Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NSJ	0498	2023-04-21	2019-01-24	2.7	3.69	2.67	3.6	0.008	1.12	0.0	0.06	13.77	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.003	0.59	0.0	0.04	14.04	0.00	2.234	5.27	1.09	4.0	96.0	0.0	2.26	0.53	0.58	0.75	2.91	9096	1092	12	0	18	0	0	logfile
✔	7ABF	11694	2023-04-27	2020-09-07	3.9	4.03	—	3.9	0.004	0.69	0.0	0.13	11.14	0.00	1.747	4.05	0.19	11.8	88.1	0.1	-3.73	0.73	0.72	2.68	4.0	0.003	0.69	0.0	0.04	13.37	0.00	1.948	8.07	0.48	10.4	89.6	0.0	-1.23	0.69	0.76	0.77	2.38	25904	3732	17	152	3	0	0	logfile
✔	6KXS	0782	2023-04-26	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.91	0.01	2.157	9.00	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.003	0.68	0.0	0.05	16.60	0.00	2.148	10.57	0.16	8.5	91.5	0.0	-1.97	0.59	0.71	0.75	2.11	22499	2869	23	0	12	0	0	logfile
✔	7W1Z	32259	2023-04-25	2021-11-21	2.6	2.69	—	2.7	0.008	0.81	0.0	0.04	18.13	0.01	2.204	6.71	1.37	3.4	96.5	0.1	0.94	0.80	0.89	3.75	2.7	0.002	0.52	0.0	0.04	17.28	0.00	2.111	6.74	1.74	3.3	96.7	0.1	1.23	0.23	0.79	0.89	3.55	68127	8270	69	0	45	0	0	logfile
✔	6X6A	22074	2023-04-25	2020-05-27	3.6	3.58	—	3.4	0.010	1.29	0.0	0.08	14.43	0.01	2.206	13.75	0.45	7.5	92.4	0.1	-2.80	0.86	0.83	3.00	3.4	0.003	0.67	0.0	0.04	15.74	0.00	2.084	15.40	0.27	6.3	93.7	0.0	-1.07	0.57	0.86	0.82	2.41	20240	2524	8	0	0	0	0	logfile
✔	6J2Q	9771	2023-04-19	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	6QSU	4629	2023-04-28	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.49	0.00	1.940	5.87	0.67	3.1	96.9	0.0	0.36	1.15	0.72	0.86	4.21	75758	9684	60	0	36	1178	0	logfile
✔	7WSV	32768	2023-04-24	2022-02-01	4.5	4.52	4.26	4.5	0.003	0.74	0.0	0.04	13.53	0.00	2.263	10.81	0.00	4.5	95.5	0.0	0.72	0.52	0.75	—	4.5	0.003	0.74	0.0	0.04	13.28	0.01	2.088	11.08	0.00	4.9	95.1	0.0	1.40	1.35	0.52	0.76	—	16443	2051	7	0	0	0	0	logfile
✔	6YS5	10892	2023-04-24	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	15.84	0.01	1.880	5.29	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.005	0.61	0.0	0.04	15.96	0.00	1.876	5.39	5.11	7.3	92.7	0.0	-0.24	0.31	0.80	0.90	2.97	16864	852	13	477	24	0	0	logfile
✔	6NSK	0499	2023-04-21	2019-01-24	2.7	2.82	2.55	3.1	0.009	1.11	0.0	0.06	14.42	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.003	0.58	0.0	0.04	14.68	0.00	2.265	5.59	1.74	3.7	96.3	0.0	2.52	0.42	0.65	0.82	3.62	9096	1092	12	0	18	0	0	logfile
✔	7KSM	23020	2023-04-27	2020-11-23	3.2	2.90	3.21	3.1	0.007	0.79	0.0	0.05	14.48	0.01	1.934	7.88	0.08	4.4	95.6	0.0	-2.42	0.76	0.86	3.00	3.1	0.002	0.55	0.0	0.04	16.01	0.00	2.005	7.70	0.30	3.7	96.3	0.0	0.21	1.22	0.77	0.87	2.33	24547	3137	13	0	22	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7W4N	32309	2023-04-23	2021-11-28	3.0	3.03	—	3.0	0.010	0.83	0.0	0.05	17.73	0.01	1.982	8.71	1.28	3.9	96.1	0.0	0.75	0.78	0.88	3.05	3.0	0.004	0.61	0.0	0.04	17.51	0.00	2.133	7.54	2.57	4.5	95.5	0.0	0.76	1.13	0.78	0.88	2.97	66477	8140	65	0	34	0	0	logfile
✔	7WUS	32840	2023-04-20	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.80	0.0	0.05	17.38	0.00	2.113	12.74	0.50	8.3	91.6	0.1	-1.93	1.46	0.70	0.77	1.35	5450	682	2	0	0	0	0	logfile
✔	7KSL	23019	2023-04-24	2020-11-23	3.5	2.75	3.35	3.3	0.007	0.78	0.0	0.05	14.07	0.01	2.133	8.85	0.12	8.7	91.3	0.0	-3.52	0.73	0.81	2.24	3.3	0.003	0.61	0.0	0.04	15.45	0.00	2.148	7.10	0.29	4.7	95.3	0.0	0.14	1.22	0.73	0.81	2.00	18306	2551	10	0	5	0	0	logfile
✔	7TDJ	25831	2023-04-23	2021-12-31	3.7	3.93	3.79	3.8	0.005	0.91	0.0	0.04	15.74	0.01	2.223	5.62	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.34	152.0	0.16	20.01	0.02	1.738	94.23	2.94	37.0	60.2	2.7	-7.31	1.34	0.89	0.86	1.52	117112	12932	12	0	3616	8	0	logfile
✔	7W0Y	32249	2023-04-25	2021-11-18	3.4	3.42	—	3.4	0.008	0.81	0.0	0.04	17.98	0.01	2.148	11.79	0.22	3.4	96.5	0.1	1.17	0.78	0.85	2.73	3.4	0.002	0.54	0.0	0.04	17.04	0.00	2.142	8.54	0.24	3.3	96.6	0.0	1.18	0.35	0.78	0.86	2.57	68093	8269	68	0	44	0	0	logfile
✔	7Q2X	13783	2023-04-24	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	8C00	16347	2023-04-22	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.42	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	6UGH	20764	2023-04-22	2019-09-26	3.4	3.33	—	3.4	0.009	0.90	0.0	0.05	13.45	0.01	2.024	3.43	0.13	3.3	96.4	0.3	-2.50	0.53	0.74	2.98	3.4	0.004	0.64	0.0	0.04	15.63	0.00	1.979	10.59	0.66	4.9	95.0	0.1	-1.16	1.10	0.54	0.77	2.48	13690	895	2	0	0	0	6716	logfile

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