Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UKS	20811	2023-08-25	2019-10-05	3.2	2.36	—	3.2	0.009	0.88	0.0	0.05	14.20	0.01	2.007	2.74	0.32	8.4	91.6	0.0	-3.37	0.76	0.80	3.01	3.2	0.005	0.59	0.0	0.04	16.31	0.00	1.891	7.23	0.14	6.0	94.0	0.0	-0.76	1.08	0.77	0.84	3.04	40838	2534	14	0	14	0	20160	logfile
✔	6VQT	21356	2023-08-11	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.74	0.0	0.04	16.60	0.00	1.052	9.77	0.32	3.0	97.0	0.0	2.30	1.06	0.77	0.84	1.48	9144	1168	4	0	6	0	0	logfile
✔	7N73	24218	2023-08-10	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.87	0.0	0.04	14.40	0.00	2.044	6.12	1.09	2.1	97.9	0.0	2.37	0.34	0.69	0.84	2.37	7866	1036	1	0	6	3	0	logfile
✔	7TVi	26141	2023-08-13	2022-02-04	3.2	3.59	2.45	3.5	0.005	0.82	0.0	0.05	14.00	0.01	2.228	5.20	0.07	2.6	97.4	0.0	-0.83	0.67	0.67	0.72	3.5	0.003	0.71	0.0	0.04	16.32	0.00	2.191	8.80	0.46	2.2	97.8	0.0	-0.19	1.50	0.74	0.79	1.98	13746	1687	10	0	6	0	0	logfile
✔	6A6B	6988	2023-08-09	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.006	0.78	0.0	0.05	13.53	0.00	2.139	17.09	0.37	10.4	89.6	0.0	-2.88	2.17	0.52	0.71	2.87	5256	756	12	0	0	0	0	logfile
✔	8ET6	28586	2023-08-10	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.62	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.004	0.59	0.0	0.03	15.13	0.00	1.948	8.58	0.00	5.5	94.5	0.0	1.04	1.37	0.51	0.72	1.53	8092	532	2	0	2	0	4007	logfile
✔	7VYS	32214	2023-08-25	2021-11-15	2.5	2.59	—	2.6	0.008	0.85	0.0	0.04	18.82	0.01	1.328	6.47	0.97	3.5	96.4	0.1	1.73	0.76	0.91	4.14	2.6	0.003	0.55	0.0	0.04	17.80	0.00	2.106	6.03	1.55	3.3	96.6	0.1	1.84	0.59	0.75	0.91	4.06	40113	4727	64	0	27	425	0	logfile
✔	7WXW	32882	2023-08-10	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile
✔	6V4N	21042	2023-08-18	2019-11-28	2.5	2.75	—	2.7	0.009	0.79	0.0	0.07	13.84	0.01	1.991	4.86	1.03	6.4	93.5	0.0	-3.16	0.76	0.85	3.84	2.7	0.003	0.64	0.0	0.04	15.67	0.00	2.168	4.84	1.43	3.5	96.5	0.0	-0.65	1.97	0.76	0.87	3.59	25866	3286	40	0	36	182	0	logfile
✔	7RX3	24723	2023-08-11	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	18.79	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.003	0.56	0.0	0.04	16.75	0.00	2.215	4.92	0.30	7.1	92.9	0.0	0.82	0.54	0.74	0.86	2.78	10130	1182	4	0	16	0	0	logfile
✔	7WQZ	32716	2023-08-09	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.18	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.0	0.003	0.81	0.0	0.05	13.97	0.00	2.161	18.77	0.95	12.0	87.8	0.2	-3.10	0.73	0.83	0.78	1.75	3974	496	4	0	9	0	0	logfile
✔	7VUG	32127	2023-08-11	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	7WR7	32717	2023-08-09	2022-01-26	3.1	3.81	—	3.8	0.005	0.60	0.0	0.04	9.68	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.004	0.71	0.0	0.05	14.52	0.00	2.151	14.36	0.47	12.8	87.2	0.0	-2.78	1.24	0.69	0.72	2.58	3995	496	4	0	10	0	0	logfile
✔	7UWN	26837	2023-08-11	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.59	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.05	16.70	0.00	2.117	15.57	0.51	6.0	94.0	0.0	-1.14	0.33	0.66	0.64	0.94	10602	1325	12	0	11	0	0	logfile
✔	8JoL	36459	2023-08-10	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	17.24	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.83	0.0	0.04	16.02	0.00	1.975	9.53	1.43	3.5	96.5	0.0	0.45	2.18	0.62	0.88	1.90	8513	1087	5	0	4	0	0	logfile
✔	7Mi4	23839	2023-08-14	2021-04-16	3.2	3.56	—	3.5	0.009	0.98	0.0	0.05	18.89	0.01	1.590	13.93	5.83	8.4	91.5	0.1	-1.33	0.79	0.83	2.21	3.5	0.004	0.63	0.0	0.04	18.54	0.00	2.087	9.55	0.06	6.3	93.6	0.1	-0.16	1.35	0.80	0.85	2.29	17162	1978	15	70	10	0	0	logfile
✔	7oE3	12860	2023-08-12	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.003	0.61	0.0	0.04	16.07	0.00	2.102	7.34	0.22	8.0	92.0	0.0	0.32	0.41	0.93	0.90	1.77	11904	1478	1	0	2	0	0	logfile
✔	7UM6	26598	2023-08-10	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	7SP8	25368	2023-08-10	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.24	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.003	0.59	0.0	0.04	16.97	0.00	1.936	8.01	1.90	1.2	98.8	0.0	1.82	0.62	0.75	0.88	3.41	6090	742	4	0	5	0	0	logfile
✔	6oKT	20104	2023-08-19	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.002	0.62	0.0	0.04	13.62	0.00	2.123	10.59	0.00	7.9	92.1	0.0	-2.29	0.58	0.73	0.80	—	27048	3451	7	0	0	0	0	logfile

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