Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEQ	20034	2023-02-23	2019-03-27	4.3	4.55	—	4.3	0.009	1.05	0.0	0.06	22.94	0.01	1.742	8.94	0.62	8.7	91.2	0.1	-4.02	0.88	0.82	—	4.3	0.003	0.65	0.0	0.04	21.80	0.00	1.986	13.74	0.00	5.9	94.1	0.1	-1.25	1.23	0.88	0.81	—	19134	1910	10	206	4	0	0	logfile
✔	6TG9	10495	2023-02-25	2019-11-15	3.24	3.34	—	3.3	0.016	1.33	0.0	0.06	14.65	0.00	1.847	11.53	0.62	7.8	92.0	0.2	-4.02	0.80	0.78	3.11	3.3	0.004	0.69	0.0	0.04	16.26	0.00	1.975	10.47	0.23	5.3	94.5	0.1	-1.22	0.68	0.83	0.84	2.89	25412	3318	14	0	26	0	0	logfile
✔	7MYN	24081	2023-02-19	2021-05-21	2.79	3.01	2.81	3.2	0.003	0.71	0.0	0.04	14.11	0.00	2.280	7.01	0.26	2.5	97.5	0.0	-0.41	0.65	0.79	2.43	3.1	0.005	0.78	0.0	0.05	17.60	0.00	2.122	15.90	1.38	3.2	96.8	0.0	0.23	1.17	0.64	0.81	2.59	10426	1253	3	0	0	8	0	logfile
✘	7YET	33777	2023-02-20	2022-07-06	3.3	3.55	—	3.5	0.004	0.61	0.0	0.04	14.41	0.01	2.204	7.29	0.23	5.9	93.7	0.4	1.31	0.70	0.81	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11862	1493	6	0	1	0	0	logfile
✔	6VMD	21240	2023-02-26	2020-01-27	4.53	4.68	—	4.5	0.008	1.16	0.0	0.06	16.43	0.01	2.192	12.90	0.78	10.1	89.7	0.1	-3.98	0.92	0.83	—	4.5	0.003	0.70	0.0	0.04	14.96	0.00	2.015	17.21	0.03	7.5	92.4	0.1	-1.14	0.63	0.92	0.82	—	27501	3576	14	0	5	0	0	logfile
✘	7YPA	33997	2023-02-25	2022-08-03	3.05	3.16	3.05	3.1	0.003	0.59	0.0	0.04	14.85	0.01	2.191	3.02	0.08	3.1	96.9	0.0	-3.59	0.76	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26022	3129	10	86	3	0	0	logfile
✔	6oFE	20043	2023-02-20	2019-03-29	3.61	3.70	—	3.6	0.006	0.63	0.0	0.04	10.07	0.01	2.325	1.57	0.00	5.3	94.7	0.0	-6.24	0.64	0.85	2.72	3.6	0.003	0.56	0.0	0.03	16.25	0.00	2.166	6.08	0.46	3.9	96.1	0.0	3.89	0.61	0.65	0.86	1.19	12220	1560	20	0	0	0	0	logfile
✔	7F8W	31494	2023-02-18	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.003	0.73	0.0	0.04	16.01	0.00	2.035	18.99	0.65	5.4	94.6	0.0	-0.80	1.22	0.58	0.65	0.61	8486	1087	6	0	0	0	0	logfile
✔	7NT9	12585	2023-02-26	2021-03-09	3.36	3.62	3.55	3.5	0.003	0.58	0.0	0.05	13.42	0.00	2.229	6.32	0.00	3.8	96.2	0.0	-0.98	0.78	0.81	2.31	3.5	0.004	0.59	0.0	0.05	14.57	0.00	2.198	6.70	0.04	4.8	95.2	0.0	-0.91	0.36	0.80	0.84	2.34	26952	3261	39	0	87	132	0	logfile
✔	7U6E	26364	2023-02-18	2022-03-03	3.0	3.18	2.99	3.1	0.008	0.90	0.0	0.06	14.06	0.01	2.171	5.91	1.82	4.6	95.3	0.1	-2.19	0.79	0.74	2.42	3.1	0.004	0.77	0.0	0.05	16.46	0.00	2.167	14.99	1.82	4.8	95.2	0.0	-1.61	1.66	0.81	0.77	1.91	8004	974	9	0	10	0	0	logfile
✔	8EFE	28081	2023-02-18	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.003	0.57	0.0	0.04	16.07	0.00	1.911	12.38	0.52	4.3	95.7	0.0	0.87	0.44	0.93	0.84	1.02	7135	886	3	0	2	0	0	logfile
✔	7SWo	25477	2023-02-17	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.003	0.72	0.0	0.05	13.81	0.01	2.118	18.05	0.00	6.0	94.0	0.0	-1.25	0.53	0.64	0.74	—	4784	627	3	0	0	0	0	logfile
✔	7UY5	26863	2023-02-26	2022-05-06	3.5	3.20	3.49	3.3	0.002	0.46	0.0	0.04	16.22	0.00	2.182	6.99	0.04	2.8	97.2	0.0	0.64	0.76	0.72	1.86	3.3	0.003	0.53	0.0	0.04	17.50	0.00	2.172	9.06	0.16	3.7	96.3	0.0	0.48	0.40	0.78	0.75	1.77	25772	2690	13	170	2	0	0	logfile
✔	7Q66	13853	2023-02-17	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	7C0M	30267	2023-02-27	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.32	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.8	0.005	0.64	0.0	0.04	27.55	0.00	1.976	14.65	0.10	3.7	96.3	0.0	1.75	1.25	0.86	0.76	0.89	29816	2234	24	580	2	0	0	logfile
✔	7M99	23720	2023-02-22	2021-03-30	3.2	2.95	3.12	3.2	0.014	1.53	0.0	0.10	16.60	0.01	1.823	7.28	0.45	1.8	98.2	0.0	-0.49	0.52	0.69	1.97	3.2	0.006	0.68	0.0	0.04	19.31	0.01	1.836	6.97	0.33	3.9	96.1	0.0	0.53	2.05	0.60	0.83	2.41	17613	2056	17	42	14	0	0	logfile
✔	6V1i	21012	2023-02-19	2019-11-20	3.8	4.10	3.68	3.8	0.007	0.90	0.0	0.04	9.43	0.01	2.433	1.82	0.00	1.5	98.5	0.0	-3.88	0.93	0.89	1.99	3.8	0.002	0.65	0.0	0.04	14.31	0.00	2.170	7.01	0.00	1.5	98.5	0.0	4.93	0.83	0.93	0.89	1.26	9711	1233	9	0	0	0	0	logfile
✔	7ZL4	14777	2023-02-18	2022-04-13	3.45	3.63	3.43	3.5	0.007	1.39	0.0	0.09	16.42	0.00	2.498	3.15	0.00	1.8	98.2	0.0	-4.06	0.67	0.70	0.89	3.5	0.003	0.59	0.0	0.05	15.72	0.00	2.019	12.58	0.55	5.0	95.0	0.0	-2.15	1.02	0.72	0.77	2.06	6678	465	4	0	0	0	3291	logfile
✔	6H61	0143	2023-02-19	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.003	0.59	0.0	0.04	11.88	0.00	2.039	25.21	0.00	8.0	92.0	0.0	0.45	1.84	0.63	0.78	—	9912	660	4	30	1	0	4057	logfile

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