Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C96	7434	2023-08-12	2018-01-25	3.4	3.54	—	3.5	0.010	1.05	0.0	0.06	10.48	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.003	0.65	0.0	0.04	15.42	0.00	2.140	7.49	0.38	4.1	95.9	0.0	1.07	0.76	0.59	0.83	1.85	12090	1446	6	0	8	0	0	logfile
✔	6XoS	22278	2023-08-10	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.74	0.0	0.04	14.50	0.00	2.139	8.51	0.12	2.1	97.9	0.0	1.56	0.98	0.89	0.85	1.81	7704	966	1	0	0	0	0	logfile
✔	7ZRM	14919	2023-08-12	2022-05-04	3.7	3.18	3.69	3.5	0.004	0.81	0.0	0.05	14.87	0.01	2.260	7.18	0.00	5.1	94.9	0.0	-1.35	0.64	0.79	0.91	3.5	0.003	0.58	0.0	0.04	16.43	0.00	2.204	11.63	0.44	4.6	95.4	0.0	0.02	1.07	0.64	0.81	1.11	10839	1450	6	0	7	0	0	logfile
✔	7ZRi	14915	2023-08-12	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	15.75	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	3.6	0.003	0.56	0.0	0.04	16.09	0.00	2.165	10.32	0.18	4.0	96.0	0.0	0.31	0.31	0.70	0.83	1.45	11014	1450	6	0	9	0	0	logfile
✔	6J8i	9782	2023-08-12	2019-01-19	3.2	3.36	—	3.3	0.010	1.51	0.0	0.16	22.06	0.01	1.829	71.34	28.73	2.5	96.2	1.3	2.78	0.59	0.76	1.66	3.4	0.004	0.81	0.0	0.06	18.15	0.00	2.127	9.72	0.54	4.2	95.6	0.2	0.81	0.93	0.60	0.83	1.64	11764	1433	8	0	12	0	0	logfile
✔	6oSA	20181	2023-08-11	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.42	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.4	0.004	0.70	0.0	0.04	16.19	0.00	2.160	10.36	3.26	3.5	96.5	0.0	0.72	1.67	0.64	0.81	2.22	7338	937	5	0	0	0	0	logfile
✔	6HRA	0257	2023-08-12	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.003	0.72	0.0	0.04	13.93	0.00	2.089	12.23	1.06	4.9	95.1	0.0	-0.84	1.64	0.71	0.85	1.41	10818	1450	5	0	3	0	0	logfile
✔	6XoU	22280	2023-08-10	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.85	0.0	0.04	14.98	0.00	2.141	12.38	0.70	2.9	97.1	0.0	1.17	1.78	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	6YAE	10747	2023-08-13	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.68	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.70	0.0	0.04	16.46	0.00	2.086	11.55	0.33	4.4	95.4	0.2	0.68	0.66	0.76	0.83	1.01	13707	1717	4	0	0	0	0	logfile
✔	7XoH	33348	2023-08-13	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	32.89	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.005	0.74	0.0	0.05	14.79	0.00	2.129	10.74	0.28	9.3	90.7	0.0	-1.64	1.21	0.73	0.84	2.49	13524	1832	8	0	4	0	0	logfile
✔	6XZQ	10665	2023-08-10	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.57	0.0	0.04	15.83	0.00	1.951	8.55	0.10	4.5	95.5	0.0	-0.15	0.76	0.90	0.82	1.89	56888	3492	8	19	0	0	28480	logfile
✔	6QM9	4592	2023-08-12	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.74	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.66	0.0	0.04	16.73	0.00	2.167	8.54	0.52	3.5	96.5	0.0	0.54	0.56	0.75	0.84	1.82	10878	1346	4	0	4	0	0	logfile
✔	7BP3	30143	2023-08-09	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.004	0.88	0.0	0.05	17.93	0.00	2.102	16.43	0.31	6.3	93.7	0.0	-0.15	1.32	0.49	0.74	1.21	6080	788	2	0	0	0	0	logfile
✔	6Q2J	20572	2023-08-13	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.67	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.79	0.0	0.05	12.08	0.00	2.100	11.28	0.00	5.5	94.5	0.0	-1.64	2.03	0.68	0.58	—	13796	1738	8	0	22	0	0	logfile
✔	7SQo	25389	2023-08-14	2021-11-05	3.17	3.84	—	3.7	0.004	0.59	0.0	0.04	13.24	0.01	2.198	10.21	0.00	4.2	95.8	0.0	-0.20	0.58	0.72	2.92	3.7	0.003	0.53	0.0	0.04	14.78	0.00	2.188	8.22	0.11	3.9	96.1	0.0	-0.10	2.13	0.61	0.77	2.70	16949	1111	6	0	5	0	8331	logfile
✔	7Q3E	13790	2023-08-19	2021-10-27	3.35	4.16	3.48	3.8	0.013	1.33	0.0	0.07	12.61	0.01	2.398	1.15	0.00	1.0	99.0	0.0	0.59	0.85	0.77	2.34	3.8	0.003	0.61	0.0	0.04	14.58	0.00	2.026	10.84	0.14	3.4	96.6	0.0	0.85	0.89	0.85	0.80	1.95	26622	1672	4	0	1	0	13368	logfile
✔	7M42	23662	2023-08-10	2021-03-19	3.3	3.66	—	3.6	0.002	0.56	0.0	0.04	12.89	0.00	2.128	6.83	1.22	3.5	96.4	0.1	-2.65	0.63	0.65	3.52	3.6	0.003	0.62	0.0	0.04	14.81	0.00	2.071	7.59	0.22	5.1	94.8	0.1	-0.97	0.95	0.68	0.84	3.57	8115	1070	6	0	3	0	0	logfile
✔	7T55	25695	2023-08-12	2021-12-11	4.1	4.86	4.16	4.3	0.004	0.71	0.0	0.04	13.29	0.00	1.743	14.08	0.24	2.9	97.0	0.1	0.26	0.75	0.76	—	4.3	0.004	0.62	0.0	0.04	13.11	0.00	1.874	14.00	0.00	3.3	96.7	0.0	1.43	1.26	0.79	0.85	—	11460	1464	6	0	4	0	0	logfile
✔	7VWZ	32166	2023-08-22	2021-11-12	4.0	2.61	—	2.6	0.006	1.01	0.0	0.06	18.48	0.01	2.148	10.68	1.10	8.8	91.0	0.2	-5.04	0.59	0.58	—	2.6	0.004	0.72	0.0	0.04	19.81	0.01	2.014	17.13	0.52	9.2	90.8	0.0	-2.92	0.80	0.59	0.59	—	34509	4045	11	129	3	0	0	logfile
✔	6TQM	10555	2023-08-24	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile

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