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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TAU | 10428 | 2023-08-10 | 2019-10-30 | 3.7 | 2.83 | — | 3.7 | 0.006 | 0.99 | 0.0 | 0.06 | 15.44 | 0.01 | 1.283 | 13.22 | 0.23 | 6.5 | 93.5 | 0.0 | -4.23 | 0.55 | 0.75 | 1.32 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.43 | 0.00 | 2.202 | 7.23 | 0.79 | 6.0 | 94.0 | 0.0 | 0.47 | 0.65 | 0.56 | 0.76 | 1.46 | 8148 | 984 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SPE | 10283 | 2023-08-27 | 2019-09-01 | 3.6 | 3.80 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.04 | 15.30 | 0.01 | 2.277 | 3.97 | 0.10 | 8.4 | 91.6 | 0.0 | -4.99 | 0.88 | 0.84 | 2.15 | 3.6 | 0.005 | 0.68 | 0.0 | 0.04 | 15.89 | 0.00 | 2.042 | 11.95 | 0.77 | 8.0 | 92.0 | 0.0 | -1.82 | 0.68 | 0.89 | 0.85 | 1.50 | 51429 | 2392 | 21 | 1526 | 0 | 0 | 0 | logfile |
✔ | 7B0S | 11970 | 2023-08-16 | 2020-11-21 | 3.6 | 3.73 | — | 3.6 | 0.009 | 0.77 | 0.0 | 0.04 | 16.07 | 0.00 | 2.214 | 7.36 | 0.35 | 6.2 | 93.8 | 0.0 | -0.53 | 0.83 | 0.86 | 2.66 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.85 | 0.00 | 2.225 | 4.20 | 0.22 | 2.5 | 97.5 | 0.0 | 1.27 | 0.36 | 0.82 | 0.85 | 1.80 | 21076 | 2572 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7M74 | 23708 | 2023-08-13 | 2021-03-26 | 3.93 | 4.17 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.11 | 9.61 | 0.01 | 1.330 | 3.92 | 0.00 | 3.0 | 97.0 | 0.0 | -3.25 | 0.91 | 0.78 | 1.54 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 12.47 | 0.00 | 2.151 | 13.02 | 0.27 | 2.7 | 97.3 | 0.0 | -0.21 | 1.56 | 0.92 | 0.83 | 1.87 | 13457 | 1699 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NJL | 12382 | 2023-08-18 | 2021-02-17 | 2.71 | 2.49 | — | 2.2 | 0.003 | 0.51 | 0.0 | 0.04 | 14.71 | 0.00 | 2.057 | 6.48 | 0.00 | 2.4 | 97.6 | 0.0 | 1.54 | 0.85 | 0.86 | 3.77 | 2.2 | 0.004 | 0.54 | 0.0 | 0.04 | 16.14 | 0.00 | 1.731 | 7.10 | 0.65 | 2.7 | 97.2 | 0.0 | 1.49 | 0.33 | 0.86 | 0.88 | 3.74 | 74775 | 4944 | 31 | 0 | 11 | 16 | 37414 | logfile |
✔ | 7Z85 | 14543 | 2023-08-19 | 2022-03-16 | 3.1 | 2.74 | 3.08 | 3.0 | 0.007 | 0.88 | 0.0 | 0.05 | 12.82 | 0.00 | 2.156 | 5.48 | 0.99 | 3.6 | 96.3 | 0.0 | -0.88 | 0.57 | 0.64 | 2.92 | 3.0 | 0.005 | 0.66 | 0.0 | 0.05 | 14.91 | 0.00 | 2.179 | 7.52 | 0.32 | 3.7 | 96.3 | 0.0 | 0.19 | 1.23 | 0.71 | 0.81 | 2.63 | 26834 | 3344 | 29 | 0 | 66 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2023-08-10 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 18.03 | 0.00 | 2.263 | 6.15 | 0.68 | 6.4 | 93.6 | 0.0 | 0.32 | 0.56 | 0.61 | 0.78 | 1.33 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DXi | 30910 | 2023-08-09 | 2021-01-19 | 3.53 | 3.60 | — | 3.6 | 0.006 | 1.30 | 0.0 | 0.06 | 15.06 | 0.01 | 1.468 | 4.71 | 0.30 | 13.9 | 85.5 | 0.6 | -5.04 | 0.73 | 0.81 | 3.68 | 3.6 | 0.004 | 0.79 | 0.0 | 0.04 | 16.58 | 0.01 | 2.187 | 10.75 | 0.89 | 15.4 | 84.6 | 0.0 | -2.54 | 0.49 | 0.73 | 0.81 | 2.79 | 6130 | 742 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7DTW | 30856 | 2023-08-11 | 2021-01-06 | 4.5 | 4.74 | — | 3.6 | 0.008 | 1.01 | 0.0 | 0.06 | 13.74 | 0.01 | 2.267 | 9.20 | 0.00 | 10.3 | 89.7 | 0.0 | -4.26 | 0.71 | 0.78 | — | 3.7 | 0.002 | 0.59 | 0.0 | 0.05 | 12.54 | 0.00 | 2.233 | 7.27 | 0.00 | 8.1 | 91.9 | 0.0 | -1.09 | 0.58 | 0.71 | 0.79 | — | 10250 | 1556 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7WUG | 32830 | 2023-08-15 | 2022-02-08 | 3.3 | 3.43 | — | 3.4 | 0.004 | 0.69 | 0.0 | 0.05 | 13.45 | 0.00 | 2.231 | 3.19 | 0.11 | 4.1 | 95.8 | 0.0 | -0.52 | 0.79 | 0.86 | 2.55 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 15.01 | 0.00 | 2.140 | 5.28 | 0.22 | 3.4 | 96.5 | 0.0 | 1.41 | 0.27 | 0.78 | 0.87 | 1.92 | 17515 | 2239 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X23 | 32956 | 2023-08-11 | 2022-02-25 | 3.2 | 2.34 | 3.00 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 13.02 | 0.00 | 2.232 | 9.24 | 0.00 | 2.9 | 97.1 | 0.0 | 1.28 | 0.53 | 0.64 | 1.83 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 15.22 | 0.00 | 2.221 | 8.84 | 0.09 | 2.9 | 97.1 | 0.0 | 0.95 | 1.00 | 0.57 | 0.74 | 1.70 | 9976 | 1262 | 5 | 0 | 5 | 7 | 0 | logfile |
✔ | 7FCE | 31525 | 2023-08-18 | 2021-07-14 | 3.1 | 3.19 | — | 3.1 | 0.010 | 0.98 | 0.0 | 0.07 | 12.91 | 0.01 | 2.343 | 1.98 | 0.99 | 4.6 | 95.3 | 0.2 | -0.85 | 0.73 | 0.74 | 1.96 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.00 | 0.00 | 2.176 | 4.45 | 0.11 | 3.7 | 96.2 | 0.0 | 0.02 | 1.43 | 0.82 | 0.88 | 3.12 | 25542 | 3125 | 33 | 0 | 78 | 0 | 0 | logfile |
✔ | 7TAN | 25777 | 2023-08-12 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.32 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.004 | 0.51 | 0.0 | 0.03 | 27.86 | 0.00 | 2.221 | 2.61 | 0.78 | 2.0 | 98.0 | 0.0 | 2.33 | 0.33 | 0.83 | 0.87 | 2.17 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 6W2Y | 21534 | 2023-08-11 | 2020-03-08 | 3.2 | 3.42 | — | 3.4 | 0.007 | 0.73 | 0.0 | 0.06 | 14.63 | 0.00 | 2.193 | 10.12 | 0.12 | 8.3 | 91.7 | 0.0 | -3.95 | 0.67 | 0.78 | 2.98 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 15.07 | 0.00 | 2.170 | 8.94 | 0.48 | 3.7 | 96.3 | 0.0 | -0.21 | 0.53 | 0.64 | 0.79 | 2.73 | 9721 | 1327 | 6 | 0 | 14 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2023-08-18 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.04 | 0.00 | 2.092 | 12.45 | 0.00 | 5.3 | 94.6 | 0.1 | -0.61 | 1.62 | 0.84 | 0.69 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 7Yi1 | 33848 | 2023-08-13 | 2022-07-14 | 2.8 | 2.41 | 2.78 | 2.6 | 0.003 | 0.57 | 0.0 | 0.03 | 27.17 | 0.00 | 2.155 | 7.30 | 0.37 | 1.9 | 98.1 | 0.0 | 0.12 | 0.81 | 0.84 | 2.94 | 2.6 | 0.003 | 0.58 | 0.0 | 0.04 | 27.94 | 0.00 | 2.175 | 7.77 | 1.61 | 2.1 | 97.9 | 0.0 | 1.47 | 0.22 | 0.81 | 0.86 | 2.70 | 13926 | 967 | 12 | 302 | 0 | 0 | 0 | logfile |
✔ | 7K11 | 22620 | 2023-08-11 | 2020-09-06 | 3.21 | 3.34 | — | 3.3 | 0.005 | 0.92 | 0.0 | 0.05 | 15.33 | 0.01 | 2.271 | 4.65 | 0.46 | 9.6 | 90.3 | 0.1 | -5.00 | 0.69 | 0.76 | 1.74 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 16.63 | 0.00 | 2.259 | 7.50 | 0.37 | 9.4 | 90.6 | 0.0 | -0.83 | 1.23 | 0.70 | 0.78 | 1.30 | 10011 | 1254 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NJM | 12387 | 2023-08-18 | 2021-02-17 | 2.84 | 2.63 | — | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 14.84 | 0.00 | 1.935 | 6.68 | 0.00 | 2.7 | 97.3 | 0.0 | 1.41 | 0.85 | 0.86 | 3.49 | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 16.33 | 0.00 | 1.756 | 6.60 | 0.49 | 2.3 | 97.6 | 0.0 | 1.55 | 0.90 | 0.86 | 0.88 | 3.33 | 74611 | 4932 | 31 | 0 | 11 | 16 | 37328 | logfile |
✔ | 7W4A | 32299 | 2023-08-12 | 2021-11-26 | 2.76 | 2.16 | 2.69 | 2.2 | 0.006 | 0.71 | 0.0 | 0.04 | 13.12 | 0.00 | 2.048 | 7.08 | 0.09 | 2.3 | 97.7 | 0.0 | 1.29 | 0.63 | 0.77 | 3.24 | 2.2 | 0.002 | 0.54 | 0.0 | 0.04 | 15.88 | 0.00 | 2.033 | 6.62 | 1.80 | 2.4 | 97.6 | 0.0 | 1.44 | 0.43 | 0.63 | 0.79 | 2.98 | 9855 | 1245 | 5 | 0 | 7 | 12 | 0 | logfile |
✔ | 7DTU | 30854 | 2023-08-12 | 2021-01-06 | 4.4 | 4.54 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.06 | 14.57 | 0.01 | 2.277 | 6.85 | 0.00 | 9.4 | 90.6 | 0.0 | -3.95 | 0.68 | 0.79 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.14 | 0.00 | 2.169 | 11.99 | 0.00 | 6.5 | 93.5 | 0.0 | -0.70 | 1.10 | 0.68 | 0.80 | — | 10846 | 1558 | 8 | 0 | 14 | 0 | 0 | logfile |