Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HiZ	34830	2023-04-20	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7FBi	31515	2023-04-20	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	7UBB	26437	2023-04-20	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.60	0.0	0.04	14.50	0.00	2.283	8.83	0.00	1.8	98.2	0.0	-1.07	0.80	0.37	0.54	—	7448	896	8	0	0	0	0	logfile
✔	6X16	21990	2023-04-21	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.13	0.00	2.199	8.19	0.10	3.5	96.5	0.0	0.74	1.12	0.45	0.77	1.41	9438	1248	6	0	6	0	0	logfile
✔	7S1Y	24812	2023-04-20	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	8B70	15894	2023-04-21	2022-09-28	3.3	2.85	3.11	3.3	0.011	1.45	0.0	0.06	15.75	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.76	0.0	0.04	16.60	0.00	2.223	7.47	0.00	3.9	96.1	0.0	1.50	0.93	0.61	0.86	1.56	9258	1144	4	0	12	0	0	logfile
✔	7APK	11857	2023-04-27	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	7K8B	22725	2023-04-20	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.005	0.89	0.0	0.05	17.17	0.01	2.075	18.75	5.07	6.4	93.6	0.0	-0.82	1.19	0.42	0.65	0.86	5543	726	1	0	0	0	0	logfile
✔	7RTV	24690	2023-04-19	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	6U5H	20646	2023-04-20	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7WHN	32505	2023-04-21	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.00	0.00	2.281	5.47	0.10	2.7	97.3	0.0	0.94	0.40	0.37	0.82	2.21	9284	1170	1	0	0	0	0	logfile
✔	6oEU	7795	2023-04-20	2019-03-27	3.5	3.62	—	3.9	0.014	1.88	3.0	0.11	14.79	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.003	0.70	0.0	0.04	16.40	0.00	2.223	11.63	0.71	7.6	92.4	0.0	-0.20	1.53	0.47	0.69	0.83	7310	964	5	0	8	0	0	logfile
✔	6oGY	20059	2023-04-28	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.76	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.003	0.60	0.0	0.04	17.37	0.00	2.182	6.30	0.55	3.3	96.7	0.0	-2.25	1.16	0.38	0.85	2.09	74364	9081	13	6	1	0	0	logfile
✔	6oEG	20020	2023-04-24	2019-03-27	3.8	3.93	—	3.9	0.008	1.12	0.0	0.06	13.46	0.01	2.370	5.57	5.56	8.1	91.9	0.0	-4.92	0.42	0.79	3.01	3.9	0.004	0.82	0.0	0.05	15.80	0.00	2.022	10.49	0.55	8.2	91.8	0.0	-1.28	0.93	0.43	0.78	2.38	18564	2268	14	0	0	0	0	logfile
✔	6UZ3	20951	2023-04-21	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	8CK1	16689	2023-04-22	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.8	0.003	0.70	0.0	0.05	17.90	0.00	2.215	14.33	0.30	9.0	91.0	0.0	-1.64	0.55	0.42	0.81	1.82	12580	1616	6	0	0	0	0	logfile
✔	6DZY	8942	2023-04-20	2018-07-05	4.1	4.52	4.39	4.6	0.015	0.95	4.0	0.17	8.53	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.77	0.0	0.04	13.01	0.00	2.195	16.87	0.00	4.8	95.1	0.1	-0.54	1.88	0.44	0.68	—	7842	988	6	0	4	0	0	logfile
✔	6V6C	21068	2023-04-20	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile

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