Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6ZCA	31485	2023-02-26	2020-06-10	4.2	4.22	—	4.7	0.003	0.63	0.0	0.04	13.46	0.00	2.127	13.88	0.03	7.8	92.1	0.1	-3.26	-0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28721	3592	8	0	49	0	0	logfile
✔	6VYB	22748	2023-02-24	2020-02-25	3.2	3.61	4.19	10.0	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.53	0.13	2.4	97.5	0.1	0.50	-0.01	-0.01	0.12	3.4	0.003	0.66	0.0	0.05	12.68	0.00	2.123	10.83	0.09	4.0	96.0	0.1	-0.55	1.03	0.03	0.09	0.43	22365	2875	18	0	59	0	0	logfile
✘	5X1G	6701	2023-02-16	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5LNK	4479	2023-02-24	2016-08-04	3.9	3.83	7.93	96.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.00	0.00	-0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63760	7918	61	0	144	0	0	logfile
✘	6BAJ	12043	2023-02-25	2017-10-13	3.2	3.27	—	20.0	0.008	1.40	0.0	0.06	15.64	0.01	2.131	6.74	1.74	6.6	93.0	0.4	-4.66	0.01	0.00	0.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24318	3042	7	0	42	1	0	logfile
✔	5MSH	3565	2023-02-17	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.004	0.86	0.0	0.05	12.82	0.01	2.120	16.79	0.00	6.8	93.0	0.2	-1.06	2.67	0.05	0.16	—	4287	551	2	0	0	0	0	logfile
✔	5LNK	4481	2023-02-24	2016-08-04	3.9	3.95	17.72	71.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.01	0.00	0.13	40.0	0.009	1.71	0.0	0.31	13.69	0.01	1.425	16.41	0.33	10.3	89.5	0.3	-1.27	0.81	0.05	0.14	0.19	63760	7918	61	0	144	0	0	logfile
✔	5M6S	3451	2023-02-16	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6UZZ	33318	2023-02-21	2019-11-16	3.1	3.28	3.51	36.0	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.02	0.00	0.27	3.1	0.003	0.66	0.0	0.04	14.00	0.00	2.048	10.48	0.12	3.1	96.9	0.0	1.34	2.50	0.07	0.13	-0.03	15832	1984	12	0	8	0	0	logfile
✘	6ZGE	23581	2023-02-26	2020-06-18	2.6	2.44	2.70	10.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.03	0.00	0.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26991	3294	39	0	81	48	0	logfile
✔	6M71	11007	2023-02-18	2020-03-16	2.9	3.22	3.22	51.0	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.04	0.02	0.33	3.1	0.004	0.73	0.0	0.04	15.84	0.00	2.163	13.70	3.17	5.0	95.0	0.0	-0.20	1.62	0.06	0.05	-0.05	8614	1085	4	0	0	0	0	logfile
✘	6RoH	32512	2023-02-20	2019-05-13	2.8	2.20	—	40.0	0.006	0.88	0.0	0.05	13.67	0.01	1.709	4.00	0.23	3.4	96.6	0.0	-4.73	0.04	0.00	0.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11758	1449	7	0	9	2	0	logfile
✔	7UR5	26705	2023-02-17	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.83	0.0	0.04	20.54	0.01	2.027	14.87	0.00	0.0	0.0	0.0	—	1.86	0.08	0.65	—	5709	0	3	270	0	0	0	logfile
✘	6RiC	11824	2023-02-27	2019-04-23	2.8	1.94	—	49.0	0.006	0.75	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.05	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29677	3663	12	0	5	0	0	logfile
✔	6PB1	26104	2023-02-18	2019-06-12	2.8	2.98	—	40.0	0.003	0.79	0.0	0.06	8.98	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.05	0.02	0.34	2.9	0.003	0.65	0.0	0.04	14.12	0.00	2.156	12.00	2.15	3.2	96.8	0.0	-0.89	2.36	0.11	0.20	0.34	8785	1069	7	0	9	0	0	logfile
✔	7URi	26713	2023-02-16	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6ZGE	23580	2023-02-26	2020-06-18	2.6	2.72	2.67	20.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.06	0.00	0.14	20.0	0.005	0.78	0.0	0.05	13.62	0.00	2.128	9.50	1.01	4.8	95.2	0.0	-0.90	0.80	0.12	0.12	0.37	26991	3294	39	0	81	48	0	logfile
✔	7D77	32838	2023-02-18	2020-10-03	2.9	3.07	—	20.0	0.008	0.78	0.0	0.06	13.51	0.00	2.107	8.48	0.21	3.7	96.3	0.0	-2.58	0.07	0.01	0.37	3.0	0.005	0.85	0.0	0.05	15.51	0.01	2.082	17.53	2.15	5.8	94.1	0.1	-0.58	1.02	0.14	0.18	0.47	8785	1105	7	0	7	1	0	logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	6N4B	0745	2023-02-18	2018-11-18	3.0	3.44	—	39.0	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.08	0.01	0.16	3.4	0.004	0.81	0.0	0.04	12.42	0.00	2.081	12.08	0.96	5.4	94.6	0.0	-0.45	1.11	0.13	0.14	0.19	8453	1121	6	0	3	0	0	logfile

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