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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6LBH | 0869 | 2023-02-19 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2023-02-22 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGJ | 11208 | 2023-02-20 | 2020-06-18 | 3.4 | 3.39 | 3.34 | 3.5 | 0.005 | 0.61 | 0.0 | 0.04 | 12.36 | 0.00 | 2.192 | 9.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.35 | 0.69 | 0.79 | 3.10 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.228 | 6.59 | 0.18 | 5.7 | 94.3 | 0.0 | -0.56 | 0.42 | 0.71 | 0.85 | 2.51 | 11555 | 1540 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LD3 | 23280 | 2023-02-18 | 2021-01-12 | 3.2 | 3.49 | 3.04 | 3.5 | 0.006 | 1.02 | 0.0 | 0.06 | 12.70 | 0.01 | 2.277 | 3.63 | 0.13 | 3.3 | 96.7 | 0.0 | -1.50 | 0.59 | 0.82 | 3.41 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.47 | 0.00 | 2.172 | 8.54 | 0.00 | 2.2 | 97.8 | 0.0 | 0.57 | 1.26 | 0.68 | 0.87 | 2.78 | 7016 | 888 | 5 | 0 | 2 | 1 | 0 | logfile |
✔ | 7YP9 | 33996 | 2023-02-25 | 2022-08-03 | 3.58 | 3.68 | 3.59 | 3.7 | 0.003 | 0.66 | 0.0 | 0.05 | 14.57 | 0.01 | 2.140 | 5.57 | 0.08 | 3.4 | 96.6 | 0.0 | -4.82 | 0.68 | 0.66 | 0.63 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 17.31 | 0.00 | 2.073 | 18.78 | 0.32 | 3.8 | 96.2 | 0.0 | -0.86 | 1.29 | 0.73 | 0.76 | 1.05 | 24547 | 3013 | 10 | 61 | 3 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-02-26 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NP0 | 0469 | 2023-02-22 | 2019-01-17 | 2.92 | 3.16 | 3.01 | 3.1 | 0.011 | 1.23 | 0.0 | 0.08 | 10.32 | 0.01 | 2.270 | 3.63 | 0.55 | 5.2 | 94.8 | 0.0 | -3.90 | 0.69 | 0.72 | 2.76 | 3.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.52 | 0.00 | 2.216 | 5.67 | 3.56 | 3.0 | 97.0 | 0.0 | 0.24 | 0.84 | 0.79 | 0.85 | 2.63 | 16891 | 1975 | 20 | 0 | 41 | 0 | 0 | logfile |
✔ | 6V6B | 21067 | 2023-02-19 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.33 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 16.91 | 0.00 | 2.139 | 6.54 | 0.20 | 3.4 | 96.6 | 0.1 | -0.41 | 0.59 | 0.53 | 0.83 | 0.72 | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BNQ | 12232 | 2023-02-20 | 2021-01-22 | 4.1 | 4.35 | 4.09 | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 14.89 | 0.01 | 2.293 | 4.99 | 0.32 | 5.4 | 94.6 | 0.0 | -3.83 | 0.78 | 0.86 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.096 | 9.90 | 0.00 | 5.8 | 94.2 | 0.0 | -1.47 | 1.21 | 0.78 | 0.85 | — | 11617 | 1488 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLY | 20380 | 2023-02-21 | 2019-07-01 | 2.9 | 3.56 | — | 3.4 | 0.007 | 1.00 | 0.0 | 0.06 | 10.18 | 0.01 | 2.330 | 5.09 | 0.00 | 5.1 | 94.9 | 0.0 | -5.21 | 0.51 | 0.79 | 3.82 | 3.4 | 0.004 | 0.72 | 0.0 | 0.05 | 15.97 | 0.00 | 2.248 | 9.86 | 2.81 | 4.5 | 95.3 | 0.2 | -1.83 | 1.35 | 0.52 | 0.80 | 3.10 | 14165 | 1730 | 14 | 0 | 20 | 0 | 0 | logfile |
✔ | 6PLZ | 20381 | 2023-02-21 | 2019-07-01 | 3.0 | 3.68 | — | 3.5 | 0.006 | 0.94 | 0.0 | 0.06 | 9.68 | 0.01 | 2.338 | 4.40 | 0.00 | 5.3 | 94.7 | 0.0 | -5.25 | 0.60 | 0.85 | 4.29 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 15.71 | 0.00 | 2.123 | 9.40 | 2.65 | 3.0 | 97.0 | 0.0 | -0.63 | 1.07 | 0.54 | 0.83 | 3.25 | 14210 | 1725 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6PA7 | 20281 | 2023-02-23 | 2019-06-11 | 2.94 | 3.31 | — | 3.1 | 0.005 | 0.80 | 0.0 | 0.05 | 23.57 | 0.01 | 2.304 | 3.72 | 0.00 | 3.1 | 96.9 | 0.0 | -2.99 | 0.80 | 0.77 | 2.57 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 25.89 | 0.00 | 2.170 | 12.52 | 2.87 | 3.6 | 96.4 | 0.0 | 0.76 | 0.85 | 0.82 | 0.83 | 2.55 | 21019 | 1770 | 19 | 332 | 3 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2023-02-23 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 4.99 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.95 | 0.00 | 2.155 | 10.44 | 0.55 | 5.9 | 94.1 | 0.0 | -1.05 | 1.71 | 0.64 | 0.85 | 2.00 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NT6 | 12584 | 2023-02-25 | 2021-03-09 | 4.3 | 4.34 | 3.99 | 3.3 | 0.012 | 2.07 | 0.0 | 0.15 | 8.75 | 0.01 | 2.119 | 1.13 | 0.00 | 4.0 | 95.6 | 0.3 | -2.44 | 0.72 | 0.76 | — | 3.3 | 0.002 | 0.62 | 0.0 | 0.05 | 8.09 | 0.00 | 2.161 | 2.67 | 0.00 | 4.4 | 95.6 | 0.0 | 1.97 | 0.64 | 0.71 | 0.71 | — | 24128 | 5582 | 17 | 90 | 0 | 0 | 0 | logfile |
✔ | 7TVE | 26140 | 2023-02-21 | 2022-02-04 | 3.8 | 4.04 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 18.77 | 0.00 | 2.213 | 17.42 | 3.26 | 13.4 | 86.3 | 0.3 | -4.24 | 0.73 | 0.69 | 1.65 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 19.76 | 0.00 | 2.166 | 13.82 | 0.19 | 8.9 | 91.1 | 0.1 | -1.61 | 0.76 | 0.75 | 0.72 | 1.08 | 15456 | 1793 | 8 | 54 | 1 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-02-22 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.08 | 0.0 | 0.05 | 12.10 | 0.00 | 2.000 | 18.84 | 0.00 | 16.9 | 83.0 | 0.1 | -3.25 | 1.51 | 0.67 | 0.75 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LT4 | 0967 | 2023-02-27 | 2020-01-21 | 4.5 | 4.86 | — | 4.8 | 0.006 | 0.92 | 0.0 | 0.05 | 15.21 | 0.00 | 1.863 | 25.41 | 1.54 | 7.7 | 92.3 | 0.0 | -0.98 | 0.75 | 0.70 | — | 4.8 | 0.003 | 0.73 | 0.0 | 0.04 | 14.63 | 0.00 | 1.959 | 15.31 | 0.00 | 5.0 | 95.0 | 0.0 | -0.70 | 1.08 | 0.76 | 0.71 | — | 68432 | 8722 | 28 | 0 | 56 | 0 | 0 | logfile |
✔ | 6YKM | 10828 | 2023-02-19 | 2020-04-06 | 3.1 | 3.19 | 2.97 | 3.2 | 0.009 | 1.07 | 0.0 | 0.06 | 11.10 | 0.01 | 2.256 | 4.12 | 0.00 | 3.0 | 97.0 | 0.0 | -4.68 | 0.68 | 0.86 | 4.14 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.163 | 9.05 | 0.00 | 2.7 | 97.3 | 0.0 | 0.97 | 1.08 | 0.69 | 0.88 | 2.54 | 10434 | 1357 | 10 | 0 | 0 | 8 | 0 | logfile |
✘ | 6DJN | 7937 | 2023-02-20 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.011 | 0.95 | 0.0 | 0.06 | 10.67 | 0.01 | 2.106 | 5.53 | 0.00 | 5.4 | 94.6 | 0.0 | -4.61 | 0.69 | 0.86 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11768 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7EoU | 31231 | 2023-02-25 | 2021-04-22 | 4.3 | 4.50 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.92 | 0.00 | 2.243 | 9.12 | 1.92 | 3.9 | 96.0 | 0.1 | 0.78 | 0.86 | 0.73 | — | 4.2 | 0.002 | 0.60 | 0.0 | 0.04 | 11.17 | 0.00 | 2.074 | 13.71 | 0.00 | 5.3 | 94.6 | 0.1 | -0.18 | 1.64 | 0.89 | 0.79 | — | 24593 | 3084 | 8 | 0 | 19 | 0 | 0 | logfile |