Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V49	31704	2023-08-09	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	5L08	8300	2023-08-13	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.4	0.006	1.28	0.0	0.06	15.37	0.01	1.912	43.78	0.00	8.2	91.8	0.0	-2.70	3.88	0.27	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	7QWM	14189	2023-08-09	2022-01-25	2.76	2.21	2.47	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.006	0.76	0.0	0.05	18.44	0.00	2.247	10.77	0.79	7.8	92.2	0.0	-2.93	0.60	0.37	0.82	6.36	3255	405	3	0	0	0	0	logfile
✔	5L4K	4002	2023-08-19	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	8H9G	34566	2023-08-09	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.92	0.00	2.128	8.05	3.38	4.1	95.9	0.0	2.24	0.91	0.33	0.81	1.89	3381	421	3	0	0	0	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	7QKZ	14058	2023-08-09	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7QJW	14024	2023-08-10	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	6YBV	10774	2023-08-10	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.84	0.0	0.05	18.35	0.00	2.023	19.92	0.80	11.9	87.9	0.1	-2.54	3.35	0.34	0.59	0.71	6731	769	5	78	0	0	0	logfile
✔	7C1D	30269	2023-08-09	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	5LY6	4118	2023-08-09	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	7YKR	33895	2023-08-21	2022-07-23	3.2	3.70	3.34	4.7	0.008	1.02	8.0	0.06	10.92	0.01	2.215	4.01	0.83	9.3	90.7	0.0	-6.34	0.34	0.19	0.00	3.6	0.003	0.76	0.0	0.04	15.56	0.00	2.187	9.20	0.33	7.4	92.6	0.0	-0.67	2.70	0.63	0.77	1.90	31924	4140	4	0	0	0	0	logfile
✔	7ADJ	11727	2023-08-11	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.64	0.0	0.04	17.18	0.00	2.131	7.52	2.57	7.9	92.1	0.0	-1.24	1.53	0.40	0.77	2.99	9710	613	1	0	0	0	4790	logfile
✔	6W2D	21525	2023-08-18	2020-03-05	4.0	4.10	—	4.0	0.006	0.74	0.0	0.05	13.33	0.01	1.362	15.60	5.51	5.0	94.6	0.4	-2.57	0.34	0.54	—	4.0	0.005	0.86	0.0	0.05	16.99	0.01	2.025	17.88	0.82	6.9	93.1	0.1	-1.36	1.72	0.42	0.79	—	74272	9430	21	0	0	0	0	logfile
✔	7JQQ	22441	2023-08-20	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.003	0.78	0.0	0.04	22.83	0.00	1.952	22.64	0.00	9.6	90.4	0.0	-2.18	0.49	0.35	0.58	—	28416	1635	15	705	6	0	0	logfile
✔	7ELL	31184	2023-08-11	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.74	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.005	0.77	0.0	0.05	15.99	0.00	2.030	12.91	0.40	4.8	95.1	0.1	-0.02	1.31	0.34	0.88	1.94	60584	7917	31	0	10	0	0	logfile
✔	6oEE	20020	2023-08-19	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	6QD2	4517	2023-08-16	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	7QKJ	14044	2023-08-10	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.79	0.0	0.05	15.54	0.00	2.135	10.82	0.25	7.9	92.1	0.0	-2.54	1.07	0.36	0.85	3.02	6888	900	12	0	0	0	0	logfile

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