Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NUE	0519	2022-12-14	2019-01-31	3.3	3.58	—	3.6	0.002	0.47	0.0	0.04	11.15	0.00	2.214	5.51	0.34	15.3	82.3	2.4	-5.57	0.58	0.57	0.80	3.6	0.003	0.73	0.0	0.04	16.26	0.00	2.071	9.87	0.43	7.4	92.5	0.2	-2.27	1.23	0.70	0.79	1.79	20175	2412	12	40	1	0	0	logfile
✔	7LBE	23252	2022-12-13	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.62	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.60	0.0	0.04	15.74	0.00	2.115	7.32	1.57	3.4	96.6	0.0	0.72	0.44	0.70	0.85	2.90	13511	1653	13	0	27	0	0	logfile
✔	6V3D	21033	2022-12-16	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.98	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.007	0.71	0.0	0.04	15.95	0.01	1.748	7.82	3.49	4.7	95.2	0.1	-0.89	1.18	0.86	0.90	2.61	89040	3117	45	3007	108	231	0	logfile
✔	6WTS	21898	2022-12-12	2020-05-03	3.3	3.77	—	3.8	0.002	0.48	0.0	0.04	11.63	0.00	2.272	5.18	0.41	3.9	96.0	0.1	-1.65	0.59	0.72	2.93	3.8	0.003	0.67	0.0	0.05	15.37	0.00	2.164	11.05	0.71	3.4	96.5	0.1	-0.64	0.59	0.49	0.79	2.52	9863	1287	8	0	10	0	0	logfile
✔	6UVA	20906	2022-12-12	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.97	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.59	0.0	0.04	18.45	0.00	2.147	8.77	3.45	4.2	95.8	0.0	0.29	1.31	0.65	0.78	2.85	9561	1199	7	0	0	0	0	logfile
✔	7EBF	31053	2022-12-13	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.92	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.004	0.56	0.0	0.04	15.96	0.00	2.270	9.38	1.88	3.1	96.9	0.0	0.84	0.57	0.67	0.81	2.99	13052	1640	4	0	0	0	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✔	6Y5H	10697	2022-12-12	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	3.19	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.003	0.55	0.0	0.04	17.13	0.00	2.171	4.21	3.59	1.7	98.3	0.0	-0.28	1.11	0.74	0.86	3.44	11994	1470	18	0	33	0	0	logfile
✔	7JGD	22323	2022-12-14	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.53	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.54	0.0	0.06	14.86	0.00	1.946	15.03	0.08	7.8	92.2	0.0	0.36	0.53	0.63	0.71	1.81	20292	1435	1	0	0	0	8505	logfile
✔	6W7W	21573	2022-12-15	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.72	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.80	0.0	0.04	16.98	0.01	2.085	26.98	0.47	8.0	92.0	0.0	-1.57	0.61	0.92	0.85	1.34	26883	1047	10	871	0	0	0	logfile
✔	7CUN	30473	2022-12-12	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.95	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.012	1.01	0.0	0.05	13.95	0.01	1.967	15.53	0.77	9.7	90.0	0.3	-1.15	1.27	0.80	0.75	1.91	57642	7839	14	0	307	0	0	logfile
✔	6WB1	21584	2022-12-11	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.002	0.60	0.0	0.04	13.12	0.00	2.159	9.50	0.00	3.7	96.3	0.0	-0.70	0.70	0.87	0.83	—	8235	944	4	75	0	0	0	logfile
✔	6WB2	21585	2022-12-12	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.98	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.55	0.0	0.04	11.96	0.00	2.190	9.09	0.00	3.0	97.0	0.0	-0.28	0.63	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6Y97	10733	2022-12-11	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.16	0.00	2.048	14.34	0.00	6.7	93.3	0.0	0.68	0.90	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✘	6YV1	10940	2022-12-18	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6GC0	4379	2022-12-16	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.48	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	4.0	0.006	0.76	0.0	0.04	15.57	0.01	1.975	24.10	1.72	10.4	89.6	0.1	-2.05	2.61	0.78	0.76	0.98	84138	2950	28	2848	0	0	0	logfile
✔	6WB0	21583	2022-12-12	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.003	0.59	0.0	0.04	12.40	0.00	2.152	9.70	0.00	4.2	95.8	0.0	-1.33	1.28	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	6Z3Y	11066	2022-12-11	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.84	0.0	0.05	14.86	0.00	2.015	17.59	0.31	7.9	92.1	0.0	-0.73	0.71	0.59	0.71	1.24	6131	771	2	0	0	0	0	logfile
✔	6FLP	4274	2022-12-15	2018-01-26	4.1	4.58	4.28	4.2	0.002	0.57	0.0	0.04	12.69	0.00	2.062	8.97	0.04	6.3	93.7	0.1	-3.10	0.85	0.83	—	4.2	0.004	0.68	0.0	0.04	15.02	0.00	2.144	13.86	0.00	9.0	91.0	0.1	-1.38	1.37	0.86	0.85	—	26512	3184	9	80	3	0	0	logfile
✔	7KAT	22783	2022-12-12	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile

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