Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VPC	21308	2023-04-23	2020-02-03	3.2	3.51	3.17	3.2	0.002	0.56	0.0	0.04	16.94	0.00	2.121	5.85	1.58	2.2	97.8	0.0	-1.99	0.83	0.79	1.63	3.2	0.003	0.62	0.0	0.04	17.92	0.00	2.080	7.75	0.14	2.8	97.2	0.0	0.41	1.24	0.85	0.83	1.95	16309	1633	9	154	5	0	0	logfile
✔	8CYC	27074	2023-04-28	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.20	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.2	0.008	0.79	0.0	0.05	15.75	0.00	2.062	17.01	3.06	8.2	91.6	0.2	-1.16	0.55	0.76	0.77	1.84	28697	3677	6	0	0	0	0	logfile
✘	7Y5H	33620	2023-04-20	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4704	600	4	0	4	0	0	logfile
✔	8CY9	27071	2023-04-28	2022-05-23	2.9	3.60	3.07	3.3	0.002	0.51	0.0	0.04	13.25	0.00	2.199	6.57	0.19	3.8	96.1	0.1	0.62	0.78	0.81	1.75	3.3	0.005	0.60	0.0	0.04	14.78	0.00	2.126	10.23	1.20	4.9	95.1	0.1	0.07	1.59	0.78	0.82	2.20	28469	3663	6	0	0	0	0	logfile
✔	6T2V	10370	2023-04-26	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	8H8A	34540	2023-04-20	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.003	0.66	0.0	0.04	15.54	0.00	2.234	6.27	0.22	11.9	87.9	0.2	-2.50	1.14	0.77	0.89	3.84	8454	1039	2	0	0	0	0	logfile
✔	7ZZY	15041	2023-04-21	2022-05-26	3.3	4.29	3.23	3.7	0.002	0.47	0.0	0.04	16.51	0.00	2.238	2.10	0.31	2.8	97.2	0.0	1.09	0.82	0.78	2.57	3.7	0.004	0.78	0.0	0.04	17.47	0.00	2.247	9.31	0.00	3.0	97.0	0.0	1.66	1.83	0.89	0.83	2.44	8784	1104	16	0	0	24	0	logfile
✔	6WB2	21585	2023-04-20	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7WKS	32568	2023-04-20	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile
✔	7JGD	22323	2023-04-25	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7F1R	31423	2023-04-20	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.28	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7WVU	32858	2023-04-20	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.52	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.003	0.59	0.0	0.04	15.27	0.00	2.230	11.78	0.14	3.2	96.8	0.0	0.55	1.14	0.61	0.78	2.12	6862	909	5	0	0	0	0	logfile
✔	6Li3	0902	2023-04-20	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.003	0.65	0.0	0.04	16.65	0.00	2.150	9.72	0.33	3.8	96.2	0.0	-0.12	1.35	0.59	0.77	1.61	8289	1045	5	0	0	0	0	logfile
✔	7WAZ	32390	2023-04-22	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	18.60	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.005	0.75	0.0	0.04	19.74	0.00	2.074	22.64	0.12	7.5	92.3	0.2	-0.24	1.40	0.70	0.64	0.81	11034	952	4	157	0	0	0	logfile
✔	7WVW	32860	2023-04-20	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.35	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.66	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile
✔	6WB1	21584	2023-04-20	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.002	0.58	0.0	0.04	13.01	0.00	2.198	8.49	0.00	3.6	96.4	0.0	-0.61	0.69	0.87	0.83	—	8235	944	4	75	0	0	0	logfile
✔	7XMS	33303	2023-04-20	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.76	0.0	0.04	14.98	0.00	2.040	14.79	1.73	3.7	96.3	0.0	-0.47	0.80	0.61	0.76	2.09	8370	1113	6	0	0	0	0	logfile
✔	8E4o	27894	2023-04-19	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7UM7	26599	2023-04-20	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✘	6WB0	21583	2023-04-20	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	948	4	77	0	0	0	logfile

• ← previous
• Page 7 of 372
• next →