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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DVU | 27745 | 2023-04-20 | 2022-07-29 | 2.9 | 3.07 | 2.86 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 13.39 | 0.00 | 2.164 | 6.25 | 1.01 | 6.2 | 93.8 | 0.0 | -2.23 | 0.73 | 0.84 | 3.49 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 15.42 | 0.00 | 2.030 | 6.08 | 2.01 | 7.8 | 92.2 | 0.0 | 0.24 | 0.42 | 0.70 | 0.84 | 3.74 | 6170 | 669 | 3 | 36 | 3 | 0 | 0 | logfile |
✔ | 8DVS | 27744 | 2023-04-20 | 2022-07-29 | 3.0 | 3.15 | 2.97 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 13.64 | 0.00 | 2.271 | 7.41 | 1.32 | 6.8 | 93.2 | 0.0 | -1.94 | 0.68 | 0.80 | 2.76 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.88 | 0.00 | 2.201 | 6.40 | 2.63 | 7.4 | 92.6 | 0.0 | 0.64 | 0.45 | 0.71 | 0.85 | 3.21 | 6058 | 682 | 3 | 26 | 3 | 0 | 0 | logfile |
✔ | 7UY5 | 26863 | 2023-04-28 | 2022-05-06 | 3.5 | 3.20 | 3.49 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 16.22 | 0.00 | 2.182 | 6.99 | 0.04 | 2.8 | 97.2 | 0.0 | 0.64 | 0.76 | 0.72 | 1.86 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 17.50 | 0.00 | 2.172 | 9.06 | 0.16 | 3.7 | 96.3 | 0.0 | 0.48 | 0.40 | 0.78 | 0.75 | 1.77 | 25772 | 2690 | 13 | 170 | 2 | 0 | 0 | logfile |
✔ | 7VXi | 32180 | 2023-04-27 | 2021-11-12 | 3.4 | 2.35 | — | 2.0 | 0.002 | 0.49 | 0.0 | 0.04 | 7.29 | 0.00 | 2.125 | 3.01 | 0.00 | 4.3 | 95.5 | 0.1 | -1.83 | 0.65 | 0.60 | 1.83 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.57 | 0.00 | 2.129 | 9.76 | 0.33 | 3.3 | 96.5 | 0.2 | 0.10 | 1.42 | 0.71 | 0.69 | 2.31 | 24570 | 3144 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJL | 33231 | 2023-04-20 | 2022-04-18 | 3.5 | 3.88 | 3.61 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 13.57 | 0.00 | 2.168 | 10.62 | 0.00 | 2.4 | 97.6 | 0.0 | 0.78 | 0.63 | 0.77 | 1.72 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.86 | 0.00 | 2.122 | 16.26 | 0.58 | 3.0 | 97.0 | 0.0 | 0.94 | 0.47 | 0.62 | 0.77 | 1.62 | 8527 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-04-20 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VAD | 31837 | 2023-04-20 | 2021-08-29 | 3.41 | 4.00 | — | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 13.01 | 0.01 | 2.227 | 8.39 | 0.00 | 7.1 | 92.9 | 0.0 | 0.34 | 0.64 | 0.76 | 1.49 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 16.16 | 0.00 | 2.118 | 14.59 | 1.08 | 8.1 | 91.9 | 0.0 | 0.14 | 0.78 | 0.62 | 0.81 | 2.30 | 5697 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS6 | 0758 | 2023-04-23 | 2019-08-23 | 2.99 | 3.11 | — | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 8.47 | 0.00 | 2.071 | 8.81 | 0.01 | 3.4 | 96.4 | 0.2 | -3.34 | 0.59 | 0.68 | 1.48 | 3.1 | 0.004 | 0.77 | 0.0 | 0.04 | 17.63 | 0.00 | 1.936 | 12.59 | 3.41 | 3.9 | 95.9 | 0.2 | 0.02 | 1.46 | 0.78 | 0.86 | 2.05 | 65514 | 8502 | 46 | 0 | 46 | 14 | 0 | logfile |
✔ | 7W0D | 32239 | 2023-04-25 | 2021-11-18 | 4.18 | 4.33 | — | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 13.75 | 0.00 | 2.067 | 15.76 | 0.05 | 5.0 | 95.0 | 0.0 | -0.30 | 0.91 | 0.80 | — | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 13.97 | 0.00 | 1.987 | 14.17 | 0.00 | 4.5 | 95.4 | 0.0 | -0.19 | 0.39 | 0.91 | 0.80 | — | 20322 | 2233 | 8 | 104 | 4 | 0 | 0 | logfile |
