Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGF	22325	2023-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6S6L	10103	2023-07-06	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.002	0.59	0.0	0.04	12.12	0.01	2.158	8.90	0.24	3.5	96.5	0.0	-0.82	0.55	0.40	0.66	2.99	11587	1510	3	0	0	0	0	logfile
✔	6DU8	8912	2023-07-06	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile
✔	6QPi	4614	2023-07-03	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	5oPT	3844	2023-07-14	2017-08-10	4.0	4.15	—	4.1	0.017	2.04	31.0	0.13	16.39	0.02	2.216	0.79	0.41	8.5	89.6	1.9	-4.21	0.40	0.58	—	4.1	0.004	0.77	0.0	0.04	18.17	0.01	2.023	19.21	0.88	9.1	90.6	0.3	-2.43	1.90	0.46	0.74	—	82219	4903	35	2022	0	0	0	logfile
✔	6X16	21990	2023-07-05	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.13	0.00	2.199	8.19	0.10	3.5	96.5	0.0	0.74	1.12	0.45	0.77	1.41	9438	1248	6	0	6	0	0	logfile
✘	6QoZ	4610	2023-07-09	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17987	2307	9	0	0	0	0	logfile
✔	7KF5	22843	2023-07-19	2020-10-13	3.2	3.46	—	3.6	0.003	0.55	0.0	0.04	15.93	0.02	2.007	9.13	0.24	4.2	95.8	0.0	-2.33	0.40	0.71	0.91	3.5	0.004	0.64	0.0	0.04	17.66	0.00	2.030	9.30	0.47	4.8	95.2	0.0	-0.05	1.41	0.39	0.76	1.73	48069	3075	3	0	0	0	24414	logfile
✔	7S1Y	24812	2023-07-04	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	7UBB	26437	2023-07-04	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.60	0.0	0.04	14.50	0.00	2.283	8.83	0.00	1.8	98.2	0.0	-1.07	0.80	0.37	0.54	—	7448	896	8	0	0	0	0	logfile
✔	6ZMS	11300	2023-07-06	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.64	0.0	0.04	15.70	0.00	2.031	5.57	0.14	6.2	93.4	0.4	-1.93	1.76	0.35	0.84	3.57	12570	818	4	0	0	0	6173	logfile
✔	5V6P	8637	2023-07-05	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.63	0.0	0.03	12.99	0.00	2.171	12.95	0.00	3.0	97.0	0.0	2.68	1.65	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	7FBi	31515	2023-07-04	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	7K8A	22724	2023-07-06	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7N5G	24189	2023-07-03	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	6X0V	21985	2023-07-03	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✘	7RL5	24516	2023-07-11	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	6MLU	9146	2023-07-03	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	7RL0	24512	2023-07-11	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	14.56	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.009	0.80	0.0	0.05	17.05	0.01	1.762	12.73	2.68	3.8	96.0	0.2	0.07	1.16	0.52	0.69	2.15	106080	6708	24	0	48	0	52716	logfile
✔	8B70	15894	2023-07-05	2022-09-28	3.3	2.85	3.11	3.3	0.011	1.45	0.0	0.06	15.75	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.76	0.0	0.04	16.60	0.00	2.223	7.47	0.00	3.9	96.1	0.0	1.50	0.93	0.61	0.86	1.56	9258	1144	4	0	12	0	0	logfile

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