Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N73	24218	2023-07-04	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.87	0.0	0.04	14.40	0.00	2.044	6.12	1.09	2.1	97.9	0.0	2.37	0.34	0.69	0.84	2.37	7866	1036	1	0	6	3	0	logfile
✔	7S8N	24898	2023-07-04	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	6K72	9841	2023-07-15	2019-06-05	4.6	4.68	—	4.6	0.006	1.30	0.0	0.07	12.85	0.01	2.168	10.56	1.37	14.0	85.9	0.1	-5.39	0.74	0.72	—	4.6	0.004	0.88	0.0	0.05	13.31	0.01	2.123	22.61	0.00	13.5	86.5	0.0	-3.49	0.75	0.75	0.73	—	32731	4264	14	0	0	0	0	logfile
✔	7VUH	32128	2023-07-05	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	7U7N	26382	2023-07-04	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	17.19	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.004	0.67	0.0	0.04	17.50	0.00	2.113	9.85	0.13	3.4	96.6	0.0	1.04	0.34	0.74	0.77	2.17	7284	884	10	0	16	0	0	logfile
✘	7SCJ	25036	2023-07-05	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	11.12	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✔	7S8P	24900	2023-07-04	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	8EU8	28608	2023-07-07	2022-10-18	3.73	2.48	3.71	2.2	0.014	1.81	0.0	0.10	13.04	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.3	0.004	0.75	0.0	0.05	16.60	0.00	2.163	9.80	0.93	4.1	95.9	0.0	-0.17	0.67	0.75	0.75	1.81	14181	1692	24	0	63	0	0	logfile
✔	7WXW	32882	2023-07-04	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile
✘	8F2S	28826	2023-07-08	2022-11-08	2.9	3.73	2.80	3.3	0.015	0.82	0.0	0.18	15.95	0.00	2.129	3.82	0.00	4.3	95.7	0.0	0.98	0.81	0.89	4.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17158	2023	15	0	38	0	0	logfile
✔	6JPQ	9870	2023-07-13	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.45	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.004	0.82	0.0	0.05	12.94	0.01	2.056	29.36	0.00	9.2	90.8	0.0	-2.14	1.80	0.83	0.81	—	27768	3462	6	0	0	0	0	logfile
✔	7WRB	32721	2023-07-14	2022-01-26	2.88	3.16	—	3.3	0.006	1.01	0.0	0.05	10.44	0.01	2.276	6.29	0.12	6.0	93.9	0.1	-3.78	0.70	0.79	2.33	3.3	0.005	0.82	0.0	0.05	16.25	0.00	2.208	14.34	3.22	4.6	95.4	0.0	0.26	0.92	0.70	0.83	1.96	30376	3720	8	0	4	0	0	logfile
✔	7WZ7	32905	2023-07-04	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	8SAZ	40285	2023-07-09	2023-04-02	3.9	4.14	3.89	4.1	0.006	0.98	0.0	0.05	14.32	0.01	2.168	2.47	0.14	5.4	94.5	0.1	-1.89	0.72	0.76	2.12	4.1	0.003	0.79	0.0	0.04	16.20	0.00	2.107	9.04	0.52	5.2	94.7	0.2	-1.27	1.45	0.76	0.82	2.25	19960	2466	24	0	65	0	0	logfile
✔	8SAS	40278	2023-07-09	2023-04-01	4.0	4.28	4.02	4.2	0.008	1.18	0.0	0.06	13.80	0.01	2.002	4.09	0.00	8.7	90.9	0.4	-3.16	0.69	0.72	—	4.2	0.005	0.88	0.0	0.05	16.52	0.00	2.037	14.56	0.98	8.4	91.3	0.3	-2.21	1.04	0.74	0.80	—	20028	2472	24	0	66	0	0	logfile
✔	6E0H	8948	2023-07-05	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.79	0.0	0.04	12.39	0.00	2.138	10.64	0.00	5.5	94.5	0.0	-0.95	0.90	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	7V9M	31825	2023-07-04	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.52	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.64	0.0	0.04	15.71	0.00	2.147	10.27	0.23	3.5	96.5	0.0	0.70	1.16	0.72	0.75	2.03	8138	1029	6	0	0	0	0	logfile
✔	7XKF	33250	2023-07-06	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.16	0.01	2.055	14.66	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.63	0.0	0.04	16.41	0.00	2.177	9.10	2.36	4.4	95.6	0.0	0.66	1.17	0.74	0.86	2.88	7961	1008	5	0	1	0	0	logfile
✔	7T20	25607	2023-07-10	2021-12-02	4.7	8.85	—	7.6	0.004	0.63	0.0	0.04	11.19	0.00	2.079	7.50	3.24	2.3	97.6	0.2	0.68	0.91	0.76	—	7.4	0.003	0.61	0.0	0.04	11.70	0.00	1.836	23.54	0.00	3.7	96.2	0.1	1.25	1.62	0.93	0.77	—	21106	2661	11	10	8	0	0	logfile
✔	7WGZ	32493	2023-07-10	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	12.62	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.56	0.0	0.04	12.79	0.00	2.137	11.76	0.00	5.3	94.7	0.1	-0.07	0.47	0.86	0.83	—	21920	2879	11	0	25	0	0	logfile

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