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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NUE | 0519 | 2022-12-14 | 2019-01-31 | 3.3 | 3.58 | — | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 11.15 | 0.00 | 2.214 | 5.51 | 0.34 | 15.3 | 82.3 | 2.4 | -5.57 | 0.58 | 0.57 | 0.80 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 16.26 | 0.00 | 2.071 | 9.87 | 0.43 | 7.4 | 92.5 | 0.2 | -2.27 | 1.23 | 0.70 | 0.79 | 1.79 | 20175 | 2412 | 12 | 40 | 1 | 0 | 0 | logfile |
✔ | 7LBE | 23252 | 2022-12-13 | 2021-01-07 | 2.9 | 3.31 | — | 3.2 | 0.002 | 0.44 | 0.0 | 0.04 | 12.74 | 0.00 | 2.200 | 3.62 | 0.00 | 2.8 | 97.2 | 0.0 | 1.20 | 0.69 | 0.82 | 3.12 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 15.74 | 0.00 | 2.115 | 7.32 | 1.57 | 3.4 | 96.6 | 0.0 | 0.72 | 0.44 | 0.70 | 0.85 | 2.90 | 13511 | 1653 | 13 | 0 | 27 | 0 | 0 | logfile |
✔ | 6V3D | 21033 | 2022-12-16 | 2019-11-25 | 2.95 | 3.39 | — | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 14.48 | 0.01 | 1.698 | 5.98 | 0.04 | 2.8 | 97.1 | 0.1 | -1.93 | 0.85 | 0.86 | 2.47 | 3.2 | 0.007 | 0.71 | 0.0 | 0.04 | 15.95 | 0.01 | 1.748 | 7.82 | 3.49 | 4.7 | 95.2 | 0.1 | -0.89 | 1.18 | 0.86 | 0.90 | 2.61 | 89040 | 3117 | 45 | 3007 | 108 | 231 | 0 | logfile |
✔ | 6WTS | 21898 | 2022-12-12 | 2020-05-03 | 3.3 | 3.77 | — | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 11.63 | 0.00 | 2.272 | 5.18 | 0.41 | 3.9 | 96.0 | 0.1 | -1.65 | 0.59 | 0.72 | 2.93 | 3.8 | 0.003 | 0.67 | 0.0 | 0.05 | 15.37 | 0.00 | 2.164 | 11.05 | 0.71 | 3.4 | 96.5 | 0.1 | -0.64 | 0.59 | 0.49 | 0.79 | 2.52 | 9863 | 1287 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UVA | 20906 | 2022-12-12 | 2019-11-01 | 2.3 | 2.12 | 2.31 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 18.04 | 0.00 | 2.207 | 6.97 | 3.36 | 3.2 | 96.8 | 0.0 | -2.29 | 0.63 | 0.72 | 2.83 | 2.3 | 0.003 | 0.59 | 0.0 | 0.04 | 18.45 | 0.00 | 2.147 | 8.77 | 3.45 | 4.2 | 95.8 | 0.0 | 0.29 | 1.31 | 0.65 | 0.78 | 2.85 | 9561 | 1199 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EBF | 31053 | 2022-12-13 | 2021-03-09 | 2.63 | 2.31 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 11.01 | 0.00 | 2.294 | 5.92 | 2.11 | 2.0 | 98.0 | 0.0 | 1.61 | 0.65 | 0.78 | 2.64 | 2.3 | 0.004 | 0.56 | 0.0 | 0.04 | 15.96 | 0.00 | 2.270 | 9.38 | 1.88 | 3.1 | 96.9 | 0.0 | 0.84 | 0.57 | 0.67 | 0.81 | 2.99 | 13052 | 1640 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2022-12-11 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.6 | 0.003 | 0.54 | 0.0 | 0.03 | 12.79 | 0.00 | 1.898 | 99.07 | 0.00 | 5.9 | 94.1 | 0.0 | 0.89 | 1.75 | 0.67 | 0.71 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 6Y5H | 10697 | 2022-12-12 | 2020-02-25 | 3.0 | 3.10 | 3.04 | 3.1 | 0.002 | 0.56 | 0.0 | 0.07 | 14.94 | 0.01 | 2.238 | 3.19 | 0.70 | 4.1 | 95.9 | 0.0 | -2.50 | 0.53 | 0.56 | 0.43 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 17.13 | 0.00 | 2.171 | 4.21 | 3.59 | 1.7 | 98.3 | 0.0 | -0.28 | 1.11 | 0.74 | 0.86 | 3.44 | 11994 | 1470 | 18 | 0 | 33 | 0 | 0 | logfile |
✔ | 7JGD | 22323 | 2022-12-14 | 2020-07-19 | 3.38 | 3.68 | — | 3.6 | 0.002 | 0.43 | 0.0 | 0.05 | 12.94 | 0.00 | 2.123 | 11.53 | 0.00 | 3.9 | 96.1 | 0.0 | 1.18 | 0.61 | 0.66 | 2.22 | 3.6 | 0.003 | 0.54 | 0.0 | 0.06 | 14.86 | 0.00 | 1.946 | 15.03 | 0.08 | 7.8 | 92.2 | 0.0 | 0.36 | 0.53 | 0.63 | 0.71 | 1.81 | 20292 | 1435 | 1 | 0 | 0 | 0 | 8505 | logfile |
✔ | 6W7W | 21573 | 2022-12-15 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 15.50 | 0.00 | 2.156 | 10.72 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.007 | 0.80 | 0.0 | 0.04 | 16.98 | 0.01 | 2.085 | 26.98 | 0.47 | 8.0 | 92.0 | 0.0 | -1.57 | 0.61 | 0.92 | 0.85 | 1.34 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 7CUN | 30473 | 2022-12-12 | 2020-08-23 | 3.5 | 3.56 | — | 3.4 | 0.002 | 0.64 | 2.0 | 0.05 | 10.98 | 0.00 | 1.905 | 6.95 | 0.00 | 6.7 | 92.6 | 0.7 | -2.80 | 0.79 | 0.73 | 1.40 | 3.4 | 0.012 | 1.01 | 0.0 | 0.05 | 13.95 | 0.01 | 1.967 | 15.53 | 0.77 | 9.7 | 90.0 | 0.3 | -1.15 | 1.27 | 0.80 | 0.75 | 1.91 | 57642 | 7839 | 14 | 0 | 307 | 0 | 0 | logfile |
✔ | 6WB1 | 21584 | 2022-12-11 | 2020-03-26 | 4.7 | 4.87 | — | 4.6 | 0.002 | 0.50 | 0.0 | 0.04 | 12.49 | 0.00 | 2.204 | 7.21 | 0.55 | 4.5 | 95.4 | 0.1 | -4.82 | 0.86 | 0.80 | — | 4.6 | 0.002 | 0.60 | 0.0 | 0.04 | 13.12 | 0.00 | 2.159 | 9.50 | 0.00 | 3.7 | 96.3 | 0.0 | -0.70 | 0.70 | 0.87 | 0.83 | — | 8235 | 944 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6WB2 | 21585 | 2022-12-12 | 2020-03-26 | 4.5 | 4.71 | — | 4.5 | 0.002 | 0.44 | 0.0 | 0.04 | 11.33 | 0.00 | 2.293 | 7.98 | 0.17 | 3.1 | 96.9 | 0.0 | -3.59 | 0.86 | 0.80 | — | 4.5 | 0.002 | 0.55 | 0.0 | 0.04 | 11.96 | 0.00 | 2.190 | 9.09 | 0.00 | 3.0 | 97.0 | 0.0 | -0.28 | 0.63 | 0.86 | 0.82 | — | 8407 | 946 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6Y97 | 10733 | 2022-12-11 | 2020-03-06 | 4.33 | 4.65 | — | 4.5 | 0.002 | 0.58 | 0.0 | 0.04 | 14.61 | 0.00 | 2.147 | 7.28 | 0.00 | 5.2 | 94.8 | 0.0 | 1.11 | 0.69 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 13.16 | 0.00 | 2.048 | 14.34 | 0.00 | 6.7 | 93.3 | 0.0 | 0.68 | 0.90 | 0.71 | 0.71 | — | 4366 | 564 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YV1 | 10940 | 2022-12-18 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2022-12-16 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 12.29 | 0.00 | 2.283 | 3.48 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 4.0 | 0.006 | 0.76 | 0.0 | 0.04 | 15.57 | 0.01 | 1.975 | 24.10 | 1.72 | 10.4 | 89.6 | 0.1 | -2.05 | 2.61 | 0.78 | 0.76 | 0.98 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 6WB0 | 21583 | 2022-12-12 | 2020-03-26 | 4.2 | 4.26 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.69 | 0.00 | 2.131 | 11.89 | 0.81 | 4.1 | 95.9 | 0.0 | -4.46 | 0.79 | 0.74 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.40 | 0.00 | 2.152 | 9.70 | 0.00 | 4.2 | 95.8 | 0.0 | -1.33 | 1.28 | 0.81 | 0.78 | — | 8518 | 948 | 4 | 77 | 0 | 0 | 0 | logfile |
✔ | 6Z3Y | 11066 | 2022-12-11 | 2020-05-22 | 3.51 | 3.78 | 3.53 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 11.75 | 0.00 | 2.269 | 9.16 | 1.68 | 5.6 | 94.4 | 0.0 | 0.09 | 0.59 | 0.70 | 0.69 | 3.6 | 0.003 | 0.84 | 0.0 | 0.05 | 14.86 | 0.00 | 2.015 | 17.59 | 0.31 | 7.9 | 92.1 | 0.0 | -0.73 | 0.71 | 0.59 | 0.71 | 1.24 | 6131 | 771 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLP | 4274 | 2022-12-15 | 2018-01-26 | 4.1 | 4.58 | 4.28 | 4.2 | 0.002 | 0.57 | 0.0 | 0.04 | 12.69 | 0.00 | 2.062 | 8.97 | 0.04 | 6.3 | 93.7 | 0.1 | -3.10 | 0.85 | 0.83 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.02 | 0.00 | 2.144 | 13.86 | 0.00 | 9.0 | 91.0 | 0.1 | -1.38 | 1.37 | 0.86 | 0.85 | — | 26512 | 3184 | 9 | 80 | 3 | 0 | 0 | logfile |
✔ | 7KAT | 22783 | 2022-12-12 | 2020-10-01 | 4.4 | 5.04 | 4.41 | 4.5 | 0.002 | 0.51 | 0.0 | 0.04 | 11.32 | 0.00 | 2.185 | 6.94 | 0.00 | 1.9 | 98.1 | 0.0 | -0.63 | 0.65 | 0.83 | — | 4.5 | 0.002 | 0.57 | 0.0 | 0.04 | 12.07 | 0.00 | 2.070 | 9.45 | 0.00 | 2.1 | 97.9 | 0.0 | 2.26 | 1.32 | 0.65 | 0.85 | — | 10431 | 1340 | 6 | 0 | 0 | 0 | 0 | logfile |