6	0758	2023-04-23	2019-08-23	2.99	3.11	—	3.1	0.002	0.49	0.0	0.04	8.47	0.00	2.071	8.81	0.01	3.4	96.4	0.2	-3.34	0.59	0.68	1.48	3.1	0.004	0.77	0.0	0.04	17.63	0.00	1.936	12.59	3.41	3.9	95.9	0.2	0.02	1.46	0.78	0.86	2.05	65514	8502	46	0	46	14	0	logfile
✔	7W0D	32239	2023-04-25	2021-11-18	4.18	4.33	—	3.7	0.002	0.58	0.0	0.04	13.75	0.00	2.067	15.76	0.05	5.0	95.0	0.0	-0.30	0.91	0.80	—	3.7	0.002	0.59	0.0	0.04	13.97	0.00	1.987	14.17	0.00	4.5	95.4	0.0	-0.19	0.39	0.91	0.80	—	20322	2233	8	104	4	0	0	logfile
✔	7WU2	32817	2023-04-20	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.51	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.58	0.0	0.04	16.15	0.00	2.175	7.48	2.63	3.3	96.7	0.0	0.84	1.20	0.65	0.81	3.20	7829	1010	5	0	0	0	0	logfile
✔	7DR6	30824	2023-04-21	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.05	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.91	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	6UUS	20901	2023-04-21	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	7WAC	32381	2023-04-26	2021-12-14	2.91	3.68	2.90	3.4	0.002	0.51	0.0	0.04	13.36	0.00	2.221	5.30	0.00	2.9	97.1	0.0	0.53	0.85	0.87	3.21	3.3	0.004	0.53	0.0	0.04	14.89	0.00	2.261	7.10	1.02	2.9	97.1	0.0	0.91	0.37	0.83	0.88	3.38	22016	2892	4	0	0	0	0	logfile
✘	7EQ9	31256	2023-04-22	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✔	7Uo1	26637	2023-04-24	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	27.22	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.005	1.86	0.0	0.24	27.85	0.01	1.728	26.76	1.02	7.3	92.7	0.0	-0.76	1.82	0.58	0.66	2.01	16588	112	4	455	10	0	5894	logfile
✔	7U24	26307	2023-04-25	2022-02-23	3.58	3.66	—	3.6	0.002	0.50	0.0	0.04	17.03	0.00	2.254	5.00	0.11	4.5	95.5	0.0	-0.81	0.54	0.79	2.38	3.6	0.005	0.66	0.0	0.05	16.65	0.00	2.061	9.11	0.51	5.3	94.7	0.0	0.26	0.52	0.54	0.80	2.09	20651	2770	10	0	25	0	0	logfile
✘	6PM5	20388	2023-04-23	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	8EFE	28081	2023-04-20	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.003	0.57	0.0	0.04	16.07	0.00	1.911	12.38	0.52	4.3	95.7	0.0	0.87	0.44	0.93	0.84	1.02	7135	886	3	0	2	0	0	logfile
✔	7EoQ	31227	2023-04-27	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.23	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.58	0.0	0.04	11.24	0.00	2.184	12.47	0.00	6.4	93.6	0.0	-0.51	1.21	0.88	0.78	—	24742	3144	8	0	10	0	0	logfile
✔	7EU8	31309	2023-04-24	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile

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