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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5MPE | 3535 | 2022-05-17 | 2016-12-16 | 4.5 | 4.55 | — | 4.5 | 0.034 | 3.32 | 297.0 | 0.19 | 17.16 | 0.03 | 1.158 | 3.98 | 2.25 | 5.2 | 92.6 | 2.2 | -1.86 | 0.28 | 0.39 | — | 4.5 | 0.004 | 0.87 | 0.0 | 0.04 | 14.95 | 0.00 | 2.008 | 22.40 | 0.02 | 6.2 | 93.4 | 0.3 | -1.12 | 2.47 | 0.36 | 0.68 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CBE | 7452 | 2022-05-02 | 2018-02-02 | 2.78 | 2.88 | — | 3.9 | 0.010 | 0.82 | 0.0 | 0.05 | 9.59 | 0.01 | 2.147 | 9.53 | 0.00 | 1.9 | 98.1 | 0.0 | -2.06 | 0.28 | 0.26 | 0.12 | 2.9 | 0.010 | 0.82 | 0.0 | 0.05 | 16.74 | 0.01 | 2.022 | 13.87 | 2.76 | 4.1 | 95.9 | 0.0 | -0.85 | 2.64 | 0.69 | 0.88 | 4.02 | 248520 | 31080 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M3L | 23656 | 2022-05-12 | 2021-03-18 | 3.2 | 4.99 | — | 3.3 | 0.009 | 0.97 | 0.0 | 0.06 | 15.05 | 0.01 | 1.551 | 6.78 | 0.30 | 9.1 | 90.6 | 0.3 | -3.19 | 0.29 | 0.38 | 0.40 | 3.1 | 0.004 | 0.79 | 0.0 | 0.04 | 15.22 | 0.00 | 2.136 | 17.40 | 0.45 | 8.2 | 91.7 | 0.1 | -1.01 | 3.82 | 0.46 | 0.76 | 2.14 | 6113 | 775 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-05-12 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.005 | 0.83 | 0.0 | 0.04 | 15.12 | 0.01 | 1.992 | 18.45 | 0.63 | 4.7 | 95.3 | 0.0 | 0.75 | 1.92 | 0.38 | 0.26 | 0.19 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U16 | 26279 | 2022-05-12 | 2022-02-19 | 2.7 | 3.30 | — | 3.5 | 0.003 | 0.55 | 0.0 | 0.05 | 14.72 | 0.00 | 2.310 | 8.58 | 0.00 | 6.8 | 93.2 | 0.0 | -2.67 | 0.29 | 0.68 | 2.62 | 3.5 | 0.004 | 0.57 | 0.0 | 0.06 | 16.80 | 0.00 | 2.186 | 8.14 | 0.79 | 5.8 | 94.2 | 0.0 | -2.64 | 1.73 | 0.37 | 0.80 | 4.99 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U11 | 26274 | 2022-05-12 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.004 | 0.67 | 0.0 | 0.06 | 16.16 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.3 | 0.005 | 0.74 | 0.0 | 0.06 | 17.39 | 0.00 | 2.138 | 11.92 | 0.26 | 10.0 | 90.0 | 0.0 | -3.49 | 1.44 | 0.31 | 0.69 | 3.96 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2022-05-12 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.02 | 0.0 | 0.07 | 16.79 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.2 | 0.005 | 0.86 | 0.0 | 0.06 | 15.96 | 0.00 | 2.181 | 16.28 | 0.00 | 10.5 | 89.5 | 0.0 | -3.98 | 2.91 | 0.34 | 0.57 | 2.51 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2022-05-12 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.90 | 0.0 | 0.06 | 18.13 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.006 | 0.96 | 0.0 | 0.07 | 15.68 | 0.00 | 2.175 | 21.37 | 0.00 | 14.8 | 85.2 | 0.0 | -4.22 | 1.65 | 0.34 | 0.63 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2022-05-12 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.64 | 0.00 | 2.165 | 4.67 | 0.56 | 2.1 | 97.9 | 0.0 | 3.57 | 0.56 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WHP | 32507 | 2022-05-14 | 2021-12-31 | 3.7 | 3.28 | — | 3.3 | 0.006 | 0.71 | 0.0 | 0.04 | 14.57 | 0.01 | 2.209 | 8.58 | 0.00 | 2.9 | 97.0 | 0.0 | -0.85 | 0.30 | 0.77 | 2.67 | 3.3 | 0.006 | 0.85 | 0.0 | 0.04 | 16.91 | 0.01 | 2.084 | 9.17 | 0.42 | 3.3 | 96.6 | 0.0 | -0.70 | 1.54 | 0.30 | 0.78 | 2.39 | 17038 | 2114 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2022-05-17 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.8 | 0.011 | 1.11 | 1.0 | 0.04 | 15.94 | 0.00 | 1.851 | 15.53 | 0.43 | 10.5 | 89.5 | 0.0 | -3.67 | 1.07 | 0.36 | 0.21 | 0.31 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 5JXL | 8179 | 2022-05-14 | 2016-05-13 | 3.5 | 3.48 | — | 3.6 | 0.008 | 1.38 | 0.0 | 0.06 | 9.65 | 0.00 | 1.795 | 18.18 | 0.15 | 8.7 | 89.0 | 2.2 | -2.06 | 0.30 | 0.77 | 1.70 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 15.93 | 0.01 | 2.104 | 13.41 | 0.83 | 8.0 | 91.6 | 0.4 | -1.86 | 1.53 | 0.30 | 0.83 | 2.04 | 69993 | 9361 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U13 | 26276 | 2022-05-12 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.017 | 2.41 | 0.0 | 0.07 | 17.78 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.016 | 1.69 | 0.0 | 0.06 | 18.32 | 0.01 | 1.980 | 40.70 | 3.15 | 11.0 | 89.0 | 0.0 | -3.17 | 3.39 | 0.28 | 0.50 | 1.09 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2022-05-12 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.4 | 0.005 | 0.63 | 0.0 | 0.05 | 12.52 | 0.01 | 2.550 | 1.75 | 2.96 | 9.0 | 91.0 | 0.0 | -3.01 | 0.80 | 0.25 | 0.74 | 5.06 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 7PAG | 13269 | 2022-05-12 | 2021-07-29 | 4.0 | 4.22 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.05 | 13.83 | 0.01 | 2.177 | 12.91 | 0.00 | 6.3 | 93.7 | 0.0 | -1.70 | 0.30 | 0.60 | — | 4.2 | 0.003 | 0.97 | 0.0 | 0.05 | 16.30 | 0.00 | 2.192 | 15.83 | 0.00 | 6.3 | 93.7 | 0.0 | -2.53 | 1.31 | 0.33 | 0.66 | — | 4040 | 509 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-05-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.010 | 1.23 | 1.0 | 0.05 | 16.68 | 0.01 | 1.239 | 23.62 | 0.25 | 9.1 | 90.9 | 0.0 | -2.51 | 2.13 | 0.41 | 0.22 | 0.62 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-05-14 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.58 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.74 | 0.0 | 0.04 | 18.16 | 0.01 | 1.853 | 17.51 | 0.94 | 8.9 | 89.8 | 1.2 | -1.90 | 2.71 | 0.39 | 0.76 | 1.01 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 3JC1 | 6461 | 2022-05-16 | 2015-11-09 | 4.0 | 4.30 | — | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 10.37 | 0.00 | 2.291 | 8.81 | 0.00 | 3.8 | 96.2 | 0.0 | -3.91 | 0.31 | 0.59 | — | 4.3 | 0.009 | 0.98 | 2.0 | 0.04 | 15.96 | 0.00 | 1.718 | 14.77 | 0.23 | 1.9 | 98.1 | 0.0 | 3.07 | 1.23 | 0.43 | 0.75 | — | 92106 | 11628 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTN | 24684 | 2022-05-12 | 2021-08-13 | 3.4 | 3.47 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.298 | 6.11 | 0.00 | 6.1 | 93.9 | 0.0 | 0.60 | 0.31 | 0.74 | 3.40 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 16.51 | 0.00 | 2.269 | 7.51 | 0.00 | 4.3 | 95.7 | 0.0 | 1.39 | 0.36 | 0.31 | 0.78 | 2.76 | 6018 | 810 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2022-05-13 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.65 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 13.95 | 0.00 | 1.939 | 9.23 | 0.15 | 5.5 | 94.5 | 0.0 | -0.12 | 2.18 | 0.32 | 0.82 | 1.56 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |