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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T2E | 25611 | 2023-02-16 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QWM | 14189 | 2023-02-17 | 2022-01-25 | 2.76 | 2.21 | 2.47 | 2.2 | 0.012 | 1.93 | 3.0 | 0.11 | 13.26 | 0.01 | 2.502 | 0.15 | 0.00 | 8.0 | 92.0 | 0.0 | -2.89 | 0.34 | 0.80 | 6.86 | 2.2 | 0.006 | 0.76 | 0.0 | 0.05 | 18.44 | 0.00 | 2.247 | 10.77 | 0.79 | 7.8 | 92.2 | 0.0 | -2.93 | 0.60 | 0.37 | 0.82 | 6.36 | 3255 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKZ | 14058 | 2023-02-16 | 2021-12-19 | 2.65 | 2.79 | 2.28 | 3.2 | 0.013 | 2.86 | 9.0 | 0.34 | 18.75 | 0.02 | 2.498 | 0.59 | 0.00 | 9.9 | 90.1 | 0.0 | -1.61 | 0.34 | 0.61 | 7.02 | 2.7 | 0.006 | 1.50 | 0.0 | 0.38 | 19.60 | 0.01 | 2.257 | 11.23 | 0.00 | 1.2 | 98.8 | 0.0 | -0.53 | 5.08 | 0.34 | 0.64 | 6.63 | 1701 | 99 | 9 | 0 | 0 | 0 | 891 | logfile |
✔ | 7QJW | 14024 | 2023-02-18 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.00 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.003 | 0.63 | 0.0 | 0.05 | 15.65 | 0.00 | 2.366 | 4.13 | 1.01 | 2.7 | 97.3 | 0.0 | -1.58 | 1.60 | 0.38 | 0.78 | 4.37 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7C1D | 30269 | 2023-02-16 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-02-21 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.5 | 0.006 | 1.23 | 0.0 | 0.06 | 14.56 | 0.01 | 1.854 | 41.71 | 0.00 | 6.7 | 93.3 | 0.0 | -3.29 | 3.82 | 0.26 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YBV | 10774 | 2023-02-18 | 2020-03-17 | 3.8 | 3.86 | 4.60 | 3.6 | 0.008 | 1.47 | 0.0 | 0.07 | 17.69 | 0.01 | 2.202 | 9.58 | 6.67 | 6.1 | 93.4 | 0.5 | -2.26 | 0.34 | 0.56 | 1.26 | 3.6 | 0.004 | 0.84 | 0.0 | 0.05 | 18.35 | 0.00 | 2.023 | 19.92 | 0.80 | 11.9 | 87.9 | 0.1 | -2.54 | 3.35 | 0.34 | 0.59 | 0.71 | 6731 | 769 | 5 | 78 | 0 | 0 | 0 | logfile |
✔ | 8C9M | 16511 | 2023-02-23 | 2023-01-23 | 3.2 | 4.11 | 2.97 | 4.1 | 0.023 | 1.43 | 0.0 | 0.11 | 9.58 | 0.01 | 2.432 | 1.40 | 0.00 | 2.7 | 96.5 | 0.9 | -0.57 | 0.34 | 0.70 | 1.19 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 15.77 | 0.00 | 2.186 | 4.75 | 0.43 | 3.2 | 96.8 | 0.0 | 2.36 | 1.03 | 0.20 | 0.60 | 0.94 | 21480 | 1368 | 6 | 0 | 0 | 0 | 10752 | logfile |
✔ | 7TLC | 25987 | 2023-02-24 | 2022-01-18 | 2.83 | 3.28 | — | 3.2 | 0.013 | 1.82 | 3.0 | 0.10 | 13.37 | 0.02 | 2.518 | 0.07 | 1.54 | 5.3 | 94.5 | 0.2 | -1.18 | 0.34 | 0.47 | 4.12 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.66 | 0.00 | 2.106 | 6.10 | 1.97 | 3.6 | 96.4 | 0.0 | 0.16 | 0.60 | 0.51 | 0.70 | 3.33 | 23058 | 2948 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-02-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 14.05 | 0.00 | 2.184 | 19.06 | 0.00 | 10.7 | 88.9 | 0.4 | -2.62 | 2.58 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADJ | 11727 | 2023-02-19 | 2020-09-15 | 2.8 | 3.02 | 2.79 | 3.0 | 0.014 | 1.99 | 4.0 | 0.11 | 14.68 | 0.01 | 2.562 | 0.51 | 0.18 | 6.9 | 93.1 | 0.0 | -2.18 | 0.34 | 0.70 | 3.50 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.18 | 0.00 | 2.131 | 7.42 | 2.57 | 7.9 | 92.1 | 0.0 | -1.24 | 1.53 | 0.40 | 0.77 | 2.99 | 9710 | 613 | 1 | 0 | 0 | 0 | 4790 | logfile |
✔ | 7ELL | 31184 | 2023-02-23 | 2021-04-12 | 3.8 | 4.24 | — | 3.8 | 0.006 | 0.86 | 1.0 | 0.05 | 14.83 | 0.01 | 1.176 | 17.74 | 0.62 | 8.9 | 90.9 | 0.2 | -2.13 | 0.35 | 0.86 | 1.77 | 3.8 | 0.004 | 0.77 | 1.0 | 0.05 | 16.00 | 0.00 | 2.044 | 12.26 | 0.43 | 4.4 | 95.5 | 0.1 | -0.01 | 1.30 | 0.34 | 0.88 | 1.92 | 60584 | 7917 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 7QJX | 14025 | 2023-02-21 | 2021-12-17 | 2.99 | 3.05 | 3.00 | 2.8 | 0.014 | 2.56 | 5.0 | 0.24 | 13.83 | 0.02 | 2.532 | 0.29 | 0.00 | 1.7 | 98.2 | 0.1 | -2.52 | 0.35 | 0.70 | 3.48 | 2.8 | 0.004 | 1.21 | 0.0 | 0.31 | 16.31 | 0.01 | 2.139 | 3.54 | 1.41 | 6.7 | 93.3 | 0.0 | -3.59 | 3.49 | 0.36 | 0.78 | 3.32 | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✔ | 6oEE | 20020 | 2023-02-26 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M7D | 30129 | 2023-02-17 | 2020-03-18 | 2.9 | 2.82 | — | 2.8 | 0.010 | 1.03 | 0.0 | 0.07 | 13.84 | 0.00 | 2.157 | 15.48 | 0.58 | 2.4 | 97.6 | 0.0 | -0.46 | 0.35 | 0.86 | 4.08 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 15.72 | 0.00 | 2.232 | 8.89 | 1.46 | 1.5 | 98.5 | 0.0 | 2.16 | 0.85 | 0.34 | 0.88 | 3.05 | 3280 | 412 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2023-02-24 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.68 | 0.0 | 0.04 | 10.92 | 0.00 | 2.087 | 11.59 | 0.00 | 9.1 | 90.9 | 0.0 | -1.48 | 1.09 | 0.39 | 0.65 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 7QKJ | 14044 | 2023-02-18 | 2021-12-17 | 3.26 | 3.08 | 3.11 | 3.2 | 0.012 | 2.04 | 12.0 | 0.16 | 11.59 | 0.01 | 2.510 | 0.21 | 0.00 | 9.9 | 90.1 | 0.0 | -2.24 | 0.35 | 0.71 | 3.92 | 3.2 | 0.005 | 0.79 | 0.0 | 0.05 | 15.54 | 0.00 | 2.135 | 10.82 | 0.25 | 7.9 | 92.1 | 0.0 | -2.54 | 1.07 | 0.36 | 0.85 | 3.02 | 6888 | 900 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JQQ | 22441 | 2023-02-26 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 23.12 | 0.01 | 1.379 | 26.29 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 22.83 | 0.00 | 1.952 | 22.62 | 0.00 | 9.6 | 90.4 | 0.0 | -2.18 | 0.49 | 0.35 | 0.58 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-02-19 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2023-02-16 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.65 | 0.0 | 0.05 | 15.68 | 0.00 | 2.258 | 4.48 | 0.00 | 2.3 | 97.7 | 0.0 | -2.63 | 1.57 | 0.30 | 0.77 | 2.79 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |