Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V48	31703	2023-02-16	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.003	0.65	0.0	0.05	14.23	0.00	2.197	4.51	4.17	15.6	84.4	0.0	-5.01	0.50	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	7CG0	30348	2023-02-19	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	7YWA	34151	2023-02-17	2022-08-22	3.26	2.85	3.14	3.1	0.006	0.87	0.0	0.05	18.79	0.00	1.718	11.41	0.85	3.0	97.0	0.0	0.53	0.37	0.69	2.31	3.0	0.005	0.63	0.0	0.05	18.78	0.00	1.917	13.56	0.17	3.5	96.5	0.0	0.37	0.61	0.45	0.75	2.53	5808	744	6	6	4	0	0	logfile
✔	7S4M	24831	2023-02-24	2021-09-09	2.42	3.75	—	3.8	0.007	0.93	2.0	0.05	18.77	0.01	2.015	13.81	6.06	5.5	94.0	0.4	-0.17	0.37	0.60	2.25	3.8	0.004	0.67	0.0	0.04	17.77	0.01	2.025	11.79	3.63	6.2	93.8	0.0	-0.35	0.63	0.44	0.73	2.24	21729	2619	31	0	84	36	0	logfile
✘	6JP8	9867	2023-02-24	2019-03-26	2.7	2.51	—	2.6	0.013	1.46	8.0	0.12	14.43	0.01	1.877	25.96	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✔	6L31	0816	2023-02-23	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.003	0.83	0.0	0.05	14.03	0.01	1.986	21.22	0.00	9.7	90.3	0.0	-3.01	2.41	0.38	0.71	—	20905	2670	6	0	0	0	0	logfile
✔	7YMN	33934	2023-02-17	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.004	0.67	0.0	0.05	14.02	0.01	2.199	9.48	0.25	7.9	92.1	0.0	-4.57	0.47	0.48	0.82	4.24	3468	456	6	0	0	0	0	logfile
✔	7X83	33054	2023-02-17	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.6	0.004	0.70	0.0	0.05	15.14	0.00	2.247	12.75	0.79	13.3	86.7	0.0	-4.84	0.60	0.39	0.84	4.52	3258	405	3	0	0	0	0	logfile
✔	7DNL	30787	2023-02-24	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.003	0.74	0.0	0.05	13.54	0.01	2.085	15.86	0.04	7.0	93.0	0.0	-2.38	0.75	0.38	0.78	—	21847	2769	7	0	0	0	0	logfile
✔	6N9Y	0383	2023-02-17	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.68	0.0	0.04	15.57	0.00	2.156	13.06	0.00	7.8	92.2	0.0	-0.84	1.77	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	8BC1	15959	2023-02-18	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	7QK3	14030	2023-02-16	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	8BG9	16027	2023-02-16	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	7QKG	14041	2023-02-16	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.59	0.0	0.05	13.27	0.00	2.236	5.27	0.00	4.5	95.5	0.0	-1.51	1.16	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	6LYY	30019	2023-02-17	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.73	0.0	0.04	15.57	0.00	2.234	10.71	1.20	4.9	95.1	0.0	0.23	1.65	0.46	0.67	1.62	4104	597	3	0	1	0	0	logfile
✔	6PES	20331	2023-02-17	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.004	0.61	0.0	0.05	14.62	0.00	2.275	9.16	0.24	7.5	92.5	0.0	-2.54	0.55	0.43	0.82	2.73	4040	590	10	0	0	0	0	logfile
✔	7TQU	26072	2023-02-23	2022-01-27	3.8	3.89	3.57	3.8	0.021	1.81	0.0	0.10	9.74	0.01	2.375	0.92	0.00	2.1	97.9	0.0	0.71	0.38	0.84	3.42	3.8	0.005	0.70	0.0	0.05	15.22	0.00	2.091	12.13	0.72	3.9	96.1	0.0	-0.65	0.82	0.36	0.84	2.74	20891	2544	17	0	217	0	0	logfile
✔	6HRF	0260	2023-02-17	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.52	0.00	2.196	8.66	0.50	6.9	93.1	0.0	-3.41	3.56	0.37	0.78	3.67	3522	462	6	0	0	0	0	logfile
✔	6CU7	7618	2023-02-17	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.003	0.60	0.0	0.05	13.65	0.00	2.209	12.68	0.48	13.1	86.9	0.0	-4.33	1.75	0.36	0.70	2.29	4140	600	10	0	0	0	0	logfile
✔	7QJY	14026	2023-02-17	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.007	0.81	0.0	0.05	17.02	0.00	2.151	8.68	0.76	2.3	97.7	0.0	-2.24	3.43	0.35	0.83	4.41	3444	450	6	0	0	0	0	logfile

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