Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6F40	4180	2023-07-19	2017-11-29	3.7	3.79	—	3.7	0.002	0.64	0.0	0.04	14.80	0.01	2.166	7.42	0.84	10.9	89.0	0.1	-5.20	0.78	0.74	2.25	3.7	0.003	0.70	0.0	0.04	16.91	0.00	2.123	10.15	0.38	7.6	92.4	0.0	-2.29	0.67	0.81	0.79	1.78	47396	5667	28	113	7	0	0	logfile
✔	7A97	11687	2023-07-16	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.87	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.006	0.78	0.0	0.04	9.24	0.00	2.040	16.92	0.00	5.8	94.2	0.0	-1.11	2.57	0.90	0.84	—	34626	4373	5	0	0	0	0	logfile
✔	7VAG	31840	2023-07-03	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.003	0.77	0.0	0.04	16.03	0.00	2.161	12.23	0.31	8.1	91.9	0.0	-0.04	1.36	0.55	0.77	1.83	5697	743	3	0	0	0	0	logfile
✔	5MBV	3460	2023-07-11	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	7UPN	26673	2023-07-04	2022-04-16	3.5	4.29	3.52	4.0	0.002	0.53	0.0	0.04	14.66	0.00	2.284	6.79	0.00	7.4	92.3	0.4	-1.27	0.86	0.78	1.41	4.0	0.004	0.69	0.0	0.04	16.73	0.01	2.198	10.84	0.11	8.8	90.5	0.7	-1.95	1.26	0.87	0.82	1.83	8872	1100	10	0	2	0	0	logfile
✘	5GW5	9541	2023-07-06	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7U5i	26351	2023-07-11	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.72	0.0	0.05	16.39	0.00	2.159	15.05	0.16	2.1	97.9	0.0	-0.02	0.67	0.67	0.78	1.94	23539	2904	16	0	0	123	0	logfile
✔	8A9Y	15288	2023-07-11	2022-06-29	3.5	4.25	3.38	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.004	0.56	0.0	0.04	11.59	0.00	1.888	9.02	0.24	4.9	95.0	0.1	-0.16	1.54	0.73	0.86	2.90	23688	2988	8	0	2	0	0	logfile
✔	7CYN	30501	2023-07-10	2020-09-03	4.2	5.28	—	4.4	0.002	0.52	0.0	0.04	12.56	0.00	2.204	9.21	0.09	5.6	94.4	0.1	-2.47	0.67	0.65	—	4.4	0.003	0.73	0.0	0.04	12.81	0.00	2.107	19.70	0.00	5.7	94.3	0.0	-0.47	1.48	0.73	0.81	—	20432	2538	8	0	6	0	0	logfile
✔	8G6K	29772	2023-07-05	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6V3E	21034	2023-07-20	2019-11-25	4.4	4.86	—	3.6	0.002	0.47	0.0	0.03	14.33	0.02	2.039	11.24	0.05	2.4	97.6	0.0	-1.40	0.88	0.74	—	3.6	0.005	0.78	0.0	0.04	16.68	0.01	1.560	32.14	0.11	5.8	94.2	0.0	-0.87	1.76	0.90	0.78	—	50850	2311	20	1528	0	0	0	logfile
✔	7TD2	25821	2023-07-07	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.84	0.00	2.175	2.14	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.004	0.51	0.0	0.04	14.67	0.00	1.952	5.24	0.14	3.5	96.5	0.0	1.43	1.23	0.54	0.79	3.17	13528	904	5	0	1	0	6632	logfile
✘	7XL3	33271	2023-07-12	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✔	7AoF	11843	2023-07-15	2020-10-14	2.98	3.67	—	3.2	0.002	0.46	0.0	0.05	9.85	0.00	1.984	4.35	1.81	4.9	95.0	0.1	0.39	0.90	0.87	3.30	3.2	0.003	0.61	0.0	0.04	12.79	0.00	2.025	7.62	1.35	5.4	94.6	0.0	0.37	1.92	0.91	0.89	3.13	32727	4034	12	0	5	0	0	logfile
✔	8ESC	28575	2023-07-18	2022-10-13	3.1	3.13	3.05	3.2	0.002	0.51	0.0	0.04	13.90	0.00	2.156	6.96	0.02	5.0	95.0	0.0	-0.12	0.79	0.79	2.12	3.1	0.003	0.58	0.0	0.04	15.87	0.00	1.996	8.72	0.17	5.2	94.8	0.0	0.42	0.53	0.84	0.87	1.92	43279	5300	7	0	3	0	0	logfile
✔	8DVS	27744	2023-07-04	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	13.64	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.002	0.54	0.0	0.04	15.88	0.00	2.201	6.40	2.63	7.4	92.6	0.0	0.64	0.45	0.71	0.85	3.21	6058	682	3	26	3	0	0	logfile
✔	7WD7	32433	2023-07-16	2021-12-21	3.5	3.71	—	3.6	0.002	0.60	0.0	0.04	8.23	0.00	2.158	7.78	0.03	4.5	95.4	0.1	-1.98	0.62	0.55	0.91	3.6	0.003	0.66	0.0	0.04	13.84	0.00	2.048	10.80	0.23	4.0	96.0	0.0	-0.24	3.46	0.68	0.69	1.16	35322	4530	9	0	0	0	0	logfile
✔	7VAD	31837	2023-07-03	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.79	0.0	0.05	16.16	0.00	2.118	14.59	1.08	8.1	91.9	0.0	0.14	0.78	0.62	0.81	2.30	5697	743	3	0	0	0	0	logfile
✘	7oN1	12993	2023-07-06	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.28	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11150	777	12	246	0	0	0	logfile
✔	7WoB	32647	2023-07-16	2022-01-21	3.25	2.88	—	3.2	0.002	0.47	0.0	0.04	9.20	0.00	2.243	7.02	4.57	5.0	95.0	0.0	-3.68	0.85	0.77	2.45	3.2	0.006	0.72	0.0	0.05	14.15	0.00	2.035	11.95	0.42	9.3	90.7	0.0	-2.16	1.68	0.89	0.86	2.69	35134	4476	12	0	38	0	0	logfile

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