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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oEE | 20020 | 2022-12-15 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 17.76 | 0.00 | 2.240 | 11.08 | 0.51 | 12.9 | 87.1 | 0.0 | -1.11 | 0.99 | 0.35 | 0.75 | 0.70 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JQQ | 22441 | 2022-12-16 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 23.12 | 0.01 | 1.379 | 26.31 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 23.22 | 0.01 | 1.853 | 31.60 | 0.00 | 12.8 | 87.1 | 0.1 | -2.68 | 0.50 | 0.35 | 0.60 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2022-12-12 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.68 | 8.0 | 0.11 | 19.25 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 17.91 | 0.00 | 2.229 | 12.49 | 0.57 | 4.8 | 94.8 | 0.4 | 0.18 | 3.22 | 0.62 | 0.81 | 1.66 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 7ZQE | 14872 | 2022-12-11 | 2022-04-29 | 2.55 | 3.20 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.05 | 7.04 | 0.01 | 2.076 | 4.21 | 0.00 | 1.0 | 99.0 | 0.0 | -0.73 | 0.36 | 0.50 | 3.22 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 10.05 | 0.00 | 2.097 | 7.02 | 0.00 | 3.1 | 96.9 | 0.0 | 0.37 | 0.86 | 0.37 | 0.55 | -0.06 | 1423 | 98 | 1 | 0 | 1 | 0 | 694 | logfile |
✘ | 7ZH7 | 14726 | 2022-12-18 | 2022-04-05 | 3.3 | 3.52 | 2.56 | 3.5 | 0.003 | 0.74 | 0.0 | 0.05 | 11.41 | 0.01 | 2.267 | 3.63 | 0.00 | 2.7 | 97.3 | 0.0 | -4.42 | 0.36 | 0.78 | 5.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11520 | 760 | 10 | 0 | 0 | 0 | 5390 | logfile |
✔ | 5A6E | 3062 | 2022-12-12 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.58 | 0.0 | 0.03 | 10.50 | 0.00 | 1.994 | 10.27 | 0.00 | 6.4 | 93.6 | 0.0 | -0.83 | 1.50 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U1D | 8482 | 2022-12-11 | 2016-11-28 | 3.97 | 4.06 | — | 4.3 | 0.007 | 1.17 | 0.0 | 0.05 | 12.05 | 0.00 | 2.452 | 0.07 | 0.84 | 5.7 | 94.1 | 0.2 | -2.16 | 0.36 | 0.48 | 1.30 | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 15.81 | 0.00 | 2.146 | 15.97 | 1.52 | 4.5 | 95.4 | 0.1 | 0.92 | 1.07 | 0.52 | 0.75 | 1.06 | 7815 | 1168 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2022-12-19 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.92 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PMV | 13541 | 2022-12-13 | 2021-09-02 | 3.7 | 3.39 | — | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.01 | 1.939 | 9.10 | 0.03 | 14.7 | 85.0 | 0.3 | -2.65 | 0.36 | 0.58 | 1.90 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 15.48 | 0.00 | 1.937 | 9.14 | 0.18 | 15.6 | 84.1 | 0.3 | -2.73 | 0.58 | 0.52 | 0.70 | 1.77 | 68016 | 4560 | 13 | 0 | 39 | 4 | 32673 | logfile |
✔ | 7N5F | 24188 | 2022-12-11 | 2021-06-05 | 2.7 | 2.27 | 2.74 | 2.0 | 0.023 | 1.50 | 0.0 | 0.10 | 9.99 | 0.01 | 2.468 | 0.16 | 0.00 | 1.3 | 98.7 | 0.0 | 1.68 | 0.36 | 0.75 | 3.32 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 17.43 | 0.00 | 2.324 | 7.74 | 0.95 | 1.3 | 98.7 | 0.0 | 2.60 | 0.79 | 0.36 | 0.78 | 3.26 | 3037 | 386 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2022-12-11 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.80 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 13.23 | 0.00 | 2.284 | 10.02 | 0.35 | 11.1 | 88.9 | 0.0 | -3.87 | 1.40 | 0.36 | 0.78 | 3.90 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-12-12 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.76 | 0.0 | 0.04 | 11.92 | 0.00 | 2.175 | 17.10 | 0.00 | 5.1 | 94.8 | 0.1 | -0.25 | 2.04 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2022-12-12 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.86 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.83 | 0.0 | 0.04 | 14.25 | 0.00 | 2.119 | 19.77 | 0.00 | 7.3 | 92.0 | 0.7 | -1.08 | 2.02 | 0.51 | 0.50 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QK6 | 14039 | 2022-12-11 | 2021-12-17 | 2.27 | 2.34 | 2.17 | 2.3 | 0.011 | 1.84 | 0.0 | 0.09 | 9.70 | 0.01 | 2.520 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.99 | 0.37 | 0.79 | 7.78 | 2.3 | 0.002 | 0.57 | 0.0 | 0.05 | 15.85 | 0.00 | 2.385 | 4.06 | 0.69 | 5.8 | 94.2 | 0.0 | -2.20 | 1.44 | 0.38 | 0.85 | 7.07 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 7QKK | 14045 | 2022-12-11 | 2021-12-17 | 2.8 | 2.31 | 2.82 | 3.2 | 0.012 | 2.17 | 4.0 | 0.12 | 13.17 | 0.02 | 2.483 | 1.98 | 0.00 | 9.5 | 90.5 | 0.0 | -3.44 | 0.37 | 0.77 | 4.39 | 3.2 | 0.003 | 0.69 | 0.0 | 0.05 | 17.34 | 0.00 | 2.154 | 11.04 | 1.52 | 6.3 | 93.7 | 0.0 | -3.55 | 2.17 | 0.34 | 0.78 | 3.12 | 3537 | 228 | 3 | 0 | 0 | 0 | 1803 | logfile |
✔ | 4V1A | 2787 | 2022-12-16 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.20 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.83 | 0.00 | 2.076 | 10.41 | 0.15 | 4.3 | 95.6 | 0.1 | 0.54 | 1.91 | 0.38 | 0.78 | 1.67 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 7CG0 | 30348 | 2022-12-12 | 2020-06-30 | 3.2 | 3.51 | — | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 11.23 | 0.00 | 1.992 | 8.37 | 2.56 | 3.0 | 97.0 | 0.0 | 3.52 | 0.37 | 0.79 | 1.26 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.87 | 0.00 | 2.077 | 10.72 | 0.79 | 3.0 | 97.0 | 0.0 | 2.99 | 0.86 | 0.39 | 0.83 | 1.16 | 10928 | 1412 | 21 | 0 | 75 | 0 | 0 | logfile |
✔ | 7QK2 | 14029 | 2022-12-11 | 2021-12-17 | 2.61 | 2.61 | 2.37 | 2.7 | 0.011 | 1.86 | 10.0 | 0.11 | 10.81 | 0.01 | 2.499 | 0.76 | 0.00 | 4.1 | 95.9 | 0.0 | -1.51 | 0.37 | 0.86 | 6.04 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 17.08 | 0.00 | 2.113 | 4.99 | 2.96 | 2.7 | 97.3 | 0.0 | -1.83 | 1.72 | 0.37 | 0.87 | 5.30 | 3246 | 426 | 6 | 0 | 0 | 0 | 0 | logfile |