Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6LBH	0869	2023-02-19	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9219	1236	6	0	0	0	0	logfile
✔	6iG9	9664	2023-02-22	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	6ZGJ	11208	2023-02-20	2020-06-18	3.4	3.39	3.34	3.5	0.005	0.61	0.0	0.04	12.36	0.00	2.192	9.66	0.00	6.3	93.7	0.0	-1.35	0.69	0.79	3.10	3.5	0.003	0.58	0.0	0.04	14.28	0.00	2.228	6.59	0.18	5.7	94.3	0.0	-0.56	0.42	0.71	0.85	2.51	11555	1540	5	0	0	0	0	logfile
✔	7LD3	23280	2023-02-18	2021-01-12	3.2	3.49	3.04	3.5	0.006	1.02	0.0	0.06	12.70	0.01	2.277	3.63	0.13	3.3	96.7	0.0	-1.50	0.59	0.82	3.41	3.4	0.003	0.56	0.0	0.04	14.47	0.00	2.172	8.54	0.00	2.2	97.8	0.0	0.57	1.26	0.68	0.87	2.78	7016	888	5	0	2	1	0	logfile
✔	7YP9	33996	2023-02-25	2022-08-03	3.58	3.68	3.59	3.7	0.003	0.66	0.0	0.05	14.57	0.01	2.140	5.57	0.08	3.4	96.6	0.0	-4.82	0.68	0.66	0.63	3.6	0.003	0.69	0.0	0.04	17.31	0.00	2.073	18.78	0.32	3.8	96.2	0.0	-0.86	1.29	0.73	0.76	1.05	24547	3013	10	61	3	0	0	logfile
✘	7D44	30569	2023-02-26	2020-09-22	4.0	4.14	—	4.0	0.006	0.86	0.0	0.05	14.78	0.00	2.049	20.50	0.28	16.3	83.6	0.1	-5.25	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28391	3825	12	0	0	0	0	logfile
✔	6NP0	0469	2023-02-22	2019-01-17	2.92	3.16	3.01	3.1	0.011	1.23	0.0	0.08	10.32	0.01	2.270	3.63	0.55	5.2	94.8	0.0	-3.90	0.69	0.72	2.76	3.1	0.003	0.64	0.0	0.05	14.52	0.00	2.216	5.67	3.56	3.0	97.0	0.0	0.24	0.84	0.79	0.85	2.63	16891	1975	20	0	41	0	0	logfile
✔	6V6B	21067	2023-02-19	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	3.9	0.003	0.61	0.0	0.04	16.91	0.00	2.139	6.54	0.20	3.4	96.6	0.1	-0.41	0.59	0.53	0.83	0.72	9115	1111	2	0	0	0	0	logfile
✔	7BNQ	12232	2023-02-20	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.62	0.0	0.04	14.17	0.00	2.096	9.90	0.00	5.8	94.2	0.0	-1.47	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile
✔	6PLY	20380	2023-02-21	2019-07-01	2.9	3.56	—	3.4	0.007	1.00	0.0	0.06	10.18	0.01	2.330	5.09	0.00	5.1	94.9	0.0	-5.21	0.51	0.79	3.82	3.4	0.004	0.72	0.0	0.05	15.97	0.00	2.248	9.86	2.81	4.5	95.3	0.2	-1.83	1.35	0.52	0.80	3.10	14165	1730	14	0	20	0	0	logfile
✔	6PLZ	20381	2023-02-21	2019-07-01	3.0	3.68	—	3.5	0.006	0.94	0.0	0.06	9.68	0.01	2.338	4.40	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.003	0.64	0.0	0.05	15.71	0.00	2.123	9.40	2.65	3.0	97.0	0.0	-0.63	1.07	0.54	0.83	3.25	14210	1725	15	0	20	0	0	logfile
✔	6PA7	20281	2023-02-23	2019-06-11	2.94	3.31	—	3.1	0.005	0.80	0.0	0.05	23.57	0.01	2.304	3.72	0.00	3.1	96.9	0.0	-2.99	0.80	0.77	2.57	3.1	0.003	0.65	0.0	0.04	25.89	0.00	2.170	12.52	2.87	3.6	96.4	0.0	0.76	0.85	0.82	0.83	2.55	21019	1770	19	332	3	0	0	logfile
✔	6J0F	9763	2023-02-23	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	4.99	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.003	0.74	0.0	0.04	16.95	0.00	2.155	10.44	0.55	5.9	94.1	0.0	-1.05	1.71	0.64	0.85	2.00	19314	2472	12	0	0	0	0	logfile
✔	7NT6	12584	2023-02-25	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	7TVE	26140	2023-02-21	2022-02-04	3.8	4.04	—	4.0	0.005	0.86	0.0	0.05	18.77	0.00	2.213	17.42	3.26	13.4	86.3	0.3	-4.24	0.73	0.69	1.65	4.0	0.003	0.70	0.0	0.04	19.76	0.00	2.166	13.82	0.19	8.9	91.1	0.1	-1.61	0.76	0.75	0.72	1.08	15456	1793	8	54	1	0	0	logfile
✔	5WRG	6679	2023-02-22	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.08	0.0	0.05	12.10	0.00	2.000	18.84	0.00	16.9	83.0	0.1	-3.25	1.51	0.67	0.75	—	16317	2208	3	0	0	0	0	logfile
✔	6LT4	0967	2023-02-27	2020-01-21	4.5	4.86	—	4.8	0.006	0.92	0.0	0.05	15.21	0.00	1.863	25.41	1.54	7.7	92.3	0.0	-0.98	0.75	0.70	—	4.8	0.003	0.73	0.0	0.04	14.63	0.00	1.959	15.31	0.00	5.0	95.0	0.0	-0.70	1.08	0.76	0.71	—	68432	8722	28	0	56	0	0	logfile
✔	6YKM	10828	2023-02-19	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.61	0.0	0.04	14.94	0.00	2.163	9.05	0.00	2.7	97.3	0.0	0.97	1.08	0.69	0.88	2.54	10434	1357	10	0	0	8	0	logfile
✘	6DJN	7937	2023-02-20	2018-05-25	3.1	3.26	—	3.2	0.011	0.95	0.0	0.06	10.67	0.01	2.106	5.53	0.00	5.4	94.6	0.0	-4.61	0.69	0.86	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11768	1488	8	0	12	0	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile

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