Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C8Y	16495	2023-11-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	13.66	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.006	0.63	0.0	0.04	15.09	0.00	1.994	9.98	0.43	8.0	91.9	0.1	-1.19	0.45	0.80	0.87	2.62	77316	2566	25	2667	0	0	0	logfile
✔	8C94	16501	2023-11-13	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	13.06	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.006	0.71	0.0	0.04	15.40	0.00	1.973	24.31	0.60	10.1	89.7	0.1	-1.71	1.42	0.81	0.84	1.30	54560	2070	21	1787	0	0	0	logfile
✔	8E4o	27894	2023-11-13	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7BL5	12218	2023-11-22	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.79	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.006	0.75	1.0	0.04	16.15	0.01	1.891	21.98	1.27	9.9	90.1	0.0	-1.98	0.64	0.77	0.84	1.12	98927	4348	46	3033	3	27	0	logfile
✘	7ZMD	14795	2023-11-19	2022-04-19	2.93	3.18	2.97	3.2	0.002	0.52	0.0	0.08	13.13	0.01	2.146	3.80	0.00	2.5	97.5	0.0	0.93	0.68	0.78	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18400	1191	2	0	0	0	9106	logfile
✔	7YCG	33738	2023-11-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	7JGD	22323	2023-11-17	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7ZEP	14691	2023-11-15	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.5	0.003	0.54	0.0	0.04	15.93	0.00	2.176	6.61	0.14	2.7	97.3	0.0	1.20	1.12	0.72	0.83	2.54	13324	1654	4	0	2	0	0	logfile
✔	7o72	12743	2023-11-18	2021-04-12	3.4	3.66	3.39	3.4	0.002	0.47	1.0	0.04	14.35	0.00	1.971	4.02	0.03	2.2	97.8	0.0	1.40	0.86	0.83	1.86	3.4	0.005	0.70	0.0	0.04	16.90	0.00	1.974	12.30	0.23	3.6	96.4	0.0	0.59	0.85	0.87	0.86	1.63	73664	8867	43	130	22	0	0	logfile
✔	7ZZY	15041	2023-11-14	2022-05-26	3.3	4.29	3.23	3.7	0.002	0.47	0.0	0.04	16.51	0.00	2.238	2.10	0.31	2.8	97.2	0.0	1.09	0.82	0.78	2.57	3.7	0.004	0.78	0.0	0.04	17.47	0.00	2.247	9.31	0.00	3.0	97.0	0.0	1.66	1.83	0.89	0.83	2.44	8784	1104	16	0	0	24	0	logfile
✘	8GVC	34290	2023-11-14	2022-09-14	2.89	3.10	2.90	3.2	0.002	0.48	0.0	0.04	14.66	0.00	1.670	13.40	1.14	2.0	97.8	0.2	2.06	0.64	0.82	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8080	1022	4	0	2	0	0	logfile
✔	6XLB	22238	2023-11-15	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile
✔	7FAS	31505	2023-11-15	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.25	0.00	2.192	9.70	0.18	4.1	95.9	0.0	1.07	0.43	0.73	0.75	0.97	10173	1229	1	0	0	0	0	logfile
✔	7WSE	32755	2023-11-15	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.63	0.0	0.04	15.09	0.00	2.026	7.56	1.73	2.7	97.3	0.0	0.62	1.41	0.60	0.79	2.12	6431	791	3	0	1	0	0	logfile
✔	7LB8	23251	2023-11-15	2021-01-07	3.4	3.48	—	3.5	0.002	0.62	1.0	0.04	14.95	0.00	2.093	9.76	2.66	4.7	95.0	0.3	-1.98	0.58	0.72	1.54	3.5	0.005	0.79	0.0	0.04	16.35	0.01	2.176	12.46	0.38	5.3	94.6	0.1	-0.21	0.95	0.66	0.81	1.67	10439	1405	4	0	0	0	0	logfile
✔	8F6H	28883	2023-11-17	2022-11-16	3.9	4.17	3.97	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.003	0.54	0.0	0.04	15.26	0.00	1.817	9.05	0.18	6.5	93.2	0.2	0.26	0.49	0.72	0.79	2.22	20768	1358	8	0	6	0	10347	logfile
✔	7EPC	31237	2023-11-16	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.004	0.70	0.0	0.04	14.62	0.00	2.130	9.77	0.19	4.3	95.7	0.0	-0.65	1.67	0.73	0.73	—	11216	1564	2	0	0	0	0	logfile
✔	8AE1	15378	2023-11-18	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.002	0.52	0.0	0.04	13.95	0.00	2.185	4.54	0.05	2.8	97.2	0.0	-0.28	0.28	0.77	0.88	3.48	21504	2859	6	0	18	0	0	logfile
✔	7VDC	31913	2023-11-15	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.002	0.53	0.0	0.04	16.32	0.00	2.093	9.92	0.18	3.6	96.4	0.0	0.81	0.36	0.63	0.76	0.97	10472	1372	4	0	0	0	0	logfile
✔	7VD9	31911	2023-11-16	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile

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