Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UiU	26553	2022-12-11	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	6K32	9907	2022-12-12	2019-05-16	3.2	3.73	—	3.8	0.009	1.20	1.0	0.08	11.34	0.01	1.345	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.77	0.0	0.05	16.36	0.00	1.183	13.29	0.74	6.1	93.9	0.1	-1.29	1.62	0.31	0.83	2.35	61364	7723	10	8	6	0	0	logfile
✔	6L4S	0833	2022-12-11	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.74	2.16	2268	330	6	0	0	0	0	logfile
✔	5MPE	3535	2022-12-21	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.98	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.003	0.80	0.0	0.04	14.92	0.00	1.932	18.88	0.00	5.5	94.2	0.3	-0.54	2.08	0.36	0.67	—	40974	5142	13	0	0	0	0	logfile
✔	7U12	26275	2022-12-11	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.76	0.00	2.102	13.33	0.79	9.3	90.7	0.0	-3.91	2.90	0.33	0.57	2.24	3456	405	6	0	12	0	0	logfile
✔	8F0U	28781	2022-12-15	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.65	0.00	0.8	99.2	0.0	0.72	0.29	0.30	0.88	3.5	0.004	0.65	0.0	0.05	13.79	0.00	1.946	7.23	0.10	5.8	94.2	0.0	-0.55	0.97	0.50	0.66	1.69	78260	5252	39	0	0	0	39819	logfile
✔	7XMX	33307	2022-12-16	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.004	0.73	0.0	0.05	14.45	0.00	2.073	13.41	0.38	6.3	93.6	0.1	-1.25	1.16	0.34	0.17	0.17	28727	3700	12	0	24	0	0	logfile
✔	7U16	26279	2022-12-11	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.36	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	6H5i	0140	2022-12-11	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	15.15	0.00	2.076	14.87	0.34	4.1	95.9	0.0	1.09	1.96	0.38	0.25	0.14	43900	5392	26	0	0	0	0	logfile
✔	7M3L	23656	2022-12-11	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.77	0.0	0.04	15.42	0.00	2.131	15.89	0.00	7.8	92.1	0.1	-1.04	3.81	0.46	0.75	2.10	6113	775	3	0	0	0	0	logfile
✔	7U11	26274	2022-12-11	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.92	0.26	10.0	90.0	0.0	-3.49	1.44	0.29	0.68	3.96	3456	405	6	0	12	0	0	logfile
✔	7WHP	32507	2022-12-13	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	14.19	0.01	2.209	8.60	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.56	0.0	0.04	16.21	0.00	2.112	8.90	0.37	3.1	96.8	0.0	-0.45	1.54	0.30	0.77	2.42	17038	2114	4	0	6	0	0	logfile
✔	7PAG	13269	2022-12-11	2021-07-29	4.0	4.22	—	4.1	0.004	0.74	0.0	0.05	13.83	0.01	2.177	12.91	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	0.95	0.0	0.05	16.27	0.00	2.167	18.11	0.00	9.3	90.7	0.0	-2.97	1.33	0.33	0.67	—	4040	509	1	0	4	0	0	logfile
✔	7U13	26276	2022-12-11	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.33	0.56	1.24	3456	405	6	0	12	0	0	logfile
✔	7S1Z	24813	2022-12-11	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.27	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.003	0.60	0.0	0.04	14.60	0.00	2.198	10.17	0.00	9.5	90.5	0.0	0.06	1.15	0.47	0.68	1.52	6416	944	2	0	0	0	0	logfile
✔	7U14	26277	2022-12-11	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	7QL2	14061	2022-12-11	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.61	0.0	0.05	12.64	0.00	2.504	1.31	2.22	9.0	91.0	0.0	-2.99	1.14	0.22	0.71	4.06	2286	150	3	0	0	0	1179	logfile
✔	6TQM	10555	2022-12-20	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.76	0.0	0.04	16.03	0.00	1.930	15.53	0.24	9.8	90.2	0.0	-3.51	1.31	0.38	0.25	0.49	39616	2578	6	0	4	0	19804	logfile
✔	7P3R	13185	2022-12-11	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.58	0.0	0.04	14.64	0.00	2.165	4.67	0.56	2.1	97.9	0.0	3.57	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile

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