Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E0F	30931	2021-12-01	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.39	0.80	3.91	2022	294	6	0	0	0	0	logfile
✘	6MLU	9146	2021-12-01	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2516	306	2	0	0	0	0	logfile
✔	5V6P	8637	2021-12-01	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.62	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	6X16	21990	2021-12-01	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.002	0.56	0.0	0.04	15.07	0.00	2.191	8.24	0.00	3.5	96.5	0.0	0.91	0.32	0.46	0.78	1.38	9438	1248	6	0	6	0	0	logfile
✔	6X0V	21985	2021-12-01	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	5MM4	3529	2021-12-01	2016-12-08	4.5	4.77	—	4.7	0.008	1.13	0.0	0.06	12.07	0.01	2.041	12.45	0.10	10.8	89.2	0.0	-4.68	0.40	0.73	—	4.7	0.003	0.76	0.0	0.05	14.36	0.01	1.992	21.33	0.00	7.4	92.6	0.0	-2.18	1.76	0.41	0.73	—	9776	1236	6	1	5	0	0	logfile
✔	7DWV	30887	2021-12-01	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	18.36	0.00	23.2	76.8	0.0	-5.96	1.50	0.40	0.74	2.79	2064	258	6	0	0	0	0	logfile
✔	6PEo	20328	2021-12-01	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.74	0.00	2.435	9.07	0.00	8.1	91.9	0.0	-2.61	1.64	0.41	0.82	4.88	2205	320	5	0	0	0	0	logfile
✔	7K8B	22725	2021-12-01	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.64	0.64	5543	726	1	0	0	0	0	logfile
✔	6N3B	9350	2021-12-01	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.70	1.88	2735	385	10	0	0	0	0	logfile
✔	6oEU	7795	2021-12-01	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.63	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✔	7RTV	24690	2021-12-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	6U5H	20646	2021-12-01	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.014	1.48	1.0	0.05	15.62	0.01	2.118	24.19	0.00	15.4	84.6	0.0	-5.04	0.93	0.42	0.70	—	7326	954	3	0	0	0	0	logfile
✔	6YJ5	10816	2021-12-01	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	7.92	0.61	8.2	91.8	0.0	-1.96	0.81	0.50	0.72	2.81	2061	306	1	0	0	0	0	logfile
✔	3J2P	5499	2021-12-01	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.36	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.77	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	6DZY	8942	2021-12-01	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.93	4.0	0.08	8.53	0.01	1.386	9.07	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.004	0.85	0.0	0.04	13.23	0.00	2.043	17.96	0.00	5.8	94.1	0.1	-0.81	1.88	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	6JC3	9793	2021-12-01	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.002	0.68	0.0	0.04	13.77	0.00	2.192	10.58	0.00	4.4	95.6	0.0	0.92	3.51	0.42	0.79	—	3154	391	2	6	0	0	0	logfile
✔	6UZ3	20951	2021-12-01	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.21	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.82	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✔	6VW2	21410	2021-12-01	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.41	0.72	1.55	1800	240	10	0	0	0	0	logfile

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