Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L4S	0833	2022-07-02	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	7ABK	11698	2022-07-02	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.67	0.0	0.03	19.97	0.01	2.302	7.56	0.62	2.1	97.9	0.0	5.19	1.33	0.28	0.85	1.55	1574	196	1	0	0	0	0	logfile
✔	7U11	26274	2022-07-03	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.92	0.26	10.0	90.0	0.0	-3.49	1.44	0.31	0.69	3.96	3456	405	6	0	12	0	0	logfile
✔	7M3L	23656	2022-07-03	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.79	0.0	0.04	15.22	0.00	2.136	17.40	0.45	8.2	91.7	0.1	-1.01	3.82	0.46	0.76	2.14	6113	775	3	0	0	0	0	logfile
✔	7U12	26275	2022-07-03	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.005	0.86	0.0	0.06	15.96	0.00	2.181	16.28	0.00	10.5	89.5	0.0	-3.98	2.91	0.34	0.57	2.51	3456	405	6	0	12	0	0	logfile
✔	6H5i	0140	2022-07-02	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.45	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	7U16	26279	2022-07-03	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	7PAG	13269	2022-07-03	2021-07-29	4.0	4.22	—	4.1	0.004	0.74	0.0	0.05	13.83	0.01	2.177	12.91	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.003	0.97	0.0	0.05	16.30	0.00	2.192	15.83	0.00	6.3	93.7	0.0	-2.53	1.31	0.33	0.66	—	4040	509	1	0	4	0	0	logfile
✔	7U13	26276	2022-07-03	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile
✔	7U14	26277	2022-07-03	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	6TQM	10555	2022-07-07	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.53	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	7QL2	14061	2022-07-02	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.005	0.63	0.0	0.05	12.52	0.01	2.550	1.75	2.96	9.0	91.0	0.0	-3.01	0.80	0.25	0.74	5.06	2286	150	3	0	0	0	1179	logfile
✔	5JXL	8179	2022-07-04	2016-05-13	3.5	3.48	—	3.6	0.008	1.38	0.0	0.06	9.65	0.00	1.795	18.18	0.15	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.005	0.87	0.0	0.05	15.93	0.01	2.104	13.41	0.83	8.0	91.6	0.4	-1.86	1.53	0.30	0.83	2.04	69993	9361	11	0	0	0	0	logfile
✘	7WHP	32507	2022-07-04	2021-12-31	3.7	3.28	—	3.3	0.003	0.56	0.0	0.04	14.33	0.01	2.209	8.60	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17038	2114	4	0	6	0	0	logfile
✔	7P3R	13185	2022-07-03	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.58	0.0	0.04	14.64	0.00	2.165	4.67	0.56	2.1	97.9	0.0	3.57	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7S1Z	24813	2022-07-03	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.27	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.003	0.60	0.0	0.04	14.60	0.00	2.198	10.17	0.00	9.5	90.5	0.0	0.06	1.15	0.50	0.70	1.52	6416	944	2	0	0	0	0	logfile
✔	6DLU	7957	2022-07-03	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.65	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.73	0.0	0.04	13.95	0.00	1.939	9.23	0.15	5.5	94.5	0.0	-0.12	2.18	0.32	0.82	1.56	11991	1481	4	0	4	0	0	logfile
✔	7RTN	24684	2022-07-03	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.11	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.51	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	3J7A	2660	2022-07-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.51	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile
✔	3JC1	6461	2022-07-06	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.009	0.98	2.0	0.04	15.96	0.00	1.718	14.77	0.23	1.9	98.1	0.0	3.07	1.23	0.43	0.75	—	92106	11628	68	0	0	0	0	logfile

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