The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V49 | 31704 | 2023-08-09 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.73 | 0.0 | 0.05 | 14.81 | 0.00 | 2.500 | 7.22 | 0.00 | 13.2 | 86.8 | 0.0 | -5.75 | 1.27 | 0.31 | 0.69 | 4.86 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-08-13 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.4 | 0.006 | 1.28 | 0.0 | 0.06 | 15.37 | 0.01 | 1.912 | 43.78 | 0.00 | 8.2 | 91.8 | 0.0 | -2.70 | 3.88 | 0.27 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QWM | 14189 | 2023-08-09 | 2022-01-25 | 2.76 | 2.21 | 2.47 | 2.2 | 0.012 | 1.93 | 3.0 | 0.11 | 13.26 | 0.01 | 2.502 | 0.15 | 0.00 | 8.0 | 92.0 | 0.0 | -2.89 | 0.34 | 0.80 | 6.86 | 2.2 | 0.006 | 0.76 | 0.0 | 0.05 | 18.44 | 0.00 | 2.247 | 10.77 | 0.79 | 7.8 | 92.2 | 0.0 | -2.93 | 0.60 | 0.37 | 0.82 | 6.36 | 3255 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2023-08-19 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 8H9G | 34566 | 2023-08-09 | 2022-10-25 | 2.95 | 3.31 | 3.17 | 3.3 | 0.008 | 0.77 | 0.0 | 0.05 | 14.93 | 0.01 | 2.278 | 10.74 | 0.00 | 5.8 | 94.2 | 0.0 | -2.39 | 0.34 | 0.81 | 2.01 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 17.92 | 0.00 | 2.128 | 8.05 | 3.38 | 4.1 | 95.9 | 0.0 | 2.24 | 0.91 | 0.33 | 0.81 | 1.89 | 3381 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-08-31 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 7QKZ | 14058 | 2023-08-09 | 2021-12-19 | 2.65 | 2.79 | 2.28 | 3.2 | 0.013 | 2.86 | 9.0 | 0.34 | 18.75 | 0.02 | 2.498 | 0.59 | 0.00 | 9.9 | 90.1 | 0.0 | -1.61 | 0.34 | 0.61 | 7.02 | 2.7 | 0.006 | 1.50 | 0.0 | 0.38 | 19.60 | 0.01 | 2.257 | 11.23 | 0.00 | 1.2 | 98.8 | 0.0 | -0.53 | 5.08 | 0.34 | 0.64 | 6.63 | 1701 | 99 | 9 | 0 | 0 | 0 | 891 | logfile |
✔ | 7T2E | 25611 | 2023-08-09 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QJW | 14024 | 2023-08-10 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.00 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.003 | 0.63 | 0.0 | 0.05 | 15.65 | 0.00 | 2.366 | 4.13 | 1.01 | 2.7 | 97.3 | 0.0 | -1.58 | 1.60 | 0.38 | 0.78 | 4.37 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 6YBV | 10774 | 2023-08-10 | 2020-03-17 | 3.8 | 3.86 | 4.60 | 3.6 | 0.008 | 1.47 | 0.0 | 0.07 | 17.69 | 0.01 | 2.202 | 9.58 | 6.67 | 6.1 | 93.4 | 0.5 | -2.26 | 0.34 | 0.56 | 1.26 | 3.6 | 0.004 | 0.84 | 0.0 | 0.05 | 18.35 | 0.00 | 2.023 | 19.92 | 0.80 | 11.9 | 87.9 | 0.1 | -2.54 | 3.35 | 0.34 | 0.59 | 0.71 | 6731 | 769 | 5 | 78 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2023-08-09 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-08-09 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YKR | 33895 | 2023-08-21 | 2022-07-23 | 3.2 | 3.70 | 3.34 | 4.7 | 0.008 | 1.02 | 8.0 | 0.06 | 10.92 | 0.01 | 2.215 | 4.01 | 0.83 | 9.3 | 90.7 | 0.0 | -6.34 | 0.34 | 0.19 | 0.00 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 15.56 | 0.00 | 2.187 | 9.20 | 0.33 | 7.4 | 92.6 | 0.0 | -0.67 | 2.70 | 0.63 | 0.77 | 1.90 | 31924 | 4140 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADJ | 11727 | 2023-08-11 | 2020-09-15 | 2.8 | 3.02 | 2.79 | 3.0 | 0.014 | 1.99 | 4.0 | 0.11 | 14.68 | 0.01 | 2.562 | 0.51 | 0.18 | 6.9 | 93.1 | 0.0 | -2.18 | 0.34 | 0.70 | 3.50 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.18 | 0.00 | 2.131 | 7.52 | 2.57 | 7.9 | 92.1 | 0.0 | -1.24 | 1.53 | 0.40 | 0.77 | 2.99 | 9710 | 613 | 1 | 0 | 0 | 0 | 4790 | logfile |
✔ | 6W2D | 21525 | 2023-08-18 | 2020-03-05 | 4.0 | 4.10 | — | 4.0 | 0.006 | 0.74 | 0.0 | 0.05 | 13.33 | 0.01 | 1.362 | 15.60 | 5.51 | 5.0 | 94.6 | 0.4 | -2.57 | 0.34 | 0.54 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 16.99 | 0.01 | 2.025 | 17.88 | 0.82 | 6.9 | 93.1 | 0.1 | -1.36 | 1.72 | 0.42 | 0.79 | — | 74272 | 9430 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JQQ | 22441 | 2023-08-20 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 23.12 | 0.01 | 1.379 | 26.31 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 22.83 | 0.00 | 1.952 | 22.64 | 0.00 | 9.6 | 90.4 | 0.0 | -2.18 | 0.49 | 0.35 | 0.58 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 7ELL | 31184 | 2023-08-11 | 2021-04-12 | 3.8 | 4.24 | — | 3.8 | 0.006 | 0.86 | 1.0 | 0.05 | 14.83 | 0.01 | 1.176 | 17.74 | 0.62 | 8.9 | 90.9 | 0.2 | -2.13 | 0.35 | 0.86 | 1.77 | 3.8 | 0.005 | 0.77 | 0.0 | 0.05 | 15.99 | 0.00 | 2.030 | 12.91 | 0.40 | 4.8 | 95.1 | 0.1 | -0.02 | 1.31 | 0.34 | 0.88 | 1.94 | 60584 | 7917 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-08-19 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2023-08-16 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.68 | 0.0 | 0.04 | 10.92 | 0.00 | 2.087 | 11.59 | 0.00 | 9.1 | 90.9 | 0.0 | -1.48 | 1.09 | 0.39 | 0.65 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 7QKJ | 14044 | 2023-08-10 | 2021-12-17 | 3.26 | 3.08 | 3.11 | 3.2 | 0.012 | 2.04 | 12.0 | 0.16 | 11.59 | 0.01 | 2.510 | 0.21 | 0.00 | 9.9 | 90.1 | 0.0 | -2.24 | 0.35 | 0.71 | 3.92 | 3.2 | 0.005 | 0.79 | 0.0 | 0.05 | 15.54 | 0.00 | 2.135 | 10.82 | 0.25 | 7.9 | 92.1 | 0.0 | -2.54 | 1.07 | 0.36 | 0.85 | 3.02 | 6888 | 900 | 12 | 0 | 0 | 0 | 0 | logfile |