✔ | 7WU2 | 32817 | 2023-04-20 | 2022-02-05 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 12.86 | 0.00 | 2.200 | 6.51 | 0.00 | 2.1 | 97.9 | 0.0 | 0.79 | 0.64 | 0.77 | 2.92 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 16.15 | 0.00 | 2.175 | 7.48 | 2.63 | 3.3 | 96.7 | 0.0 | 0.84 | 1.20 | 0.65 | 0.81 | 3.20 | 7829 | 1010 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DR6 | 30824 | 2023-04-21 | 2020-12-26 | 4.1 | 4.22 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 7.81 | 0.00 | 2.196 | 10.05 | 0.12 | 4.9 | 94.9 | 0.1 | -2.74 | 0.68 | 0.63 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 13.22 | 0.00 | 2.079 | 15.91 | 0.06 | 3.7 | 96.2 | 0.0 | 0.18 | 2.26 | 0.73 | 0.72 | — | 59957 | 7661 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UUS | 20901 | 2023-04-21 | 2019-10-31 | 2.4 | 2.10 | 2.30 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 17.13 | 0.00 | 2.214 | 7.50 | 3.27 | 2.8 | 97.2 | 0.0 | -2.25 | 0.57 | 0.73 | 3.22 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.74 | 0.00 | 2.183 | 9.20 | 1.84 | 3.6 | 96.4 | 0.0 | 0.64 | 1.01 | 0.63 | 0.78 | 3.41 | 9308 | 1190 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAC | 32381 | 2023-04-26 | 2021-12-14 | 2.91 | 3.68 | 2.90 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.36 | 0.00 | 2.221 | 5.30 | 0.00 | 2.9 | 97.1 | 0.0 | 0.53 | 0.85 | 0.87 | 3.21 | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 14.89 | 0.00 | 2.261 | 7.10 | 1.02 | 2.9 | 97.1 | 0.0 | 0.91 | 0.37 | 0.83 | 0.88 | 3.38 | 22016 | 2892 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-04-22 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo1 | 26637 | 2023-04-24 | 2022-04-12 | 3.2 | 3.31 | — | 3.3 | 0.002 | 4.43 | 0.0 | 0.10 | 27.22 | 0.00 | 1.799 | 11.73 | 0.00 | 4.5 | 92.7 | 2.7 | 0.03 | 0.51 | 0.54 | 2.38 | 3.2 | 0.005 | 1.86 | 0.0 | 0.24 | 27.85 | 0.01 | 1.728 | 26.76 | 1.02 | 7.3 | 92.7 | 0.0 | -0.76 | 1.82 | 0.58 | 0.66 | 2.01 | 16588 | 112 | 4 | 455 | 10 | 0 | 5894 | logfile |
✔ | 7U24 | 26307 | 2023-04-25 | 2022-02-23 | 3.58 | 3.66 | — | 3.6 | 0.002 | 0.50 | 0.0 | 0.04 | 17.03 | 0.00 | 2.254 | 5.00 | 0.11 | 4.5 | 95.5 | 0.0 | -0.81 | 0.54 | 0.79 | 2.38 | 3.6 | 0.005 | 0.66 | 0.0 | 0.05 | 16.65 | 0.00 | 2.061 | 9.11 | 0.51 | 5.3 | 94.7 | 0.0 | 0.26 | 0.52 | 0.54 | 0.80 | 2.09 | 20651 | 2770 | 10 | 0 | 25 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-04-23 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 8EFE | 28081 | 2023-04-20 | 2022-09-08 | 3.8 | 4.45 | 3.82 | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 14.48 | 0.00 | 1.948 | 8.30 | 0.52 | 3.8 | 96.2 | 0.0 | 1.15 | 0.93 | 0.82 | 1.08 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 16.07 | 0.00 | 1.911 | 12.38 | 0.52 | 4.3 | 95.7 | 0.0 | 0.87 | 0.44 | 0.93 | 0.84 | 1.02 | 7135 | 886 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7EoQ | 31227 | 2023-04-27 | 2021-04-22 | 4.1 | 4.43 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 10.23 | 0.00 | 2.195 | 7.68 | 2.14 | 4.7 | 95.3 | 0.0 | 0.09 | 0.86 | 0.74 | — | 4.1 | 0.002 | 0.58 | 0.0 | 0.04 | 11.24 | 0.00 | 2.184 | 12.47 | 0.00 | 6.4 | 93.6 | 0.0 | -0.51 | 1.21 | 0.88 | 0.78 | — | 24742 | 3144 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7EU8 | 31309 | 2023-04-24 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.10 | 7.80 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.002 | 0.62 | 0.0 | 0.06 | 8.46 | 0.00 | 2.129 | 7.57 | 0.00 | 3.8 | 96.0 | 0.2 | 0.14 | 1.37 | 0.79 | 0.69 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |