Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ENJ	31211	2021-12-01	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.80	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.66	0.0	0.04	14.03	0.00	2.129	12.35	0.00	5.2	94.7	0.1	1.31	0.75	0.83	0.70	—	57971	7340	27	0	21	0	0	logfile
✘	7FiJ	31599	2021-12-01	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	6PZA	20530	2021-12-01	2019-07-31	3.74	3.92	—	3.9	0.007	1.05	0.0	0.06	10.78	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.011	1.09	1.0	0.04	15.29	0.01	2.186	9.72	1.30	5.9	94.1	0.0	0.20	1.26	0.63	0.80	0.86	9659	1441	3	0	2	0	0	logfile
✔	6oG2	20050	2021-12-01	2019-04-01	4.1	4.11	—	4.0	0.006	1.11	0.0	0.06	17.54	0.01	2.211	12.25	0.43	12.3	87.5	0.2	-5.21	0.50	0.50	—	4.0	0.004	0.85	0.0	0.05	15.08	0.00	2.121	20.00	0.00	10.3	89.7	0.0	-2.91	1.99	0.57	0.65	—	8847	1106	4	0	3	0	0	logfile
✔	6V6S	21073	2021-12-01	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.46	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.007	0.76	1.0	0.04	13.85	0.00	1.263	13.37	0.05	3.7	96.3	0.0	-0.16	1.00	0.57	0.54	—	106422	13155	53	14	721	0	0	logfile
✔	6PMi	20394	2021-12-01	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57985	3453	10	110	4	0	28610	logfile
✔	6LYY	30019	2021-12-01	2020-02-16	3.2	3.40	—	3.9	0.013	1.39	9.0	0.10	13.52	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.004	0.76	0.0	0.04	15.92	0.01	2.235	9.81	1.20	4.7	95.3	0.0	0.24	1.24	0.46	0.66	1.88	4104	597	3	0	1	0	0	logfile
✘	7PiJ	13438	2021-12-01	2021-08-20	3.47	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.49	0.51	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	7JLX	22383	2021-12-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7D4G	30573	2021-12-01	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.006	0.93	0.0	0.05	15.55	0.01	2.165	21.29	1.39	11.9	87.9	0.2	-2.60	2.81	0.67	0.72	1.75	3925	502	3	0	0	0	0	logfile
✔	7NZM	12665	2021-12-01	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.52	-0.04	4.3	0.003	0.72	0.0	0.04	14.93	0.00	2.028	16.52	0.21	2.4	97.6	0.0	0.49	1.48	0.94	0.84	0.23	9109	1157	8	0	4	0	0	logfile
✔	6ZPi	11340	2021-12-01	2020-07-08	4.5	4.63	—	4.4	0.007	1.14	3.0	0.06	15.34	0.01	1.667	13.95	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.003	0.71	0.0	0.04	14.45	0.01	1.945	16.05	0.00	5.1	94.9	0.1	0.13	1.11	0.84	0.79	—	9412	1184	6	1	5	0	0	logfile
✔	6QYZ	4680	2021-12-01	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.15	0.0	0.07	28.39	0.01	2.043	76.21	0.00	0.0	0.0	0.0	—	4.53	0.72	0.62	—	7300	0	5	345	0	0	0	logfile
✔	6DZW	8941	2021-12-01	2018-07-05	4.3	4.31	5.22	4.9	0.003	0.84	0.0	0.09	13.51	0.01	2.052	3.80	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	4.9	0.003	0.78	0.0	0.04	13.38	0.00	2.196	16.37	0.12	4.3	95.7	0.0	-1.37	1.82	0.48	0.60	—	7829	988	5	0	4	0	0	logfile
✔	6FVW	4322	2021-12-01	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.51	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110594	14032	59	0	12	20	0	logfile
✔	6MET	9109	2021-12-02	2018-09-07	4.5	4.68	4.22	4.4	0.006	0.99	0.0	0.15	10.66	0.01	1.985	11.97	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.004	0.85	0.0	0.07	11.72	0.00	2.102	15.90	0.00	7.7	92.2	0.1	-1.85	1.21	0.69	0.81	—	8911	1074	5	0	32	0	0	logfile
✔	6Xi8	22191	2021-12-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	1.19	0.0	0.05	17.71	0.01	2.174	18.85	0.77	8.5	91.5	0.0	-2.29	1.24	0.68	0.64	0.95	5022	636	4	0	2	0	0	logfile
✘	7CXR	30495	2021-12-01	2020-09-02	3.4	3.32	3.43	3.7	0.007	0.87	1.0	0.06	16.56	0.00	2.199	12.79	3.39	6.6	93.1	0.3	-2.27	0.52	0.54	1.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5168	614	2	0	0	0	0	logfile
✔	7ARK	11885	2021-12-01	2020-10-25	4.1	4.15	—	4.1	0.003	0.77	0.0	0.05	13.71	0.00	2.191	3.82	0.10	5.5	94.5	0.0	-5.58	0.59	0.54	—	4.1	0.003	0.72	0.0	0.04	13.54	0.00	1.991	12.07	0.00	5.2	94.8	0.0	-2.74	1.34	0.63	0.63	—	9570	1243	6	0	4	0	0	logfile
✔	5JUL	8177	2021-12-01	2016-05-10	4.4	4.41	—	4.3	0.012	1.51	16.0	0.06	10.59	0.01	1.568	34.11	0.18	16.6	80.8	2.5	-4.96	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	161200	19728	32	0	16	0	0	logfile

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