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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oEQ | 20034 | 2023-02-23 | 2019-03-27 | 4.3 | 4.55 | — | 4.3 | 0.009 | 1.05 | 0.0 | 0.06 | 22.94 | 0.01 | 1.742 | 8.94 | 0.62 | 8.7 | 91.2 | 0.1 | -4.02 | 0.88 | 0.82 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 21.80 | 0.00 | 1.986 | 13.74 | 0.00 | 5.9 | 94.1 | 0.1 | -1.25 | 1.23 | 0.88 | 0.81 | — | 19134 | 1910 | 10 | 206 | 4 | 0 | 0 | logfile |
✔ | 6TG9 | 10495 | 2023-02-25 | 2019-11-15 | 3.24 | 3.34 | — | 3.3 | 0.016 | 1.33 | 0.0 | 0.06 | 14.65 | 0.00 | 1.847 | 11.53 | 0.62 | 7.8 | 92.0 | 0.2 | -4.02 | 0.80 | 0.78 | 3.11 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 1.975 | 10.47 | 0.23 | 5.3 | 94.5 | 0.1 | -1.22 | 0.68 | 0.83 | 0.84 | 2.89 | 25412 | 3318 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 7MYN | 24081 | 2023-02-19 | 2021-05-21 | 2.79 | 3.01 | 2.81 | 3.2 | 0.003 | 0.71 | 0.0 | 0.04 | 14.11 | 0.00 | 2.280 | 7.01 | 0.26 | 2.5 | 97.5 | 0.0 | -0.41 | 0.65 | 0.79 | 2.43 | 3.1 | 0.005 | 0.78 | 0.0 | 0.05 | 17.60 | 0.00 | 2.122 | 15.90 | 1.38 | 3.2 | 96.8 | 0.0 | 0.23 | 1.17 | 0.64 | 0.81 | 2.59 | 10426 | 1253 | 3 | 0 | 0 | 8 | 0 | logfile |
✘ | 7YET | 33777 | 2023-02-20 | 2022-07-06 | 3.3 | 3.55 | — | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 14.41 | 0.01 | 2.204 | 7.29 | 0.23 | 5.9 | 93.7 | 0.4 | 1.31 | 0.70 | 0.81 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11862 | 1493 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VMD | 21240 | 2023-02-26 | 2020-01-27 | 4.53 | 4.68 | — | 4.5 | 0.008 | 1.16 | 0.0 | 0.06 | 16.43 | 0.01 | 2.192 | 12.90 | 0.78 | 10.1 | 89.7 | 0.1 | -3.98 | 0.92 | 0.83 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 14.96 | 0.00 | 2.015 | 17.21 | 0.03 | 7.5 | 92.4 | 0.1 | -1.14 | 0.63 | 0.92 | 0.82 | — | 27501 | 3576 | 14 | 0 | 5 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-02-25 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✔ | 6oFE | 20043 | 2023-02-20 | 2019-03-29 | 3.61 | 3.70 | — | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 10.07 | 0.01 | 2.325 | 1.57 | 0.00 | 5.3 | 94.7 | 0.0 | -6.24 | 0.64 | 0.85 | 2.72 | 3.6 | 0.003 | 0.56 | 0.0 | 0.03 | 16.25 | 0.00 | 2.166 | 6.08 | 0.46 | 3.9 | 96.1 | 0.0 | 3.89 | 0.61 | 0.65 | 0.86 | 1.19 | 12220 | 1560 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F8W | 31494 | 2023-02-18 | 2021-07-02 | 3.1 | 2.94 | — | 3.2 | 0.005 | 1.04 | 0.0 | 0.06 | 14.09 | 0.01 | 2.273 | 8.70 | 0.00 | 4.6 | 95.4 | 0.0 | -1.99 | 0.54 | 0.58 | 1.20 | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.01 | 0.00 | 2.035 | 18.99 | 0.65 | 5.4 | 94.6 | 0.0 | -0.80 | 1.22 | 0.58 | 0.65 | 0.61 | 8486 | 1087 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NT9 | 12585 | 2023-02-26 | 2021-03-09 | 3.36 | 3.62 | 3.55 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 13.42 | 0.00 | 2.229 | 6.32 | 0.00 | 3.8 | 96.2 | 0.0 | -0.98 | 0.78 | 0.81 | 2.31 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 14.57 | 0.00 | 2.198 | 6.70 | 0.04 | 4.8 | 95.2 | 0.0 | -0.91 | 0.36 | 0.80 | 0.84 | 2.34 | 26952 | 3261 | 39 | 0 | 87 | 132 | 0 | logfile |
✔ | 7U6E | 26364 | 2023-02-18 | 2022-03-03 | 3.0 | 3.18 | 2.99 | 3.1 | 0.008 | 0.90 | 0.0 | 0.06 | 14.06 | 0.01 | 2.171 | 5.91 | 1.82 | 4.6 | 95.3 | 0.1 | -2.19 | 0.79 | 0.74 | 2.42 | 3.1 | 0.004 | 0.77 | 0.0 | 0.05 | 16.46 | 0.00 | 2.167 | 14.99 | 1.82 | 4.8 | 95.2 | 0.0 | -1.61 | 1.66 | 0.81 | 0.77 | 1.91 | 8004 | 974 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 8EFE | 28081 | 2023-02-18 | 2022-09-08 | 3.8 | 4.45 | 3.82 | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 14.48 | 0.00 | 1.948 | 8.30 | 0.52 | 3.8 | 96.2 | 0.0 | 1.15 | 0.93 | 0.82 | 1.08 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 16.07 | 0.00 | 1.911 | 12.38 | 0.52 | 4.3 | 95.7 | 0.0 | 0.87 | 0.44 | 0.93 | 0.84 | 1.02 | 7135 | 886 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SWo | 25477 | 2023-02-17 | 2021-11-20 | 4.1 | 3.78 | — | 3.8 | 0.007 | 0.89 | 0.0 | 0.05 | 14.43 | 0.01 | 2.215 | 26.02 | 0.19 | 10.0 | 90.0 | 0.0 | -2.59 | 0.65 | 0.76 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 13.81 | 0.01 | 2.118 | 18.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.25 | 0.53 | 0.64 | 0.74 | — | 4784 | 627 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UY5 | 26863 | 2023-02-26 | 2022-05-06 | 3.5 | 3.20 | 3.49 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 16.22 | 0.00 | 2.182 | 6.99 | 0.04 | 2.8 | 97.2 | 0.0 | 0.64 | 0.76 | 0.72 | 1.86 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 17.50 | 0.00 | 2.172 | 9.06 | 0.16 | 3.7 | 96.3 | 0.0 | 0.48 | 0.40 | 0.78 | 0.75 | 1.77 | 25772 | 2690 | 13 | 170 | 2 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2023-02-17 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PKo | 13474 | 2023-02-23 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.180 | 12.19 | 0.62 | 5.6 | 94.4 | 0.0 | -0.75 | 0.64 | 0.75 | 0.81 | 2.41 | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C0M | 30267 | 2023-02-27 | 2020-05-01 | 3.9 | 4.76 | — | 3.8 | 0.011 | 0.83 | 0.0 | 0.05 | 27.43 | 0.00 | 2.189 | 13.32 | 0.73 | 5.5 | 94.5 | 0.0 | -1.85 | 0.76 | 0.57 | 1.06 | 3.8 | 0.005 | 0.64 | 0.0 | 0.04 | 27.55 | 0.00 | 1.976 | 14.65 | 0.10 | 3.7 | 96.3 | 0.0 | 1.75 | 1.25 | 0.86 | 0.76 | 0.89 | 29816 | 2234 | 24 | 580 | 2 | 0 | 0 | logfile |
✔ | 7M99 | 23720 | 2023-02-22 | 2021-03-30 | 3.2 | 2.95 | 3.12 | 3.2 | 0.014 | 1.53 | 0.0 | 0.10 | 16.60 | 0.01 | 1.823 | 7.28 | 0.45 | 1.8 | 98.2 | 0.0 | -0.49 | 0.52 | 0.69 | 1.97 | 3.2 | 0.006 | 0.68 | 0.0 | 0.04 | 19.31 | 0.01 | 1.836 | 6.97 | 0.33 | 3.9 | 96.1 | 0.0 | 0.53 | 2.05 | 0.60 | 0.83 | 2.41 | 17613 | 2056 | 17 | 42 | 14 | 0 | 0 | logfile |
✔ | 6V1i | 21012 | 2023-02-19 | 2019-11-20 | 3.8 | 4.10 | 3.68 | 3.8 | 0.007 | 0.90 | 0.0 | 0.04 | 9.43 | 0.01 | 2.433 | 1.82 | 0.00 | 1.5 | 98.5 | 0.0 | -3.88 | 0.93 | 0.89 | 1.99 | 3.8 | 0.002 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.170 | 7.01 | 0.00 | 1.5 | 98.5 | 0.0 | 4.93 | 0.83 | 0.93 | 0.89 | 1.26 | 9711 | 1233 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZL4 | 14777 | 2023-02-18 | 2022-04-13 | 3.45 | 3.63 | 3.43 | 3.5 | 0.007 | 1.39 | 0.0 | 0.09 | 16.42 | 0.00 | 2.498 | 3.15 | 0.00 | 1.8 | 98.2 | 0.0 | -4.06 | 0.67 | 0.70 | 0.89 | 3.5 | 0.003 | 0.59 | 0.0 | 0.05 | 15.72 | 0.00 | 2.019 | 12.58 | 0.55 | 5.0 | 95.0 | 0.0 | -2.15 | 1.02 | 0.72 | 0.77 | 2.06 | 6678 | 465 | 4 | 0 | 0 | 0 | 3291 | logfile |
✔ | 6H61 | 0143 | 2023-02-19 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 9.67 | 0.00 | 2.107 | 14.74 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.04 | 11.88 | 0.00 | 2.039 | 25.21 | 0.00 | 8.0 | 92.0 | 0.0 | 0.45 | 1.84 | 0.63 | 0.78 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |