Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWE	34310	2023-02-24	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.87	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	6C9Y	7438	2023-02-26	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.62	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.86	0.0	0.05	13.78	0.01	2.008	22.62	0.00	7.9	92.0	0.1	-1.85	3.63	0.63	0.42	—	28920	3685	7	0	3	0	0	logfile
✘	5M5H	4155	2023-02-16	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✔	6CAJ	7442	2023-02-25	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.69	0.0	0.04	16.38	0.00	2.142	11.46	2.76	5.1	94.9	0.0	-0.19	1.21	0.75	0.85	2.84	24295	3210	11	0	1	0	0	logfile
✔	8GWG	34312	2023-02-24	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.42	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	6CRZ	7577	2023-02-25	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	1.08	0.0	0.06	13.63	0.01	2.021	20.82	0.54	9.3	90.5	0.1	-2.67	1.61	0.61	0.58	0.77	25909	3205	25	0	66	0	0	logfile
✔	1oED	1044	2023-02-17	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	15.88	0.01	2.224	22.69	0.69	2.3	97.7	0.0	1.70	2.92	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	6MN7	9166	2023-02-23	2018-10-01	4.8	5.01	—	5.0	0.016	2.16	12.0	0.12	10.63	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✔	6PB5	20287	2023-02-27	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.18	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.004	0.80	0.0	0.04	16.87	0.01	1.752	28.81	0.00	11.3	88.5	0.2	-3.26	2.26	0.78	0.63	—	69696	4084	13	156	5	0	34319	logfile
✔	7NK1	12428	2023-02-26	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.68	0.0	0.04	14.15	0.00	1.835	21.70	0.00	6.8	93.2	0.0	-1.16	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	6Q2o	20576	2023-02-21	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.004	0.78	0.0	0.04	14.70	0.00	2.133	14.79	0.54	7.0	93.0	0.0	-1.65	2.04	0.68	0.64	0.83	15196	1900	8	0	20	0	0	logfile
✔	7LJ3	23388	2023-02-25	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	7oTi	13060	2023-02-19	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	7BZX	30262	2023-02-17	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	6HRA	14916	2023-02-19	2018-09-26	3.7	3.78	3.62	3.7	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.43	0.25	0.33	3.7	0.003	0.76	0.0	0.04	14.44	0.00	2.141	14.69	0.18	4.4	95.6	0.0	-1.28	1.49	0.59	0.62	0.73	10818	1450	5	0	3	0	0	logfile
✔	7DZW	30915	2023-02-21	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7oLE	12979	2023-02-26	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.003	0.80	0.0	0.04	15.95	0.01	2.131	19.19	0.29	10.0	89.8	0.2	-1.90	1.96	0.77	0.76	0.84	26995	2899	14	0	1129	0	0	logfile
✔	7DZY	30921	2023-02-22	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.91	0.0	0.00	5.70	0.00	2.051	3.31	0.00	15.9	83.9	0.1	-2.90	2.20	0.70	0.69	—	18708	4677	9	0	0	0	0	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile

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