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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XTB | 10618 | 2023-08-09 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2023-08-25 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.003 | 0.78 | 0.0 | 0.04 | 14.55 | 0.01 | 2.062 | 20.07 | 0.00 | 6.0 | 93.7 | 0.2 | -1.26 | 1.24 | 0.50 | 0.18 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 8oRG | 17123 | 2023-08-09 | 2023-04-13 | 2.3 | 2.70 | 2.18 | 2.6 | 0.010 | 1.26 | 0.0 | 0.08 | 11.92 | 0.01 | 2.462 | 0.00 | 0.00 | 2.4 | 97.6 | 0.0 | -2.52 | 0.32 | 0.76 | 4.82 | 2.6 | 0.003 | 0.57 | 0.0 | 0.05 | 17.00 | 0.00 | 2.261 | 1.77 | 2.63 | 1.6 | 98.4 | 0.0 | -2.71 | 1.18 | 0.37 | 0.83 | 4.10 | 3966 | 258 | 3 | 0 | 0 | 0 | 2025 | logfile |
✔ | 8FXH | 29533 | 2023-08-21 | 2023-01-24 | 2.8 | 2.94 | 2.88 | 4.0 | 0.006 | 1.37 | 50.0 | 0.10 | 17.25 | 0.01 | 2.235 | 6.73 | 1.19 | 7.8 | 91.8 | 0.4 | -1.03 | 0.32 | 0.19 | 0.18 | 2.9 | 0.003 | 0.70 | 0.0 | 0.05 | 17.83 | 0.01 | 2.137 | 6.07 | 2.62 | 6.9 | 92.6 | 0.4 | -1.00 | 1.95 | 0.77 | 0.85 | 2.14 | 30228 | 3786 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTo | 24685 | 2023-08-10 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.002 | 0.64 | 0.0 | 0.04 | 16.57 | 0.00 | 2.236 | 7.92 | 0.16 | 5.3 | 94.7 | 0.0 | 1.56 | 0.51 | 0.33 | 0.78 | 1.86 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M3L | 3434 | 2023-08-15 | 2016-10-15 | 3.8 | 2.49 | — | 3.8 | 0.013 | 1.53 | 7.0 | 0.08 | 12.48 | 0.01 | 1.442 | 10.31 | 0.59 | 7.4 | 91.5 | 1.1 | -4.86 | 0.32 | 0.76 | 2.04 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.98 | 0.00 | 2.103 | 11.84 | 1.08 | 5.3 | 94.5 | 0.2 | -0.26 | 0.89 | 0.34 | 0.75 | 1.29 | 19007 | 2394 | 27 | 0 | 12 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2023-08-11 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.43 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.006 | 0.97 | 0.0 | 0.05 | 16.75 | 0.01 | 1.840 | 21.35 | 0.38 | 8.6 | 91.2 | 0.2 | -1.17 | 1.17 | 0.43 | 0.22 | 0.25 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7K23 | 22641 | 2023-08-17 | 2020-09-08 | 3.3 | 3.44 | 3.16 | 3.4 | 0.007 | 0.81 | 0.0 | 0.05 | 17.18 | 0.00 | 1.620 | 19.51 | 5.40 | 9.3 | 90.5 | 0.2 | -3.86 | 0.32 | 0.62 | 2.33 | 3.4 | 0.004 | 0.68 | 0.0 | 0.05 | 17.19 | 0.00 | 2.101 | 9.50 | 0.25 | 8.9 | 91.0 | 0.1 | -1.79 | 1.66 | 0.41 | 0.85 | 2.68 | 21923 | 2781 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2023-08-09 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.69 | 0.00 | 2.109 | 15.14 | 0.68 | 9.1 | 90.9 | 0.0 | -4.84 | 3.88 | 0.31 | 0.68 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oRE | 17121 | 2023-08-09 | 2023-04-13 | 2.5 | 2.67 | 2.44 | 2.7 | 0.011 | 2.09 | 7.0 | 0.14 | 10.93 | 0.01 | 2.570 | 0.00 | 0.00 | 8.0 | 92.0 | 0.0 | -2.10 | 0.32 | 0.74 | 5.29 | 2.7 | 0.003 | 0.69 | 0.0 | 0.05 | 17.33 | 0.00 | 2.218 | 3.60 | 1.00 | 6.7 | 93.3 | 0.0 | -1.84 | 3.46 | 0.37 | 0.81 | 5.04 | 3615 | 231 | 3 | 0 | 0 | 0 | 1845 | logfile |
✔ | 7QK5 | 14038 | 2023-08-11 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.10 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.63 | 0.0 | 0.05 | 18.16 | 0.01 | 2.237 | 3.82 | 1.88 | 3.9 | 96.1 | 0.0 | -1.69 | 1.47 | 0.36 | 0.82 | 7.53 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 7K8D | 22728 | 2023-08-12 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 13.50 | 0.01 | 2.094 | 15.68 | 0.00 | 4.9 | 95.1 | 0.0 | 0.82 | 1.46 | 0.41 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2023-08-09 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.73 | 0.0 | 0.05 | 14.81 | 0.00 | 2.500 | 7.22 | 0.00 | 13.2 | 86.8 | 0.0 | -5.75 | 1.27 | 0.31 | 0.69 | 4.86 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W2E | 21526 | 2023-08-12 | 2020-03-05 | 4.4 | 4.45 | — | 4.4 | 0.006 | 1.04 | 1.0 | 0.06 | 10.30 | 0.01 | 1.618 | 7.99 | 0.68 | 4.5 | 95.1 | 0.4 | -2.37 | 0.33 | 0.53 | — | 4.4 | 0.004 | 0.82 | 0.0 | 0.05 | 13.54 | 0.01 | 2.053 | 16.84 | 0.07 | 6.5 | 93.4 | 0.1 | -1.20 | 1.37 | 0.40 | 0.75 | — | 62525 | 7943 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TLD | 25988 | 2023-08-17 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.32 | 0.00 | 2.161 | 5.99 | 1.33 | 3.4 | 96.6 | 0.0 | 0.25 | 0.62 | 0.59 | 0.77 | 3.01 | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DWJ | 27756 | 2023-08-09 | 2022-08-01 | 3.9 | 3.19 | 3.82 | 3.1 | 0.005 | 1.05 | 0.0 | 0.06 | 15.49 | 0.01 | 2.218 | 13.71 | 0.33 | 5.9 | 94.1 | 0.0 | -2.71 | 0.33 | 0.57 | 0.88 | 3.0 | 0.004 | 0.74 | 0.0 | 0.05 | 17.49 | 0.01 | 2.206 | 22.07 | 0.66 | 5.6 | 94.4 | 0.0 | -1.64 | 2.56 | 0.33 | 0.58 | 0.80 | 3043 | 339 | 3 | 11 | 2 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-08-16 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7T4F | 25675 | 2023-08-10 | 2021-12-09 | 2.7 | 3.13 | 2.69 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.61 | 0.00 | 2.228 | 4.75 | 2.44 | 0.3 | 99.7 | 0.0 | 0.54 | 0.33 | 0.71 | 4.04 | 3.1 | 0.003 | 0.52 | 0.0 | 0.05 | 15.29 | 0.00 | 2.217 | 4.40 | 1.41 | 0.6 | 99.4 | 0.0 | 0.30 | 0.37 | 0.34 | 0.80 | 4.44 | 7224 | 980 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKY | 14057 | 2023-08-09 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.56 | 0.00 | 2.028 | 5.37 | 0.61 | 6.2 | 93.8 | 0.0 | -3.22 | 1.00 | 0.39 | 0.84 | 7.47 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✔ | 7oZH | 13124 | 2023-08-09 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 15.03 | 0.00 | 2.382 | 17.11 | 2.05 | 8.2 | 91.8 | 0.0 | -2.61 | 2.53 | 0.40 | 0.69 | 0.33 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |