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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o9G | 3765 | 2022-05-14 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.47 | 0.00 | 2.194 | 7.47 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.003 | 0.71 | 0.0 | 0.04 | 23.98 | 0.00 | 1.014 | 17.73 | 0.00 | 5.5 | 94.4 | 0.1 | -1.08 | 2.79 | 0.83 | 0.69 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2022-05-12 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.39 | 0.01 | 2.260 | 21.55 | 0.00 | 7.9 | 92.1 | 0.0 | -1.85 | 2.19 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WVE | 6690 | 2022-05-15 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.34 | 0.01 | 1.493 | 69.21 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | 4.5 | 0.003 | 0.83 | 0.0 | 0.04 | 13.53 | 0.00 | 1.821 | 24.92 | 0.01 | 7.8 | 91.5 | 0.7 | -2.05 | 1.65 | 0.80 | 0.60 | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✔ | 6CAJ | 7442 | 2022-05-15 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.96 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.011 | 1.12 | 2.0 | 0.04 | 15.91 | 0.00 | 1.756 | 14.31 | 2.92 | 4.3 | 95.7 | 0.0 | -0.61 | 0.75 | 0.75 | 0.82 | 2.85 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 5NV3 | 3699 | 2022-05-17 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.21 | 2.0 | 0.07 | 14.58 | 0.00 | 2.164 | 3.27 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | 3.4 | 0.020 | 1.19 | 0.0 | 0.04 | 16.57 | 0.00 | 1.942 | 8.72 | 0.15 | 3.4 | 96.6 | 0.0 | -0.40 | 1.63 | 0.59 | 0.75 | 3.92 | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-05-17 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.004 | 0.83 | 0.0 | 0.04 | 15.55 | 0.01 | 2.085 | 26.64 | 0.22 | 6.6 | 93.4 | 0.0 | -0.75 | 2.06 | 0.50 | 0.56 | 0.33 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CRZ | 7577 | 2022-05-15 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 0.96 | 0.0 | 0.06 | 9.21 | 0.01 | 2.254 | 6.85 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.4 | 0.007 | 0.94 | 0.0 | 0.05 | 13.56 | 0.01 | 2.084 | 15.47 | 0.61 | 7.1 | 92.9 | 0.1 | -2.19 | 1.45 | 0.59 | 0.55 | 0.91 | 25909 | 3205 | 6 | 0 | 66 | 0 | 0 | logfile |
✔ | 1oED | 1044 | 2022-05-12 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 225.04 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.004 | 1.03 | 0.0 | 0.05 | 15.86 | 0.01 | 2.151 | 21.91 | 0.52 | 2.1 | 97.9 | 0.0 | 1.73 | 2.85 | 0.63 | 0.45 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2022-05-14 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.16 | 12.0 | 0.12 | 10.63 | 0.02 | 1.395 | 35.89 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 15 | 0 | 192 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2022-05-16 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.011 | 1.01 | 1.0 | 0.04 | 14.16 | 0.01 | 1.847 | 23.47 | 0.00 | 6.4 | 93.6 | 0.0 | -1.30 | 1.60 | 0.62 | 0.41 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6PB5 | 20287 | 2022-05-14 | 2019-06-13 | 4.52 | 5.95 | — | 8.8 | 0.011 | 1.31 | 0.0 | 0.06 | 16.15 | 0.01 | 1.966 | 13.22 | 0.26 | 11.6 | 87.7 | 0.7 | -4.55 | 0.58 | 0.19 | — | 4.0 | 0.006 | 0.88 | 0.0 | 0.04 | 16.87 | 0.01 | 1.751 | 32.80 | 0.00 | 13.9 | 85.9 | 0.2 | -3.16 | 2.25 | 0.78 | 0.63 | — | 69696 | 4084 | 13 | 156 | 5 | 0 | 34319 | logfile |
✔ | 7APK | 11857 | 2022-05-15 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.14 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.007 | 0.84 | 1.0 | 0.04 | 12.90 | 0.00 | 1.695 | 14.03 | 0.09 | 5.7 | 94.1 | 0.1 | 1.02 | 1.04 | 0.49 | 0.42 | 0.88 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2022-05-13 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.86 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.83 | 0.0 | 0.04 | 14.24 | 0.00 | 2.089 | 18.26 | 0.00 | 6.9 | 92.5 | 0.6 | -1.00 | 1.74 | 0.51 | 0.50 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6iH9 | 9671 | 2022-05-03 | 2018-09-29 | 2.8 | 2.91 | — | 3.5 | 0.008 | 0.93 | 0.0 | 0.05 | 10.02 | 0.01 | 1.244 | 43.79 | 0.65 | 4.2 | 95.6 | 0.2 | -2.32 | 0.34 | 0.23 | 0.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 248580 | 31020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2022-05-13 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.05 | 8.38 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.011 | 1.13 | 2.0 | 0.05 | 14.90 | 0.01 | 2.030 | 15.53 | 0.78 | 7.4 | 92.6 | 0.0 | -1.91 | 1.86 | 0.66 | 0.62 | 0.66 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2022-05-15 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.010 | 0.89 | 0.0 | 0.03 | 19.65 | 0.01 | 1.899 | 9.15 | 4.21 | 5.0 | 94.9 | 0.2 | 2.05 | 1.40 | 0.22 | 0.78 | 1.86 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2022-05-15 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 18.86 | 0.01 | 1.953 | 13.57 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.4 | 0.004 | 0.71 | 0.0 | 0.04 | 18.43 | 0.01 | 2.007 | 20.68 | 3.83 | 9.0 | 90.9 | 0.0 | -2.12 | 2.00 | 0.87 | 0.80 | 0.84 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2022-05-17 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.38 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.4 | 0.007 | 1.28 | 0.0 | 0.17 | 17.71 | 0.01 | 2.066 | 17.56 | 2.77 | 6.8 | 93.2 | 0.0 | -1.95 | 1.85 | 0.76 | 0.69 | 0.77 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2022-05-12 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.004 | 1.19 | 0.0 | 0.04 | 13.17 | 0.00 | 1.948 | 19.40 | 0.00 | 27.4 | 72.5 | 0.2 | -5.14 | 6.11 | 0.74 | 0.62 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2022-05-12 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.9 | 0.004 | 1.07 | 0.0 | 0.05 | 8.41 | 0.00 | 2.068 | 18.09 | 0.00 | 18.4 | 81.5 | 0.1 | -5.13 | 3.15 | 0.75 | 0.57 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |